Carg12410-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12410-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox prospero
Location	Cucurbita_argyrosperma_scaffold_074 : 805063 .. 807102 (+)
Sequence length	1471

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTTTTTCCTCTCTAGAGTTCATATACCCAATTCCCATCCCGTGCGAAGAGAAGGCAATCGAAAAGACGCCGTGCAGTGTCTGCCGCGCTCGTCCTGCTCTCCGTTGTTGCGATTTAATTGCAAACCTGTTCCTTCGCCACTGCAACAAAGATACTGGAGGACGGGAATCGGATTCTTTAATCTCGATCGAGATCAACATTTTGGATTTCTCTTTGTTGTTTTTGGACTGTAAGCTATCCATCGCGCCGATTTTCAATTTTTCGTTTTGCTTCTTCTTCTATTGTTTCCGGATAAAATGGTGATATTTTTCTGAAATTGTTCAGTAGCTCTGTGATATTACTTAGAGTGTTAAGATTGCTACGAAATGAGACATCGCTGCGACGTTCTAGTTCTCTTATTTTAAACACTGTCAAGAGAAATCAATCTGCGAAGTTTGCGTTAAGAAATCTCCATGATTCGTAAACGCTTTCAAGAAGCTAAAACAGGTAAGTTACGAATAGTTTGTGCCTCATTTCTTCCATTTTTGGCTTTGATTTATGAGCTTGCCTCCTTACTGTTTGATAAATTGCTTGAAAGCAATATATATGTATATTGTTTATATATAGTTTTCTTGTACTGGAATCTCAGGCCTGCAACTGGTGAAATCGATGAGAGCCGAAAGGTTCTTGAAGAAAGTTGGATTGGGCAGAGAGGATCGTTACTTCTGGAAGCAAATTGGAAAGGCTCTGTTATTTTCGTATACTCTGATCGGCGTTGCATGGCTTTACAACGAAACATCACCATTTGGCTGGTGGACGCTGAAGCCACGGTCCAAGGCAGAGAAAGATTTGGCTCACCTCTATGAGCGTAGGGAGTTTCCATATCCAGGTTGTTAAATCTCCGCATAATACCCAAAAAATTTAAGTTGATTGAAAATGAAATTGAGCTGCTGTATAAATTTCACTGCTAGATGGAAAAAAAAATAGGGAAAAATTATAAAATCCACTTAGAACAATAAGGGTGTTGCAATTGTATTTCAAAACTTCTTTGCAATTAAACTACATCATTGTAACTTTGTGATGATTGAGTGTAGTGTAACAATTCTCATAGTTTATGTGTTCTAATGGTTGTTCTAAGTGGTTGGACCTTTTTCAACTTGCAACGAACAGAATTGTTGCAAAACTGTTCAATTGCAGCGAGTTCATCAGTTTGAGGATAATTGCTTGAATTTAAAGTTTGAGGGTGGGATTGTAATAACTAGATAAGGTCGTGAATTAAGCTGAATCTAATCATTATGATATAATTGTAAACCCAGGTGATGAAGAAGCTATGGAGGATTTCATTGCAAAGGGAGGAATGATCGGAACCGCCATCGGTCCAAAGGGGGTGATTGATTTTGATAAGGATTCTTTCAATTATCAGAAAGAATTAGAGAAAAATAAGCTCGAGCAAGAGGCCCAGAAGCTATGGTTCAGGATGAGGAACGAGGTCATTTCAGAGCTTCAGGGGAAGGGCTACGATGTTGAGTGAGGTAATTCTTGAATGGAAGCATGAAAATTTCTGATTGCTTAATTTGTGCATGTGTTTGTTCTTGTTGTGAAAGTTCTGAATATACCCATCTGCTTGAATGCTTCCTGTTTGATGCGTTTGCAGTCGTCTCTGTCATGTACTTGAATCTGAACACTAAAAGGATTAGTATTAGAGTTGAAAATTTCTGGCCTTTTGATATCAATCTCTATGGATTGGTTTTAAGTTTTAATCGATACTTGGTTCATCAATTCTCTCAAATGTTCTAACTTTTCACTAATGATCTTATGTATTCAAATTATTAACTTGCATCCAATTTCGAATGATTGTCTTTTCAATATAAAGTTCGAAAACGAAATACGATGTTTAAAAATATAAAGACTAAAATGAAACAATGTACGAAATCTTAAGGACTATCCCATGGCTCAATCCTTTTATTACCAATGTTTTTGTGAAAATTTGATGTTATCTCGGGAATGATGGAAATTTCTTAGTAGTATTATATAACTAGATTCTTGTTGAATATACT

mRNA sequence

TTTTCTTTTTTCCTCTCTAGAGTTCATATACCCAATTCCCATCCCGTGCGAAGAGAAGGCAATCGAAAAGACGCCGTGCAGTGTCTGCCGCGCTCGTCCTGCTCTCCGTTGTTGCGATTTAATTGCAAACCTGTTCCTTCGCCACTGCAACAAAGATACTGGAGGACGGGAATCGGATTCTTTAATCTCGATCGAGATCAACATTTTGGATTTCTCTTTGTTGTTTTTGGACTGTAAGCTATCCATCGCGCCGATTTTCAATTTTTCGTTTTGCTTCTTCTTCTATTGTTTCCGGATAAAATGGTGATATTTTTCTGAAATTGTTCAGTAGCTCTGTGATATTACTTAGAGTGTTAAGATTGCTACGAAATGAGACATCGCTGCGACGTTCTAGTTCTCTTATTTTAAACACTGTCAAGAGAAATCAATCTGCGAAGTTTGCGTTAAGAAATCTCCATGATTCGTAAACGCTTTCAAGAAGCTAAAACAGGCCTGCAACTGGTGAAATCGATGAGAGCCGAAAGGTTCTTGAAGAAAGTTGGATTGGGCAGAGAGGATCGTTACTTCTGGAAGCAAATTGGAAAGGCTCTGTTATTTTCGTATACTCTGATCGGCGTTGCATGGCTTTACAACGAAACATCACCATTTGGCTGGTGGACGCTGAAGCCACGGTCCAAGGCAGAGAAAGATTTGGCTCACCTCTATGAGCGTAGGGAGTTTCCATATCCAGGTGATGAAGAAGCTATGGAGGATTTCATTGCAAAGGGAGGAATGATCGGAACCGCCATCGGTCCAAAGGGGGTGATTGATTTTGATAAGGATTCTTTCAATTATCAGAAAGAATTAGAGAAAAATAAGCTCGAGCAAGAGGCCCAGAAGCTATGGTTCAGGATGAGGAACGAGGTCATTTCAGAGCTTCAGGGGAAGGGCTACGATGTTGAGTGAGGTAATTCTTGAATGGAAGCATGAAAATTTCTGATTGCTTAATTTGTGCATGTGTTTGTTCTTGTTGTGAAAGTTCTGAATATACCCATCTGCTTGAATGCTTCCTGTTTGATGCGTTTGCAGTCGTCTCTGTCATGTACTTGAATCTGAACACTAAAAGGATTAGTATTAGAGTTGAAAATTTCTGGCCTTTTGATATCAATCTCTATGGATTGGTTTTAAGTTTTAATCGATACTTGGTTCATCAATTCTCTCAAATGTTCTAACTTTTCACTAATGATCTTATGTATTCAAATTATTAACTTGCATCCAATTTCGAATGATTGTCTTTTCAATATAAAGTTCGAAAACGAAATACGATGTTTAAAAATATAAAGACTAAAATGAAACAATGTACGAAATCTTAAGGACTATCCCATGGCTCAATCCTTTTATTACCAATGTTTTTGTGAAAATTTGATGTTATCTCGGGAATGATGGAAATTTCTTAGTAGTATTATATAACTAGATTCTTGTTGAATATACT

Coding sequence (CDS)

ATGATTCGTAAACGCTTTCAAGAAGCTAAAACAGGCCTGCAACTGGTGAAATCGATGAGAGCCGAAAGGTTCTTGAAGAAAGTTGGATTGGGCAGAGAGGATCGTTACTTCTGGAAGCAAATTGGAAAGGCTCTGTTATTTTCGTATACTCTGATCGGCGTTGCATGGCTTTACAACGAAACATCACCATTTGGCTGGTGGACGCTGAAGCCACGGTCCAAGGCAGAGAAAGATTTGGCTCACCTCTATGAGCGTAGGGAGTTTCCATATCCAGGTGATGAAGAAGCTATGGAGGATTTCATTGCAAAGGGAGGAATGATCGGAACCGCCATCGGTCCAAAGGGGGTGATTGATTTTGATAAGGATTCTTTCAATTATCAGAAAGAATTAGAGAAAAATAAGCTCGAGCAAGAGGCCCAGAAGCTATGGTTCAGGATGAGGAACGAGGTCATTTCAGAGCTTCAGGGGAAGGGCTACGATGTTGAGTGA

Protein sequence

MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNETSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFDKDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE

Homology

[Close]

BLAST of Carg12410-RA vs. NCBI nr
Match: XP_022948350.1 (uncharacterized protein LOC111452054 [Cucurbita moschata] >XP_022948351.1 uncharacterized protein LOC111452054 [Cucurbita moschata] >XP_022948352.1 uncharacterized protein LOC111452054 [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 6.5e-88
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE
Sbjct: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE
Sbjct: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. NCBI nr
Match: XP_022998684.1 (uncharacterized protein LOC111493271 [Cucurbita maxima] >XP_022998685.1 uncharacterized protein LOC111493271 [Cucurbita maxima] >XP_022998686.1 uncharacterized protein LOC111493271 [Cucurbita maxima])

HSP 1 Score: 330.9 bits (847), Expect = 2.5e-87
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE
Sbjct: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDSFNYQKELE NKLEQEAQKLWFRMRNEVISELQGKGYDVE
Sbjct: 121 KDSFNYQKELENNKLEQEAQKLWFRMRNEVISELQGKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. NCBI nr
Match: XP_023523491.1 (uncharacterized protein LOC111787692 [Cucurbita pepo subsp. pepo] >XP_023523492.1 uncharacterized protein LOC111787692 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.6 bits (841), Expect = 1.2e-86
Identity = 159/162 (98.15%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE
Sbjct: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRS+AEKDLAHLYERREFPYPGDEEAMEDFI+KGGMIGTAIGPKGVIDFD
Sbjct: 61  TSPFGWWTLKPRSRAEKDLAHLYERREFPYPGDEEAMEDFISKGGMIGTAIGPKGVIDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDSFNYQKELE NKLEQEAQKLWFRMRNEVISELQGKGYDVE
Sbjct: 121 KDSFNYQKELENNKLEQEAQKLWFRMRNEVISELQGKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. NCBI nr
Match: XP_004154327.1 (PREDICTED: uncharacterized protein LOC101221969 [Cucumis sativus] >XP_011658438.1 PREDICTED: uncharacterized protein LOC101221969 [Cucumis sativus] >KGN65782.1 hypothetical protein Csa_1G528470 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 3.1e-82
Identity = 149/162 (91.98%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTG+QL+KSMRAERFLKKVGLGREDRYFWKQ+GKALL +YTLIGVAWLYNE
Sbjct: 1   MIRKRFQEAKTGMQLMKSMRAERFLKKVGLGREDRYFWKQVGKALLCTYTLIGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFI KGGMIGTAIGPKG++DFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIVKGGMIGTAIGPKGILDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDS+NYQKEL+  KLEQEAQKLWFRMRNEVISELQ KGYDVE
Sbjct: 121 KDSYNYQKELQNTKLEQEAQKLWFRMRNEVISELQEKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. NCBI nr
Match: XP_022965021.1 (uncharacterized protein LOC111464959 [Cucurbita moschata] >XP_022965022.1 uncharacterized protein LOC111464959 [Cucurbita moschata] >XP_023519188.1 uncharacterized protein LOC111782637 [Cucurbita pepo subsp. pepo] >XP_023519189.1 uncharacterized protein LOC111782637 [Cucurbita pepo subsp. pepo] >XP_023519190.1 uncharacterized protein LOC111782637 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 5.3e-82
Identity = 150/162 (92.59%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTGLQLVKSMR E+FLKKVGLGRED YFWKQIGKALL +YTLIG AWLYNE
Sbjct: 1   MIRKRFQEAKTGLQLVKSMRTEKFLKKVGLGREDGYFWKQIGKALLCTYTLIGAAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAME+FIAKGGMIGTAIGPKG++DFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEEFIAKGGMIGTAIGPKGMVDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDS+NY+KELEKNKLEQEAQKLWFRMRNEVISELQ KGYDVE
Sbjct: 121 KDSYNYEKELEKNKLEQEAQKLWFRMRNEVISELQEKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. TAIR10
Match: AT5G58920.1 (unknown protein)

HSP 1 Score: 256.9 bits (655), Expect = 8.2e-69
Identity = 114/162 (70.37%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           M+RK+FQ+AKTG++ +KSM A  +LKKVGLGR+D +FWKQ+GKALL +YT+ G+AW+YNE
Sbjct: 1   MVRKQFQQAKTGIEALKSMDANNYLKKVGLGRDDMFFWKQVGKALLCTYTIFGMAWIYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSP GWWTLKPR K E++LAHLYERREFPYPGD EAMEDF+AKGGMIGTAIGPKG+++ +
Sbjct: 61  TSPLGWWTLKPRPKEERELAHLYERREFPYPGDTEAMEDFVAKGGMIGTAIGPKGIVESE 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
            ++ NYQKE+EK K ++EAQKLW RMRNEVI+ELQ KG+++E
Sbjct: 121 GEADNYQKEMEKKKFDKEAQKLWLRMRNEVITELQEKGHNLE 162

[Close]

BLAST of Carg12410-RA vs. TrEMBL
Match: tr|A0A0A0LY68|A0A0A0LY68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528470 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.1e-82
Identity = 149/162 (91.98%), Postives = 157/162 (96.91%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTG+QL+KSMRAERFLKKVGLGREDRYFWKQ+GKALL +YTLIGVAWLYNE
Sbjct: 1   MIRKRFQEAKTGMQLMKSMRAERFLKKVGLGREDRYFWKQVGKALLCTYTLIGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFI KGGMIGTAIGPKG++DFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIVKGGMIGTAIGPKGILDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDS+NYQKEL+  KLEQEAQKLWFRMRNEVISELQ KGYDVE
Sbjct: 121 KDSYNYQKELQNTKLEQEAQKLWFRMRNEVISELQEKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. TrEMBL
Match: tr|A0A1S3C5F1|A0A1S3C5F1_CUCME (uncharacterized protein LOC103497102 OS=Cucumis melo OX=3656 GN=LOC103497102 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 4.3e-80
Identity = 145/162 (89.51%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKRFQEAKTG+QL+ SMR ERFL+KVGLGREDRYFWKQIGKALL +YT+IG AWLYNE
Sbjct: 1   MIRKRFQEAKTGMQLMNSMRVERFLRKVGLGREDRYFWKQIGKALLCTYTVIGAAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFI KGGMIGTAIGPKG++DFD
Sbjct: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIVKGGMIGTAIGPKGILDFD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KDS+NYQKEL+  KLEQEAQKLWFRMRNEVISELQ KGYDVE
Sbjct: 121 KDSYNYQKELQNAKLEQEAQKLWFRMRNEVISELQEKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. TrEMBL
Match: tr|A0A2P4J0A6|A0A2P4J0A6_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_46938 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 6.7e-73
Identity = 132/162 (81.48%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKR+QEAKTG QLVKSM A+++LKK+GLG+ED YFWKQIGKALL +YTL GVAWLYNE
Sbjct: 1   MIRKRYQEAKTGFQLVKSMNAQKYLKKIGLGKEDYYFWKQIGKALLCTYTLFGVAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSP GWWTLKPR K EK+LAHLYERREFPYPGDEEAME+FIAKGGMIGT IGPKGV++ D
Sbjct: 61  TSPLGWWTLKPRPKEEKELAHLYERREFPYPGDEEAMEEFIAKGGMIGTTIGPKGVVETD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KD+FNYQK+L+  KLEQEAQKLW RMRNEVI ELQ KG+DVE
Sbjct: 121 KDAFNYQKDLQNKKLEQEAQKLWLRMRNEVIQELQEKGHDVE 162

[Close]

BLAST of Carg12410-RA vs. TrEMBL
Match: tr|A0A2I4H027|A0A2I4H027_9ROSI (uncharacterized protein LOC109012364 OS=Juglans regia OX=51240 GN=LOC109012364 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 129/162 (79.63%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           MIRKR+QEAKTG QL+KSM A+++LKKVGLG+ED YFWKQIGKALL +YT+ G AWLYNE
Sbjct: 1   MIRKRYQEAKTGFQLMKSMNAQKYLKKVGLGKEDYYFWKQIGKALLCTYTIFGAAWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSP GWWTLKPR K EK+LAHLYERREFPYPGDEEAM++FIAKGGM+GT IGPKG I+ D
Sbjct: 61  TSPLGWWTLKPRPKEEKELAHLYERREFPYPGDEEAMQEFIAKGGMVGTTIGPKGYIETD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KD+FNYQKEL+  K EQEAQKLW RMRNEVI ELQ KGYDVE
Sbjct: 121 KDAFNYQKELQNKKFEQEAQKLWLRMRNEVIQELQEKGYDVE 162

[Close]

BLAST of Carg12410-RA vs. TrEMBL
Match: tr|A0A2I0IV27|A0A2I0IV27_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031799 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.8e-71
Identity = 127/162 (78.40%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MIRKRFQEAKTGLQLVKSMRAERFLKKVGLGREDRYFWKQIGKALLFSYTLIGVAWLYNE 60
           M+RKRFQEAKTG+  +KSM AE+ L K+G+GREDRYFWKQIGKALL +YT+IG  WLYNE
Sbjct: 1   MVRKRFQEAKTGIAYIKSMDAEKILSKIGMGREDRYFWKQIGKALLCTYTIIGAVWLYNE 60

Query: 61  TSPFGWWTLKPRSKAEKDLAHLYERREFPYPGDEEAMEDFIAKGGMIGTAIGPKGVIDFD 120
           TSP GWWTLKPR K EK+LAHLYERREFPYPGD+EAME+FIAKGGMIGTAIGPKG ++ D
Sbjct: 61  TSPLGWWTLKPRPKEEKELAHLYERREFPYPGDKEAMEEFIAKGGMIGTAIGPKGSVESD 120

Query: 121 KDSFNYQKELEKNKLEQEAQKLWFRMRNEVISELQGKGYDVE 163
           KD++NYQKEL+  K EQEAQKLWFRMRNEVI ELQ KGYD+E
Sbjct: 121 KDAYNYQKELQTKKFEQEAQKLWFRMRNEVIQELQEKGYDIE 162

The following BLAST results are available for this feature:

BLAST of Carg12410-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948350.1	6.5e-88	100.00	uncharacterized protein LOC111452054 [Cucurbita moschata] >XP_022948351.1 unchar...	[more]
XP_022998684.1	2.5e-87	99.38	uncharacterized protein LOC111493271 [Cucurbita maxima] >XP_022998685.1 uncharac...	[more]
XP_023523491.1	1.2e-86	98.15	uncharacterized protein LOC111787692 [Cucurbita pepo subsp. pepo] >XP_023523492....	[more]
XP_004154327.1	3.1e-82	91.98	PREDICTED: uncharacterized protein LOC101221969 [Cucumis sativus] >XP_011658438....	[more]
XP_022965021.1	5.3e-82	92.59	uncharacterized protein LOC111464959 [Cucurbita moschata] >XP_022965022.1 unchar...	[more]

BLAST of Carg12410-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58920.1	8.2e-69	70.37	unknown protein	[more]

BLAST of Carg12410-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12410-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY68\|A0A0A0LY68_CUCSA	2.1e-82	91.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G528470 PE=4 SV=1	[more]
tr\|A0A1S3C5F1\|A0A1S3C5F1_CUCME	4.3e-80	89.51	uncharacterized protein LOC103497102 OS=Cucumis melo OX=3656 GN=LOC103497102 PE=...	[more]
tr\|A0A2P4J0A6\|A0A2P4J0A6_QUESU	6.7e-73	81.48	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_46938 PE=4 SV=1	[more]
tr\|A0A2I4H027\|A0A2I4H027_9ROSI	1.6e-71	79.63	uncharacterized protein LOC109012364 OS=Juglans regia OX=51240 GN=LOC109012364 P...	[more]
tr\|A0A2I0IV27\|A0A2I0IV27_PUNGR	2.8e-71	78.40	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031799 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12410	Carg12410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12410-RA	Carg12410-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12410-RA.exon.1	Carg12410-RA.exon.1	exon
Carg12410-RA.exon.2	Carg12410-RA.exon.2	exon
Carg12410-RA.exon.3	Carg12410-RA.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12410-RA.five_prime_UTR.1	Carg12410-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12410-RA.CDS.1	Carg12410-RA.CDS.1	CDS
Carg12410-RA.CDS.2	Carg12410-RA.CDS.2	CDS
Carg12410-RA.CDS.3	Carg12410-RA.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12410-RA.three_prime_UTR.1	Carg12410-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36077	FAMILY NOT NAMED	coord: 1..162