Carg12350-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12350-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger protein CONSTANS-LIKE 3-like
Location	Cucurbita_argyrosperma_scaffold_074 : 453313 .. 454010 (+)
Sequence length	609

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Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGGTAATTAATTTTATTAATTTATTTTTTTTAATTTTATGTATATAAAATGTTAAAAGTTCGAATTTTTATAAGTCCGGAAAATTTGGCAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

mRNA sequence

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

Coding sequence (CDS)

ATGCACAGTCACTCAGCCGCCACCGCAGATGCCTCCCTGAGCCACCTCCAACCGCCGCCACCTTTCCCGTCGTTCTCAAATTTGATACATTCCCACAACCCTTTCCCAATGGTAGAGGCATTGGAGGTTAGTTATAGTGGGAGTAGTAGTGGAGGTTGTAGTTATAGTAGCTACGGGTCTCCAACATCGCACCCTGGGCTAAGCCATGGTCCAACCTCTCGCCGACCACTCACAAGGGCTTACAGCTCCGGTCATAATGAGAGAGGAGGCGAAGAGAGGGCATGGTCCAGTGAAAGCAGTTTGATAATAGAAGGAATGAGAAGAGCTTCCCCATATACTCCCCAAGAGAAGAGACACAGAATTGAGAGATACAAAACCAAGAGAAACCAAAGGAATTTTAATAAGAAGATTAAGTATGAATGTAGGAAGACACTGGCAGATAGTAGAAAGCGCATACGAGGGAGATTTGCGAGAAATGAAGAAGCTGAGAATAGTAACTCGACTAGCTCGCCGGTCGAGACATGGAGCTGCTACGACAATGCCATGGCCGAGGACGATGCCTCTTGGACAACCTTTCTTGATTCTTACTCTCTTAACTTCGTTCCTTGA

Protein sequence

MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP

Homology

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BLAST of Carg12350-RA vs. NCBI nr
Match: XP_022949263.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata])

HSP 1 Score: 381.7 bits (979), Expect = 1.5e-102
Identity = 196/202 (97.03%), Postives = 198/202 (98.02%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSH+AATADASLSHLQPPPPFPSFSN I+SHNP PMVEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHAAATADASLSHLQPPPPFPSFSNFIYSHNPSPMVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350-RA vs. NCBI nr
Match: XP_022998187.1 (zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima])

HSP 1 Score: 380.9 bits (977), Expect = 2.6e-102
Identity = 195/202 (96.53%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIHSHNPFPMVEALEVSYSGSSSGGCSYSSYGS 60
           MHSHSAATADASLSHLQPPPPFPSFSNLI+SHNPFP+VEALEVSYSGSSSGGC  SSYGS
Sbjct: 1   MHSHSAATADASLSHLQPPPPFPSFSNLIYSHNPFPIVEALEVSYSGSSSGGC--SSYGS 60

Query: 61  PTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120
           PTSHPGLSHGP+SRRPLTRAYSSGHNER GEERAWSSESSLIIEGMRRASPYTPQEKRHR
Sbjct: 61  PTSHPGLSHGPSSRRPLTRAYSSGHNERRGEERAWSSESSLIIEGMRRASPYTPQEKRHR 120

Query: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDN 180
           IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSP+ETWSCYDN
Sbjct: 121 IERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPIETWSCYDN 180

Query: 181 AMAEDDASWTTFLDSYSLNFVP 203
           AMAEDDASWTTFLDSYSLNFVP
Sbjct: 181 AMAEDDASWTTFLDSYSLNFVP 200

[Close]

BLAST of Carg12350-RA vs. NCBI nr
Match: XP_023524572.1 (uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 5.1e-82
Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 0


Query: 37  MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHGPTSRRPLTRAYSSGHNERGGEERAWS 96
           MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSH PTSRRPLTRAYSSGHNER GEER WS
Sbjct: 1   MVEALEVSYSGSSSGGCSYSSYGSPTSHPGLSHAPTSRRPLTRAYSSGHNERRGEERTWS 60

Query: 97  SESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRF 156
           SESS+IIEGMRRASPYTPQEKRHRIERYK KRNQRNFNKKIKYECRKTLADSRKRIRGRF
Sbjct: 61  SESSMIIEGMRRASPYTPQEKRHRIERYKIKRNQRNFNKKIKYECRKTLADSRKRIRGRF 120

Query: 157 ARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLNFVP 203
           ARNEEAENSNSTSSPVETWSCYDNAM EDDASWTTFLDSYSLNFVP
Sbjct: 121 ARNEEAENSNSTSSPVETWSCYDNAMPEDDASWTTFLDSYSLNFVP 166

[Close]

BLAST of Carg12350-RA vs. NCBI nr
Match: XP_022970463.1 (zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 135/234 (57.69%), Postives = 155/234 (66.24%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF------PMVE-----ALEV 60
           MH+ S+AT +ASL HL        PP   SF + I SH+        PM+E       E+
Sbjct: 1   MHAFSSATLEASLCHLPTPDLAVSPPLLASFPHFISSHSSLLASELAPMLEPSGLLPSEL 60

Query: 61  SYSGSSSGGCSYSSYGSPTSHP--GLSHGP--------TSRRPLTRAYSSGHNERGGEER 120
           SYS  SSG C  SSY SPTS P   +SHGP             + RAY S ++ +G  E 
Sbjct: 61  SYS-CSSGPC--SSYESPTSKPQRSMSHGPGVQISMLFDLESSVRRAYRS-NDLQGRTEM 120

Query: 121 AWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRI 180
             S+ESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADSR+RI
Sbjct: 121 TNSNESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADSRRRI 180

Query: 181 RGRFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSLNFVP 203
           RGRFARNEE ENSNSTSSP ETWSCYDNA  E    DD SW TFLDSYS+NF+P
Sbjct: 181 RGRFARNEEVENSNSTSSPTETWSCYDNATTEEDGQDDGSWITFLDSYSVNFIP 230

[Close]

BLAST of Carg12350-RA vs. NCBI nr
Match: XP_022964840.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45
Identity = 134/234 (57.26%), Postives = 154/234 (65.81%), Query Frame = 0


Query: 1   MHSHSAATADASLSHL------QPPPPFPSFSNLIHSHNP----------FPMVEA---- 60
           MH+ S+AT +ASL HL        PP   SF + I SH+            PM+E+    
Sbjct: 1   MHAFSSATLEASLCHLPAPDLAMSPPLLASFPHFISSHSSSFSSLLASDLVPMLESPGLL 60

Query: 61  -LEVSYSGSSSGGCSYSSYGSPTSHP--GLSHGPTSR--------RPLTRAYSSGHNERG 120
             E+SYS  SSG C  SSYGSPTS P   + H P  +          + RAYS  ++ +G
Sbjct: 61  PSELSYS-CSSGPC--SSYGSPTSKPQRSMRHRPNVQISTLFDLESSVRRAYSF-NDLQG 120

Query: 121 GEERAWSSESSLIIEGM-RRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADS 180
             E A SSESSLIIEGM  +A  Y+P+EKR RIE+YKTKRNQRNFNKKIKYECRKTLADS
Sbjct: 121 RTEMASSSESSLIIEGMSTKACRYSPEEKRQRIEKYKTKRNQRNFNKKIKYECRKTLADS 180

Query: 181 RKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE----DDASWTTFLDSYSL 199
           R+RIRGRFARNEE ENSNSTSSP ETWSCYDNA AE    DD SW TFLDSYS+
Sbjct: 181 RRRIRGRFARNEEVENSNSTSSPTETWSCYDNATAEEVGQDDGSWITFLDSYSV 230

[Close]

BLAST of Carg12350-RA vs. TAIR10
Match: AT5G59990.1 (CCT motif family protein)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-20
Identity = 72/165 (43.64%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 46  SGSSSGGCSYSSYGSPTSHPGLSHGPTSRR--------PLTRAYSSG---HNERGGEERA 105
           S   SGG S     S +SH G S   T+          P+ RA S+G    + R      
Sbjct: 82  SSMGSGGESLVMQRSVSSHNGFSGNYTAAHDFVNDDDGPVRRALSAGDLPRSSRRESSTV 141

Query: 106 WSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRG 165
           W SES+ IIEGM +A  Y+P+EK+ +I     KRN RNFNK+IKYECRKTLADSR RIRG
Sbjct: 142 W-SESNAIIEGMSKAYKYSPEEKKEKIXXXXXKRNLRNFNKRIKYECRKTLADSRPRIRG 201

Query: 166 RFARNEEAENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLN 200
           RFARN+E                   A+  D  +W +FLDS+S N
Sbjct: 202 RFARNDEISQQEQVD--------VMEAVVGDVDTWASFLDSFSAN 237

[Close]

BLAST of Carg12350-RA vs. TAIR10
Match: AT2G33350.1 (CCT motif family protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 MRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENS 165
           + +    +P++++ +I RY  KRN+RNFNKKIKY CRKTLADSR R+RGRFA+N+E    
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAKNDEFGEP 359

Query: 166 NSTSSPVETWSCYDNAMAEDD 187
           N      + +S + +   EDD
Sbjct: 360 NR-----QAFSSHHDDEDEDD 375

[Close]

BLAST of Carg12350-RA vs. TAIR10
Match: AT3G12890.1 (activator of spomin::LUC2)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 90  GEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSR 149
           GE+   +SE  +  E   +   Y+ +E++ RI RY  K+NQRNFNK IKY CRKTLAD R
Sbjct: 112 GEQSWGNSEGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRR 171

Query: 150 KRIRGRFARNEE 162
            R+RGRFARN +
Sbjct: 172 VRVRGRFARNND 183

[Close]

BLAST of Carg12350-RA vs. TAIR10
Match: AT1G63820.1 (CCT motif family protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 77  LTRAYSSGHNERGGE----ERAWSS----ESSLII-----EGMRRASPYTPQEKRHRIER 136
           + R YS+G  +  G     +R++SS    ESS        E   R   Y+ +E++ +I +
Sbjct: 139 MRRVYSTGDLQNLGRDFTGQRSYSSPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISK 198

Query: 137 YKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEA-ENSNSTSS 171
           Y+ KR QRNF K IKY CRKTLAD+R R+RGRFARN+E  EN    SS
Sbjct: 199 YRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFARNDEVFENPKIASS 246

[Close]

BLAST of Carg12350-RA vs. TAIR10
Match: AT1G04500.1 (CCT motif family protein)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-11
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 115 QEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSN 167
           ++++ +I RY  KRN+RNF+KKIKY CRKTLADSR R+RGRFA+N+E    N
Sbjct: 286 EQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 337

[Close]

BLAST of Carg12350-RA vs. Swiss-Prot
Match: sp|Q940T9|COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 105 GMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAEN 164
           G +RA P T  E+  R+ RY+ KR  R F K I+Y  RK  A+ R RI+GRFA+  +   
Sbjct: 283 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNE 342

Query: 165 SN 167
           SN
Sbjct: 343 SN 344

[Close]

BLAST of Carg12350-RA vs. TrEMBL
Match: tr|A0A0A0LUR6|A0A0A0LUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.1e-44
Identity = 135/249 (54.22%), Postives = 150/249 (60.24%), Query Frame = 0


Query: 1   MHSHSAATADASLSHLQ------PPPPFPSFSNLIHSHNPF-----------PMVEALE- 60
           MHS S A  D S+ HL        PP FPSF N   SH+             P++E+ E 
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSPPLFPSFPNFSSSHSSSFLLAYSQLALNPVLESPEL 60

Query: 61  -----VSYSGSSSGGCSYSSYGSPT-SHPGL---------------SHGP---------T 120
                +SYSG SSG C  SSYGSPT S P L                HGP         T
Sbjct: 61  LPSEVISYSG-SSGPC--SSYGSPTSSQPSLIQRSMSSQSLQKDRVRHGPGARISSLIDT 120

Query: 121 SRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRN 180
               + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EKR RIERYKTKRNQRN
Sbjct: 121 DMPAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKRERIERYKTKRNQRN 180

Query: 181 FNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-----DDA 197
           FNKKIKYECRKTLADSR+RIRGRFARNEE EN NSTSSP+E WSCY+N M E     DD 
Sbjct: 181 FNKKIKYECRKTLADSRRRIRGRFARNEEIENGNSTSSPLEAWSCYENPMVEEDTVQDDG 240

[Close]

BLAST of Carg12350-RA vs. TrEMBL
Match: tr|A0A1S3C703|A0A1S3C703_CUCME (zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 133/252 (52.78%), Postives = 151/252 (59.92%), Query Frame = 0


Query: 1   MHSHSAATADASLSHL--------QPPPPFPSFSNLIHSHNPF-----------PMVEAL 60
           MHS S A  D S+ HL          PP FPSF N   SH+             P++E+ 
Sbjct: 1   MHSFSPA-VDTSIFHLHSPDLIVSSSPPLFPSFPNFSSSHSSSFLLAYSQLALDPVLESP 60

Query: 61  E------VSYSGSSSGGCSYSSYGSPT-SHPGL---------------SHGP-------- 120
           +      +SYSG SSG C  SSYGSPT S P L                HGP        
Sbjct: 61  DLLPLEVISYSG-SSGPC--SSYGSPTSSQPALIQRSMSSQSLQKDRVRHGPGARISSLI 120

Query: 121 -TSRRPLTRAYSSGHNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQ 180
            T    + R YSSG + +G  ER  SSESSLIIEGM +A  Y+P+EK+ RIERYK+KRNQ
Sbjct: 121 DTDMPAVRRVYSSG-DLQGRTERGCSSESSLIIEGMTKACRYSPEEKKERIERYKSKRNQ 180

Query: 181 RNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM------AE 197
           RNFNKKIKYECRKTLADSR+RIRGRFARNEE ENSNSTSSP+E WSCYDN M       +
Sbjct: 181 RNFNKKIKYECRKTLADSRRRIRGRFARNEEIENSNSTSSPLEAWSCYDNPMVKELDTTQ 240

[Close]

BLAST of Carg12350-RA vs. TrEMBL
Match: tr|B9N6M0|B9N6M0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G233600v3 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.3e-24
Identity = 84/178 (47.19%), Postives = 104/178 (58.43%), Query Frame = 0


Query: 46  SGSSSGGCSYSSYGSPTSHPGLSHGPTSRR-------------------PLTRAYSSGHN 105
           + S++ GC  SSYGSP+S   +S     +                    P+ R +S+G  
Sbjct: 57  TSSTASGC--SSYGSPSSLRSISSHSFQKNGYHCHFASHPHDFLDMDTSPVRRVFSTGDL 116

Query: 106 ERGGE-ERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKTL 165
           + G   E    SESSLIIE M +A  Y+P+EK+ RIERY++KRNQRNFNKKIKYECRK L
Sbjct: 117 QHGHRAESPLLSESSLIIESMSKACKYSPEEKKERIERYRSKRNQRNFNKKIKYECRKIL 176

Query: 166 ADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAM-AEDDASWTTFLDSYSLNFVP 203
           ADSR RIRGRFARN+E E      +P   WS        EDD +W  FLDS+S N VP
Sbjct: 177 ADSRPRIRGRFARNDEIE-----KNPQLQWSNVSGEEDEEDDDNWIDFLDSFSENSVP 227

[Close]

BLAST of Carg12350-RA vs. TrEMBL
Match: tr|A0A2P5A841|A0A2P5A841_PARAD (CCT domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_358970 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 72/141 (51.06%), Postives = 90/141 (63.83%), Query Frame = 0


Query: 76  PLTRAYSSGHNER---------GGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKT 135
           P+ R YS+G  ++            E   SSES+ IIEGM +A  Y+P+EK+ RIERY++
Sbjct: 135 PVRRVYSTGDLQQRINMVQPSYRSSESPLSSESNAIIEGMSKACRYSPEEKKERIERYRS 194

Query: 136 KRNQRNFNKKIKYECRKTLADSRKRIRGRFARNEEAENSNSTSSPVETWSCYDNAMAE-- 195
           KRNQRNFNKKIKY CRKTLADSR RIRGRFARNEE    NS    +  WS + N + E  
Sbjct: 195 KRNQRNFNKKIKYACRKTLADSRPRIRGRFARNEEITEKNS-DDQLAQWS-HINGIGEEE 254

Query: 196 ---DDASWTTFLDSYSLNFVP 203
              DD +W   LD++S N +P
Sbjct: 255 YEDDDENWVNLLDAFSSNLIP 273

[Close]

BLAST of Carg12350-RA vs. TrEMBL
Match: tr|A0A1S4AZ00|A0A1S4AZ00_TOBAC (two-component response regulator-like APRR5 OS=Nicotiana tabacum OX=4097 GN=LOC107802705 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 85  HNERGGEERAWSSESSLIIEGMRRASPYTPQEKRHRIERYKTKRNQRNFNKKIKYECRKT 144
           HN+R   E + SSES+ IIEGM +A  Y+P+EK+ RIERY++KRNQRNFNKKIKYECRKT
Sbjct: 134 HNQR--SESSLSSESNSIIEGMNKACRYSPEEKKERIERYRSKRNQRNFNKKIKYECRKT 193

Query: 145 LADSRKRIRGRFARNEE-----AENSNSTSSPVETWSCYDNAMAEDDASWTTFLDSYSLN 203
           LADSR RIRGRFARN+E      +N   T S +E          E+D +W  FLD++S N
Sbjct: 194 LADSRPRIRGRFARNDEIIERTPQNEYWTQSRLEEGE-------EEDENWIGFLDAFSAN 247

The following BLAST results are available for this feature:

BLAST of Carg12350-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949263.1	1.5e-102	97.03	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita moschata]	[more]
XP_022998187.1	2.6e-102	96.53	zinc finger protein CONSTANS-LIKE 4-like [Cucurbita maxima]	[more]
XP_023524572.1	5.1e-82	96.39	uncharacterized protein LOC111788469 [Cucurbita pepo subsp. pepo]	[more]
XP_022970463.1	1.4e-47	57.69	zinc finger protein CONSTANS-LIKE 5-like isoform X1 [Cucurbita maxima]	[more]
XP_022964840.1	1.0e-45	57.26	zinc finger protein CONSTANS-LIKE 5-like [Cucurbita moschata]	[more]

BLAST of Carg12350-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59990.1	3.0e-20	43.64	CCT motif family protein	[more]
AT2G33350.1	2.3e-12	46.91	CCT motif family protein	[more]
AT3G12890.1	3.0e-12	52.78	activator of spomin::LUC2	[more]
AT1G63820.1	2.6e-11	44.44	CCT motif family protein	[more]
AT1G04500.1	7.5e-11	61.54	CCT motif family protein	[more]

BLAST of Carg12350-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q940T9\|COL4_ARATH	2.6e-05	45.16	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]

BLAST of Carg12350-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUR6\|A0A0A0LUR6_CUCSA	2.1e-44	54.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497300 PE=4 SV=1	[more]
tr\|A0A1S3C703\|A0A1S3C703_CUCME	1.8e-43	52.78	zinc finger protein CONSTANS-LIKE 3-like OS=Cucumis melo OX=3656 GN=LOC103497191...	[more]
tr\|B9N6M0\|B9N6M0_POPTR	9.3e-24	47.19	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G233600v3 PE=...	[more]
tr\|A0A2P5A841\|A0A2P5A841_PARAD	3.6e-23	51.06	CCT domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_358...	[more]
tr\|A0A1S4AZ00\|A0A1S4AZ00_TOBAC	3.6e-23	56.10	two-component response regulator-like APRR5 OS=Nicotiana tabacum OX=4097 GN=LOC1...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR010402	CCT_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12350	Carg12350	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12350-RA.exon.1	Carg12350-RA.exon.1	exon
Carg12350-RA.exon.2	Carg12350-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12350-RA.CDS.1	Carg12350-RA.CDS.1	CDS
Carg12350-RA.CDS.2	Carg12350-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12350-RA	Carg12350-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 118..159 e-value: 4.5E-17 score: 61.8
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 117..159 score: 14.743
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..80
None	No IPR available	PANTHER	PTHR31319:SF22	CCT MOTIF FAMILY PROTEIN	coord: 41..168
None	No IPR available	PANTHER	PTHR31319	FAMILY NOT NAMED	coord: 41..168