Carg12397-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12397-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	G patch domain protein
Location	Cucurbita_argyrosperma_scaffold_074 : 747291 .. 749768 (+)
Sequence length	1656

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATTATAATAATTAGGATTATGCTTACTATTATTGTCAGTTACACCATATTTATCTTAGTCAAATCTACACTTAATAATACACAAATTTCAATGAGATTATTTATTTTGAACACTGACCGAAACGCCACGGCTGTGCTCCGGCGAACGGACCACCACTGTAACCGTAAAAATATTTCGTTGGAGTGTTTCATAAAATACTCTGATCTCTCTGTTTATTGGTCGGTCCCTCCACTTGTTCCTACTCTATAAAGTCCAGACTTACGGCGCATAAATTTCCAATTCTGTCGCTCTTTCTTATTGTCTCTGTATCAGCACCAAGGTGCGGCCATGGCGGTCGACCCAGAAGCCGGAGAGTTCAAGTTTTACACTCAGTTTCAGACAGAGCATGGAGATAATAAGCAGAGCCCCTTTGAAGGAGACAATTGGTCGAGCTATTTCTCGCCGGTGGAGTCTGAGATTGGTTCCTTTGAAATTGAGAGCGATAAAGATGATGGTGACGGCGGCGACGAGGATTACACGGCGGAATTGAGTCGTCGGATGGCTCAATTCATGCTTCAAGATGATGATAACTCCTCAACTGCAAGATTTCAATCAGAGATTCAGAATAAGGTATTGAATTTATATAAACGTGGAAGGTTTCAAGGGGGTTTGTGAAATTCTCTGTTTTTTGATTTTGTGGGCTTGTTCTGTTTCTTGTATACAGTCATGGGGTTTGTCTGGTTCGCCTATTTCAACGCTGTGGTCACCTTTAGGCTCGAGCAATGGAAGCAGCTATGGCAGCCCAGAAGGGCCTTCGAAGGAGCCGTCGCCGCCAACCACACCGATGGTTGCAGAGCGGCGGGGGCTCGACATATCACAGAACGTTTTCACCAAATTAGAGAAGATGAAGAAGGTTAGCACAAATGGTAAATCAATCCAAACAAGGCCCCAAGATGAAGAAAATGGATCCTCTTCTTCTTCCAAAGACCAAACAAGAGCTCTCAAAGTGAGATGAGATTCAAATCCCACAAATTTGTCCTTCACAAATCTCTTTTACTCTCTTTTTTTTTTTTTTTTTTTTTTGCTGATTCAAGCTCAACCCTGTTTATAGAATCAGAGGCGGAAGCAGAACCAGCAGTTTATAAAGCAAAAAGGTTCAGCCGCCATAATGGCCAAGCAAGCTCAAGGAAGCTCATCCCAAGGCAATTCAGGGGGGAAACCAGGAGGGTTATCAGGGACTGGTGTTTTCTTGCCCCGCCATGTGAACTACAACCGCTCAGCCCCATCTCCTCAGCCACCACAGCCGCCGAAGAAAACAGGTAAACTCCATTTTCATTCGATAGCTAGCTAATTTTTACATCGTTTTCTAAGTGGGTTAATTAGCTAACACCATTAGTTGAGACTTTCCCATCAATGAATTGCCATTCCAACCATTCCTCGTGAGGCATCTTGGACTCTTCCTCATACCCCTGTTTTTCCTGATTCATAGAGATTCCGTGCCCTTCCAAACACCCTCTGAATCTATCAAATCTTTAACCATTCACGGTTGGTCCAATCAAATTTGTCCGCTTCTTTGGTGGAATCTCCATCCATCTCCTTAAAACCAGACCGCTTTGTGGTCAAAAGGAGCTGAATGAAAACGACACCCGTCTGAATCTTAAACAACTTGTATAGCCCACTATGGTCTAATTCTTTAATGGGTAGATAGATATGCGTGTCTTCCTCTACAAGGAAAAAAACACTAACGAATTTACCATTTCCTACATTTCCCCATGTCAGGCTCCTCCACTGTTCTCATACCCGTGAGAGTCTTACAAGCCTTACAACTTCACTACAACAGAATGGACGACGAGACAAGACAAAAAATCACAGGCTTCACAGCACTTAGAGGTAATTTTCCAATTTCCACCACAAAATTCTCTCTATGGCATTTTCACAAACAGTTAATGTGCATTCCACAAACACTTCGCAATTTCCCCTCTTTTGTCTCAATTCGATCTGGGTGATTCTCCTTTTCATCTAAGAACATACTCCTATTTGCTAATATGAACAGAAGCAGCAGCGGGTGTGAGAATAGCTACACAAACCGTTAAGAAAAGCCAACCGGTAGCGGCGGCGGCGGCAGCAGAAGCAGCAACAAGCCAAACCGACATAGACCTTCCGCAAGAATGGACATATTAATTGCTTTAAACAACTGGCGAGGGGCCATTTCGTCTCTGGAGCACAAATCTGAATCTTTTTGGCAGTTTTCTAGAGAACATGCAGCTGATGTTTATGGAATGGTAATAAATGCCCCAAATGGACGGAGAAGAAGACGAAATGAAATTACGAGTGGTGAAACGCCGTCGTTTTCTTTACTGTCTCAGGGGCAAAAACGTAAATAATGTTCGGCAAAAATGGGATTTGCTTAGATGAAATCCTTTTGTAATAATTTTGAAGCAAGGTTGTACCTCTTCAATAATTTTTTAAATAATTAAATTATTTTTGTTTGGGTC

mRNA sequence

AATAATTATAATAATTAGGATTATGCTTACTATTATTGTCAGTTACACCATATTTATCTTAGTCAAATCTACACTTAATAATACACAAATTTCAATGAGATTATTTATTTTGAACACTGACCGAAACGCCACGGCTGTGCTCCGGCGAACGGACCACCACTGTAACCGTAAAAATATTTCGTTGGAGTGTTTCATAAAATACTCTGATCTCTCTGTTTATTGGTCGGTCCCTCCACTTGTTCCTACTCTATAAAGTCCAGACTTACGGCGCATAAATTTCCAATTCTGTCGCTCTTTCTTATTGTCTCTGTATCAGCACCAAGGTGCGGCCATGGCGGTCGACCCAGAAGCCGGAGAGTTCAAGTTTTACACTCAGTTTCAGACAGAGCATGGAGATAATAAGCAGAGCCCCTTTGAAGGAGACAATTGGTCGAGCTATTTCTCGCCGGTGGAGTCTGAGATTGGTTCCTTTGAAATTGAGAGCGATAAAGATGATGGTGACGGCGGCGACGAGGATTACACGGCGGAATTGAGTCGTCGGATGGCTCAATTCATGCTTCAAGATGATGATAACTCCTCAACTGCAAGATTTCAATCAGAGATTCAGAATAAGTCATGGGGTTTGTCTGGTTCGCCTATTTCAACGCTGTGGTCACCTTTAGGCTCGAGCAATGGAAGCAGCTATGGCAGCCCAGAAGGGCCTTCGAAGGAGCCGTCGCCGCCAACCACACCGATGGTTGCAGAGCGGCGGGGGCTCGACATATCACAGAACGTTTTCACCAAATTAGAGAAGATGAAGAAGGTTAGCACAAATGGTAAATCAATCCAAACAAGGCCCCAAGATGAAGAAAATGGATCCTCTTCTTCTTCCAAAGACCAAACAAGAGCTCTCAAAAATCAGAGGCGGAAGCAGAACCAGCAGTTTATAAAGCAAAAAGGTTCAGCCGCCATAATGGCCAAGCAAGCTCAAGGAAGCTCATCCCAAGGCAATTCAGGGGGGAAACCAGGAGGGTTATCAGGGACTGGTGTTTTCTTGCCCCGCCATGTGAACTACAACCGCTCAGCCCCATCTCCTCAGCCACCACAGCCGCCGAAGAAAACAGGCTCCTCCACTGTTCTCATACCCGTGAGAGTCTTACAAGCCTTACAACTTCACTACAACAGAATGGACGACGAGACAAGACAAAAAATCACAGGCTTCACAGCACTTAGAGAAGCAGCAGCGGGTGTGAGAATAGCTACACAAACCGTTAAGAAAAGCCAACCGGTAGCGGCGGCGGCGGCAGCAGAAGCAGCAACAAGCCAAACCGACATAGACCTTCCGCAAGAATGGACATATTAATTGCTTTAAACAACTGGCGAGGGGCCATTTCGTCTCTGGAGCACAAATCTGAATCTTTTTGGCAGTTTTCTAGAGAACATGCAGCTGATGTTTATGGAATGGTAATAAATGCCCCAAATGGACGGAGAAGAAGACGAAATGAAATTACGAGTGGTGAAACGCCGTCGTTTTCTTTACTGTCTCAGGGGCAAAAACGTAAATAATGTTCGGCAAAAATGGGATTTGCTTAGATGAAATCCTTTTGTAATAATTTTGAAGCAAGGTTGTACCTCTTCAATAATTTTTTAAATAATTAAATTATTTTTGTTTGGGTC

Coding sequence (CDS)

ATGGCGGTCGACCCAGAAGCCGGAGAGTTCAAGTTTTACACTCAGTTTCAGACAGAGCATGGAGATAATAAGCAGAGCCCCTTTGAAGGAGACAATTGGTCGAGCTATTTCTCGCCGGTGGAGTCTGAGATTGGTTCCTTTGAAATTGAGAGCGATAAAGATGATGGTGACGGCGGCGACGAGGATTACACGGCGGAATTGAGTCGTCGGATGGCTCAATTCATGCTTCAAGATGATGATAACTCCTCAACTGCAAGATTTCAATCAGAGATTCAGAATAAGTCATGGGGTTTGTCTGGTTCGCCTATTTCAACGCTGTGGTCACCTTTAGGCTCGAGCAATGGAAGCAGCTATGGCAGCCCAGAAGGGCCTTCGAAGGAGCCGTCGCCGCCAACCACACCGATGGTTGCAGAGCGGCGGGGGCTCGACATATCACAGAACGTTTTCACCAAATTAGAGAAGATGAAGAAGGTTAGCACAAATGGTAAATCAATCCAAACAAGGCCCCAAGATGAAGAAAATGGATCCTCTTCTTCTTCCAAAGACCAAACAAGAGCTCTCAAAAATCAGAGGCGGAAGCAGAACCAGCAGTTTATAAAGCAAAAAGGTTCAGCCGCCATAATGGCCAAGCAAGCTCAAGGAAGCTCATCCCAAGGCAATTCAGGGGGGAAACCAGGAGGGTTATCAGGGACTGGTGTTTTCTTGCCCCGCCATGTGAACTACAACCGCTCAGCCCCATCTCCTCAGCCACCACAGCCGCCGAAGAAAACAGGCTCCTCCACTGTTCTCATACCCGTGAGAGTCTTACAAGCCTTACAACTTCACTACAACAGAATGGACGACGAGACAAGACAAAAAATCACAGGCTTCACAGCACTTAGAGAAGCAGCAGCGGGTGTGAGAATAGCTACACAAACCGTTAAGAAAAGCCAACCGGTAGCGGCGGCGGCGGCAGCAGAAGCAGCAACAAGCCAAACCGACATAGACCTTCCGCAAGAATGGACATATTAA

Protein sequence

MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGDEDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWSPLGSSNGSSYGSPEGPSKEPSPPTTPMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEENGSSSSSKDQTRALKNQRRKQNQQFIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGVRIATQTVKKSQPVAAAAAAEAATSQTDIDLPQEWTY

Homology

[Close]

BLAST of Carg12397-RA vs. NCBI nr
Match: XP_022948629.1 (uncharacterized protein LOC111452251 [Cucurbita moschata])

HSP 1 Score: 520.8 bits (1340), Expect = 3.5e-144
Identity = 334/336 (99.40%), Postives = 334/336 (99.40%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60
           MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD
Sbjct: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60

Query: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120
           EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX
Sbjct: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180
           XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240
           XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN
Sbjct: 181 XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240

Query: 241 YNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV 300
           YNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV
Sbjct: 241 YNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV 300

Query: 301 RIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
           RIATQTVKKSQPVAAAXXX AATSQTDIDLP EWTY
Sbjct: 301 RIATQTVKKSQPVAAAXXXEAATSQTDIDLPHEWTY 336

[Close]

BLAST of Carg12397-RA vs. NCBI nr
Match: XP_023523141.1 (uncharacterized protein LOC111787388 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525849.1 uncharacterized protein LOC111789344 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 487.3 bits (1253), Expect = 4.3e-134
Identity = 318/336 (94.64%), Postives = 318/336 (94.64%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60
           MAVDPEAGEFKFYTQFQTE GDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD
Sbjct: 1   MAVDPEAGEFKFYTQFQTERGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60

Query: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120
           EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX
Sbjct: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180
           XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240
           XXXXXXXXXXXXXXXXXX KQKGSAAIM KQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXKQKGSAAIMGKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240

Query: 241 YNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV 300
           YNRSAPSPQ         SSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALR AAAGV
Sbjct: 241 YNRSAPSPQXXXXXXXXXSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALRGAAAGV 300

Query: 301 RIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
           RIATQTVKKS PVAAA    AATSQTDIDLPQEWTY
Sbjct: 301 RIATQTVKKSHPVAAAAAAEAATSQTDIDLPQEWTY 336

[Close]

BLAST of Carg12397-RA vs. NCBI nr
Match: XP_022998907.1 (uncharacterized protein LOC111493430 [Cucurbita maxima])

HSP 1 Score: 469.2 bits (1206), Expect = 1.2e-128
Identity = 288/337 (85.46%), Postives = 290/337 (86.05%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60
           MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGS EIESDKDDGDGGD
Sbjct: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSSEIESDKDDGDGGD 60

Query: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120
           EDYTAELSRRMAQFMLQDDDN STA FQSE QNKSWGLSGSPISTLWXXXXXXXXXXXXX
Sbjct: 61  EDYTAELSRRMAQFMLQDDDNPSTASFQSETQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180
           XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDE        
Sbjct: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEENGYSSSS 180

Query: 181 XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240
                             +KQKGSAAIM KQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN
Sbjct: 181 KDQTRALKNQRRKQNQQFMKQKGSAAIMGKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240

Query: 241 YNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV 300
           YNRSAPSPQ         SSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV
Sbjct: 241 YNRSAPSPQXXXXXXXXXSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGV 300

Query: 301 RIATQTVKKSQPVAA-AXXXXAATSQTDIDLPQEWTY 337
           RIATQ +KKS PVAA  XXXX   SQTDIDLPQEWTY
Sbjct: 301 RIATQPIKKSHPVAAXXXXXXXXXSQTDIDLPQEWTY 337

[Close]

BLAST of Carg12397-RA vs. NCBI nr
Match: XP_023523142.1 (uncharacterized protein LOC111787388 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023525850.1 uncharacterized protein LOC111789344 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 2.8e-93
Identity = 242/245 (98.78%), Postives = 242/245 (98.78%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60
           MAVDPEAGEFKFYTQFQTE GDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD
Sbjct: 1   MAVDPEAGEFKFYTQFQTERGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGD 60

Query: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120
           EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX
Sbjct: 61  EDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180
           XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240
           XXXXXXXXXXXXXXXXXX KQKGSAAIM KQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN
Sbjct: 181 XXXXXXXXXXXXXXXXXXXKQKGSAAIMGKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVN 240

Query: 241 YNRSA 246
           YNRSA
Sbjct: 241 YNRSA 245

[Close]

BLAST of Carg12397-RA vs. NCBI nr
Match: XP_008457429.1 (PREDICTED: uncharacterized protein LOC103497120 isoform X1 [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 9.7e-86
Identity = 246/348 (70.69%), Postives = 262/348 (75.29%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYF----------SPVESEIGSFEIE 60
           MA D E  E KF ++FQ EHGD +Q+PFEGD+WSSYF          SPVESEIGS EIE
Sbjct: 1   MAADQEGRELKFNSKFQIEHGDKQQNPFEGDSWSSYFGRSDSFLSFNSPVESEIGSNEIE 60

Query: 61  SDKDDGDGGDEDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXX 120
           SD+DDG+   +DYTAELSRRMAQ+MLQD        FQSEIQNKSWGLSGSPIS   XXX
Sbjct: 61  SDRDDGENDGDDYTAELSRRMAQYMLQDXXXXXXXSFQSEIQNKSWGLSGSPISXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQ 180
           XXXXXXXXXXXXXXXXXXXXXXXX+V ER GLDIS NVF+KLEKMKKVS +GKSIQT  Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVVEERGGLDISHNVFSKLEKMKKVSIHGKSIQTSTQ 180

Query: 181 --DEXXXXXXXXXXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGL 240
             +   XXXXXXXXXXXXXXXXXXXXXXXX             AQGSS Q NSG K GG 
Sbjct: 181 IGETGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGSSLQANSGAKSGGP 240

Query: 241 SGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKIT 300
           SGTGVFLPRHVNYNR AP PQP   PKK G STVLIPVRVLQALQ HY+RMDDETRQKIT
Sbjct: 241 SGTGVFLPRHVNYNRPAPCPQPXXXPKKKGCSTVLIPVRVLQALQHHYDRMDDETRQKIT 300

Query: 301 GFTALREAAAGVRIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
           GFTALREAAA  R  + TVKKS    AA     ATSQ D+ LPQEWTY
Sbjct: 301 GFTALREAAANARTTSHTVKKSHTGTAAATATTATSQIDVGLPQEWTY 348

[Close]

BLAST of Carg12397-RA vs. TAIR10
Match: AT5G59050.1 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-07
Identity = 103/325 (31.69%), Postives = 142/325 (43.69%), Query Frame = 0


Query: 26  SPFEGDNWSSYFSPVESEIG----SFEIESDKDDGDGGDEDYTAELSRRMAQFMLQDDDN 85
           +PF   +  ++F+P  S +     S E +S K   +  +++Y  EL+R+M  +MLQDD  
Sbjct: 14  NPFTSFSEPTFFTPTTSSLRPDFVSDEPDSPKAKNEDEEDEYITELTRQMTNYMLQDD-- 73

Query: 86  SSTARFQSEIQNKSWGL-SGSPISTLWXXXXXXXXXXXXXXXXXXXXXXXXXXXMVAERR 145
                   E   KS G  SGSP STLW                XXXXXXXXXXX      
Sbjct: 74  --------EKHQKSCGSGSGSPQSTLWSPFASGLSSPIGPSREXXXXXXXXXXXXXXXXX 133

Query: 146 GLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXXXXXXXXXXXXXXXXXXXXIK 205
                        K   +    +SIQ   Q    XXXXXXXXXX                
Sbjct: 134 XXXXXPVTIPFQSKQALIDDQIRSIQANFQKIKKXXXXXXXXXXDVLGHKARNYHHLHQN 193

Query: 206 QKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPR-HVNYNRSAPSPQPPQPPKKTGS 265
           Q+  + + A    GS S+  SG       GTGVFLPR H     S          KK+G 
Sbjct: 194 QRPRSGVKAVFVDGSGSRTGSG-------GTGVFLPRGHGTVVESR---------KKSGC 253

Query: 266 STVLIPVRVLQALQLHYNRM--DDETRQKITGF-TALREAAAGVRIATQ---TVKKSQPV 325
           STV+IP RV++AL++H++++         I  F  AL  +    +I +    ++ + Q  
Sbjct: 254 STVIIPARVVEALKVHFDKLGVPSTFSSDIPPFHDALLVSMNNKKIKSNKNTSLSRVQSG 312

Query: 326 AAAXXXXAATSQTD--IDLPQEWTY 337
           +      +A S  +   DLPQEWTY
Sbjct: 314 SPYEMEMSAESHQEPPADLPQEWTY 312

[Close]

BLAST of Carg12397-RA vs. TAIR10
Match: AT4G02830.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 8.6e-04
Identity = 39/113 (34.51%), Postives = 50/113 (44.25%), Query Frame = 0


Query: 229 SGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQL--HYNRMDDETRQK 288
           SGTGVFLP   ++           P KKT  S VL+P RV+QAL L  H N +    R +
Sbjct: 96  SGTGVFLPATASH----------PPTKKTACSPVLLPTRVVQALNLNIHNNGIHISPRPE 155

Query: 289 ITGFTALREAAAGVRIATQTVKKSQPVAAAXXXXAATSQTDID---LPQEWTY 337
           I      RE          + KKS+ +A       A +  D     LP+EW Y
Sbjct: 156 I------RE--------NDSKKKSEMLATTPIKIEAENPIDSPEKLLPEEWIY 184

[Close]

BLAST of Carg12397-RA vs. TrEMBL
Match: tr|A0A1S3C665|A0A1S3C665_CUCME (uncharacterized protein LOC103497120 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497120 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.4e-86
Identity = 246/348 (70.69%), Postives = 262/348 (75.29%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYF----------SPVESEIGSFEIE 60
           MA D E  E KF ++FQ EHGD +Q+PFEGD+WSSYF          SPVESEIGS EIE
Sbjct: 1   MAADQEGRELKFNSKFQIEHGDKQQNPFEGDSWSSYFGRSDSFLSFNSPVESEIGSNEIE 60

Query: 61  SDKDDGDGGDEDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXX 120
           SD+DDG+   +DYTAELSRRMAQ+MLQD        FQSEIQNKSWGLSGSPIS   XXX
Sbjct: 61  SDRDDGENDGDDYTAELSRRMAQYMLQDXXXXXXXSFQSEIQNKSWGLSGSPISXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQ 180
           XXXXXXXXXXXXXXXXXXXXXXXX+V ER GLDIS NVF+KLEKMKKVS +GKSIQT  Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVVEERGGLDISHNVFSKLEKMKKVSIHGKSIQTSTQ 180

Query: 181 --DEXXXXXXXXXXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGL 240
             +   XXXXXXXXXXXXXXXXXXXXXXXX             AQGSS Q NSG K GG 
Sbjct: 181 IGETGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQGSSLQANSGAKSGGP 240

Query: 241 SGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKIT 300
           SGTGVFLPRHVNYNR AP PQP   PKK G STVLIPVRVLQALQ HY+RMDDETRQKIT
Sbjct: 241 SGTGVFLPRHVNYNRPAPCPQPXXXPKKKGCSTVLIPVRVLQALQHHYDRMDDETRQKIT 300

Query: 301 GFTALREAAAGVRIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
           GFTALREAAA  R  + TVKKS    AA     ATSQ D+ LPQEWTY
Sbjct: 301 GFTALREAAANARTTSHTVKKSHTGTAAATATTATSQIDVGLPQEWTY 348

[Close]

BLAST of Carg12397-RA vs. TrEMBL
Match: tr|A0A0A0M0L9|A0A0A0M0L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525320 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 235/325 (72.31%), Postives = 249/325 (76.62%), Query Frame = 0


Query: 24  KQSPFEGDNWSSYF----------SPVESEIGSFEIESDKDDGDGGDEDYTAELSRRMAQ 83
           +Q+PFEGD+W SYF          SPVESEIGS+EIESD+DDG+   +DYTAELSRRMAQ
Sbjct: 2   QQNPFEGDSWPSYFGRSDSFLSFNSPVESEIGSYEIESDRDDGENDGDDYTAELSRRMAQ 61

Query: 84  FMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXXXXXXXXXXXXXXX 143
           +MLQDDDNSST  FQSEIQNKSWGLSGSPIST  XXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 62  YMLQDDDNSSTTSFQSEIQNKSWGLSGSPISTXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121

Query: 144 XMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQ--DEXXXXXXXXXXXXXXXXXXX 203
           X+V E   LDIS NVF+KLEKMKKVS NGKSIQT  Q  +   XXXXXXXXXXXXXXXXX
Sbjct: 122 XVVEECGELDISHNVFSKLEKMKKVSINGKSIQTSTQIGETGSXXXXXXXXXXXXXXXXX 181

Query: 204 XXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGLSGTGVFLPRHVNYNRSAPSPQPP 263
           XXXXXXX        I  KQAQGSS Q NSG K  G SGTGVFLPRHVNY+R AP PQPP
Sbjct: 182 XXXXXXXXXXXXXXXIQVKQAQGSSLQANSGAKSVGPSGTGVFLPRHVNYSRPAPCPQPP 241

Query: 264 QPPKKTGSSTVLIPVRVLQALQLHYNRMDDETRQKITGFTALREAAAGVRIATQTVKKSQ 323
           QPPKK G STVLIPVRVLQALQ HY+RMDDETRQKITGFTALREAAA  R          
Sbjct: 242 QPPKKKGCSTVLIPVRVLQALQHHYDRMDDETRQKITGFTALREAAANARXXXXXXXXXX 301

Query: 324 PVAAAXXXXAATSQTDIDLPQEWTY 337
                XXXX      D+ LPQEWTY
Sbjct: 302 XXXXXXXXXXXXXXIDVGLPQEWTY 326

[Close]

BLAST of Carg12397-RA vs. TrEMBL
Match: tr|A0A1S3C6T0|A0A1S3C6T0_CUCME (uncharacterized protein LOC103497120 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497120 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.1e-48
Identity = 178/257 (69.26%), Postives = 191/257 (74.32%), Query Frame = 0


Query: 1   MAVDPEAGEFKFYTQFQTEHGDNKQSPFEGDNWSSYF----------SPVESEIGSFEIE 60
           MA D E  E KF ++FQ EHGD +Q+PFEGD+WSSYF          SPVESEIGS EIE
Sbjct: 1   MAADQEGRELKFNSKFQIEHGDKQQNPFEGDSWSSYFGRSDSFLSFNSPVESEIGSNEIE 60

Query: 61  SDKDDGDGGDEDYTAELSRRMAQFMLQDDDNSSTARFQSEIQNKSWGLSGSPISTLWXXX 120
           SD+DDG+   +DYTAELSRRMAQ+MLQD        FQSEIQNKSWGLSGSPIS   XXX
Sbjct: 61  SDRDDGENDGDDYTAELSRRMAQYMLQDXXXXXXXSFQSEIQNKSWGLSGSPISXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXMVAERRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQ 180
           XXXXXXXXXXXXXXXXXXXXXXXX+V ER GLDIS NVF+KLEKMKKVS +GKSIQT  Q
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXVVEERGGLDISHNVFSKLEKMKKVSIHGKSIQTSTQ 180

Query: 181 --DEXXXXXXXXXXXXXXXXXXXXXXXXXXIKQKGSAAIMAKQAQGSSSQGNSGGKPGGL 240
             +   XXXXXXXXXXXXXXXXXXXXXXXX                SS Q NSG K GG 
Sbjct: 181 IGETGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLQANSGAKSGGP 240

Query: 241 SGTGVFLPRHVNYNRSA 246
           SGTGVFLPRHVNYNR A
Sbjct: 241 SGTGVFLPRHVNYNRPA 257

[Close]

BLAST of Carg12397-RA vs. TrEMBL
Match: tr|A0A2I4E0R1|A0A2I4E0R1_9ROSI (uncharacterized protein LOC108985232 isoform X5 OS=Juglans regia OX=51240 GN=LOC108985232 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 94/353 (26.63%), Postives = 137/353 (38.81%), Query Frame = 0


Query: 20  HGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGDEDYTAELSRRMAQFMLQDD 79
           HG   +S F         SPVES++GS + ESD+DD      DY AEL+R+M+ +MLQ+D
Sbjct: 51  HGHGNESVFSN-------SPVESDLGSADTESDRDD------DYIAELTRQMSHYMLQED 110

Query: 80  DNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXXXXXXXXXXXXXXXXMVAE- 139
            + ++    +E   K+WGL+GSP STLW                            +   
Sbjct: 111 HDQNSLPC-TEKMEKTWGLAGSPQSTLWPPLGSSHGSPHIGSSQEDPFRYGTYDEGLRSS 170

Query: 140 --RRGLDISQNVFTKLEKMKKVSTNGKSIQTRPQDEXXXXXXXXXXXXXXXXXXXXXXXX 199
             + G+ ++ N     ++++ +     + Q  P                           
Sbjct: 171 SFKPGVGLNSNPALTDDQLRAIQVRAMNQQDSPN---WPGRQAKAPTRQPEQLRDQQPDQ 230

Query: 200 XXIKQKGSAAI----------------------------MAKQAQGSSSQ-----GNSGG 259
              +QKG   I                               Q +G S+      G    
Sbjct: 231 QVHEQKGGLCINFGRSLDGGKSRTTNPWTQSPTQREPQVKCNQQKGLSAMRMFVLGGESS 290

Query: 260 KPGGLSGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMDDET 319
                +GTGVFLPR + Y+         +P KK G S V IP RV+QALQLH+++M  + 
Sbjct: 291 SESSCNGTGVFLPRGIWYS--------SEPRKKPGCSNVFIPARVVQALQLHFDQMGVKP 350

Query: 320 RQKITGFTALREAAAGVRIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
           R K  G   L+ AA G        K+ +    A     A S   + LPQEW Y
Sbjct: 351 RTK-AGGCPLQLAADGWMGRRNDSKQKRQQRTA----PAMSHHHMGLPQEWKY 373

[Close]

BLAST of Carg12397-RA vs. TrEMBL
Match: tr|A0A2I4E0R0|A0A2I4E0R0_9ROSI (uncharacterized protein LOC108985232 isoform X4 OS=Juglans regia OX=51240 GN=LOC108985232 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.0e-12
Identity = 94/356 (26.40%), Postives = 138/356 (38.76%), Query Frame = 0


Query: 20  HGDNKQSPFEGDNWSSYFSPVESEIGSFEIESDKDDGDGGDEDYTAELSRRMAQFMLQDD 79
           HG   +S F         SPVES++GS + ESD+DD      DY AEL+R+M+ +MLQ+D
Sbjct: 51  HGHGNESVFSN-------SPVESDLGSADTESDRDD------DYIAELTRQMSHYMLQED 110

Query: 80  DNSSTARFQSEIQNKSWGLSGSPISTLWXXXXXXXXXXXXXXXXXXXXXXXXXXXMVAE- 139
            + ++    +E   K+WGL+GSP STLW                            +   
Sbjct: 111 HDQNSLPC-TEKMEKTWGLAGSPQSTLWPPLGSSHGSPHIGSSQEDPFRYGTYDEGLRSS 170

Query: 140 --RRGLDISQNVFTKLEKMKKVST--NGKSIQTRPQDEXXXXXXXXXXXXXXXXXXXXXX 199
             + G+ ++ N     ++++ +      K      QD                       
Sbjct: 171 SFKPGVGLNSNPALTDDQLRAIQVFYTLKQRAMNQQDSPNWPGRQAKAPTRQPEQLRDQQ 230

Query: 200 XXXXI-KQKGSAAI----------------------------MAKQAQGSSSQ-----GN 259
               + +QKG   I                               Q +G S+      G 
Sbjct: 231 PDQQVHEQKGGLCINFGRSLDGGKSRTTNPWTQSPTQREPQVKCNQQKGLSAMRMFVLGG 290

Query: 260 SGGKPGGLSGTGVFLPRHVNYNRSAPSPQPPQPPKKTGSSTVLIPVRVLQALQLHYNRMD 319
                   +GTGVFLPR + Y+         +P KK G S V IP RV+QALQLH+++M 
Sbjct: 291 ESSSESSCNGTGVFLPRGIWYS--------SEPRKKPGCSNVFIPARVVQALQLHFDQMG 350

Query: 320 DETRQKITGFTALREAAAGVRIATQTVKKSQPVAAAXXXXAATSQTDIDLPQEWTY 337
            + R K  G     +   G R  ++  K+ Q  A       A S   + LPQEW Y
Sbjct: 351 VKPRTKAGGCPLQLDGWMGRRNDSKQ-KRQQRTA------PAMSHHHMGLPQEWKY 377

The following BLAST results are available for this feature:

BLAST of Carg12397-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948629.1	3.5e-144	99.40	uncharacterized protein LOC111452251 [Cucurbita moschata]	[more]
XP_023523141.1	4.3e-134	94.64	uncharacterized protein LOC111787388 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022998907.1	1.2e-128	85.46	uncharacterized protein LOC111493430 [Cucurbita maxima]	[more]
XP_023523142.1	2.8e-93	98.78	uncharacterized protein LOC111787388 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_008457429.1	9.7e-86	70.69	PREDICTED: uncharacterized protein LOC103497120 isoform X1 [Cucumis melo]	[more]

BLAST of Carg12397-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59050.1	1.7e-07	31.69	unknown protein	[more]
AT4G02830.1	8.6e-04	34.51	unknown protein	[more]

BLAST of Carg12397-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12397-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C665\|A0A1S3C665_CUCME	6.4e-86	70.69	uncharacterized protein LOC103497120 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0M0L9\|A0A0A0M0L9_CUCSA	1.1e-77	72.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525320 PE=4 SV=1	[more]
tr\|A0A1S3C6T0\|A0A1S3C6T0_CUCME	3.1e-48	69.26	uncharacterized protein LOC103497120 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4E0R1\|A0A2I4E0R1_9ROSI	1.6e-12	26.63	uncharacterized protein LOC108985232 isoform X5 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2I4E0R0\|A0A2I4E0R0_9ROSI	8.0e-12	26.40	uncharacterized protein LOC108985232 isoform X4 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12397	Carg12397	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12397-RA	Carg12397-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12397-RA.exon.1	Carg12397-RA.exon.1	exon
Carg12397-RA.exon.2	Carg12397-RA.exon.2	exon
Carg12397-RA.exon.3	Carg12397-RA.exon.3	exon
Carg12397-RA.exon.4	Carg12397-RA.exon.4	exon
Carg12397-RA.exon.5	Carg12397-RA.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12397-RA.five_prime_UTR.1	Carg12397-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12397-RA.CDS.1	Carg12397-RA.CDS.1	CDS
Carg12397-RA.CDS.2	Carg12397-RA.CDS.2	CDS
Carg12397-RA.CDS.3	Carg12397-RA.CDS.3	CDS
Carg12397-RA.CDS.4	Carg12397-RA.CDS.4	CDS
Carg12397-RA.CDS.5	Carg12397-RA.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12397-RA.three_prime_UTR.1	Carg12397-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..123
None	No IPR available	PANTHER	PTHR33356	FAMILY NOT NAMED	coord: 1..336