Carg12345-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12345-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_074 : 426556 .. 426954 (+)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

mRNA sequence

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

Coding sequence (CDS)

ATGGCTCAAACGCTTACTTTCCTGTTCTATCTCTCTTCATTTCTTTCCATCGTCCGAGCTGAAGGCAGAGCACCTCATGGCCTGGTATATGAGAACCCGGTGGCGTTCTCTCCAATGGCGTATGATTTCTTCCATCCAAGAACCCGGAGTCCCAATGCCGAAGACCCATGTGGTGCATCCAAATGCTCCCCTTTGCCCCTTGCAGCTCAACTGCAATCTAATCCTGCACAAGAAGGCAAATACTCCACAACAACTCAGAAAGGTGAGGGGGTTGGTGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCTGTGTTTTTGGCGATGGGGGTGTACTATGTACTACGTACCCGCCTAGCCAACGCAAACCGAGCCATGTCTGGAAAACCTGGGGCTTGA

Protein sequence

MAQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTRLANANRAMSGKPGA

Homology

[Close]

BLAST of Carg12345-RA vs. NCBI nr
Match: XP_023524574.1 (uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 252.7 bits (644), Expect = 7.0e-64
Identity = 129/134 (96.27%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MAQTLTFLFYLSS  FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MAQTLTFLFYLSSFTFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQS PAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSKPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 133
           LANANRAMS KPGA
Sbjct: 121 LANANRAMSAKPGA 134

[Close]

BLAST of Carg12345-RA vs. NCBI nr
Match: XP_022949574.1 (uncharacterized protein LOC111452884 [Cucurbita moschata])

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-63
Identity = 128/134 (95.52%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M QTLTFLFYLS  SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MVQTLTFLFYLSSFSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 133
           LAN NRAMS KPGA
Sbjct: 121 LANTNRAMSAKPGA 134

[Close]

BLAST of Carg12345-RA vs. NCBI nr
Match: XP_022998560.1 (uncharacterized protein LOC111493157 [Cucurbita maxima])

HSP 1 Score: 248.1 bits (632), Expect = 1.7e-62
Identity = 126/134 (94.03%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           MA+TLTFLFYLSS  FLS V AEGRAPHGL YENPVAFSPMAYDFFHPRTRSPNAEDPCG
Sbjct: 1   MAKTLTFLFYLSSFTFLSAVHAEGRAPHGLAYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120
           ASKCSPLPLAAQLQSNPAQE KYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR
Sbjct: 61  ASKCSPLPLAAQLQSNPAQESKYSTTTQKGEGVGGILGIVFGITFAVFLAMGVYYVLRTR 120

Query: 121 LANANRAMSGKPGA 133
           LANANRAMS KPGA
Sbjct: 121 LANANRAMSAKPGA 134

[Close]

BLAST of Carg12345-RA vs. NCBI nr
Match: XP_022158643.1 (uncharacterized protein LOC111025099 [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 105/137 (76.64%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M Q LTFLF LSS  FLS+ RAEGRAPHGLVYE+P+AFSPMAYDFFHP  ++ NA+DPC 
Sbjct: 1   MTQMLTFLFCLSSSTFLSVARAEGRAPHGLVYESPLAFSPMAYDFFHPSAQNSNAKDPCA 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
           ASKCSPLPLAAQ+QS PAQ+ KYST  QKGE   G GG+LGIV GI FAVFLAMGVYYVL
Sbjct: 61  ASKCSPLPLAAQVQSTPAQQSKYSTAVQKGEHGLGAGGVLGIVLGIMFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMSGKPGA 133
           RTR ANANRAMS +PGA
Sbjct: 121 RTRQANANRAMSTQPGA 137

[Close]

BLAST of Carg12345-RA vs. NCBI nr
Match: XP_008457527.1 (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF LSS  FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMS 128
           RTR ANANRAMS
Sbjct: 121 RTRQANANRAMS 132

[Close]

BLAST of Carg12345-RA vs. TAIR10
Match: AT2G28410.1 (unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 8.3e-19
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSFL--SIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAE-DPC 60
           M      +F+ SS +  +   A+ RAPHGL YE PVAFSP A+DFFH +  +P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQLQ--SNPAQEG---KYSTTTQKGEGVGGILGIVFGITFAVFL 108
             S CSPLP+AA++Q  S  AQE      ST T+ G    G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

[Close]

BLAST of Carg12345-RA vs. TAIR10
Match: AT5G60650.1 (unknown protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-14
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0


Query: 1   MAQTLTFLFYLSSFLSIVRAEGRAP-HGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGA 60
           +  +L F F   S L  V   G  P HG  Y NP AFSP AYDFFHP++   +  +P   
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGSRPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNP--- 63

Query: 61  SKCSPLPLA--------------AQLQSNPAQEGKYSTTTQKGEGVGGILGIVFGITFAV 120
            K SP PL+              +Q     + E   S + ++ EG G  +G+V G++F  
Sbjct: 64  PKSSPSPLSLXXXXXKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIA 123

Query: 121 FLAMGVYYVLRTRLANANRAM 127
           FL++G+Y+V++ + AN  R +
Sbjct: 124 FLSLGIYFVIKKQRANIIRTI 141

[Close]

BLAST of Carg12345-RA vs. TrEMBL
Match: tr|A0A1S3C6E2|A0A1S3C6E2_CUCME (uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.6e-48
Identity = 103/132 (78.03%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MAQTLTFLFYLSS--FLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M + LTFLF LSS  FLS+ RA+GRAPHGLVYE+PVAFSPMAYDFFHP T++PN +DPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQLQSNPAQEGKYSTTTQKGE---GVGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQ+QS PA+E KYSTT Q  +   G GGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRLANANRAMS 128
           RTR ANANRAMS
Sbjct: 121 RTRQANANRAMS 132

[Close]

BLAST of Carg12345-RA vs. TrEMBL
Match: tr|A0A1U8PJI9|A0A1U8PJI9_GOSHI (uncharacterized protein LOC107959030 OS=Gossypium hirsutum OX=3635 GN=LOC107959030 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.4e-33
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M+  L+FL ++S  + LSIV  EGRAPHG+ YENPVAFSP AY+FFHP+ + P+ ++PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIVNGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  ASKCSPLPLAAQL-QSNPAQEGKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVL 120
           AS CSPLP+AAQ+     A E K ST  + G   G GGILG+VFG+ FAV LAMGVYYVL
Sbjct: 61  ASSCSPLPIAAQMDDGTTALESKVSTQKESGHQLGAGGILGLVFGLAFAVLLAMGVYYVL 120

Query: 121 RTRLANANRA 126
             R ANAN+A
Sbjct: 121 NIRRANANKA 130

[Close]

BLAST of Carg12345-RA vs. TrEMBL
Match: tr|A0A2P5XUF0|A0A2P5XUF0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13689 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.4e-33
Identity = 77/130 (59.23%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M+  L+FL ++S  + LSIV  EGRAPHG+ YENPVAFSP AY+FFHP+ + P+ + PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIVNGEGRAPHGIAYENPVAFSPSAYEFFHPKAQGPDTKHPCA 60

Query: 61  ASKCSPLPLAAQL-QSNPAQEGKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVL 120
           AS CSPLP+AAQ+     A E K ST  + G   G GGILG+VFG+ FAV LAMGVYYVL
Sbjct: 61  ASSCSPLPIAAQMDDGTTALESKVSTQKESGHQLGAGGILGLVFGLAFAVLLAMGVYYVL 120

Query: 121 RTRLANANRA 126
             R ANAN+A
Sbjct: 121 NIRRANANKA 130

[Close]

BLAST of Carg12345-RA vs. TrEMBL
Match: tr|A0A1U8JED3|A0A1U8JED3_GOSHI (uncharacterized protein LOC107906223 OS=Gossypium hirsutum OX=3635 GN=LOC107906223 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 77/137 (56.20%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 1   MAQTLTFLFYLS--SFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCG 60
           M+  L+FL ++S  + LSIV  EGRAPHG+ YENPVAFSP AY+FFHP+ + P+ ++PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIVNGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  ASKCSPLPLAAQL-QSNPAQEGKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVL 120
           AS CSPLP+AAQ+     A E K ST  + G   G GGI+G+VFG+ FAV LAMGVYYVL
Sbjct: 61  ASSCSPLPIAAQMDDGTTALESKVSTQKESGHQLGAGGIVGLVFGLAFAVLLAMGVYYVL 120

Query: 121 RTRLANANRAMSGKPGA 133
             R +NAN+A   +P A
Sbjct: 121 NIRRSNANKANYVQPNA 137

[Close]

BLAST of Carg12345-RA vs. TrEMBL
Match: tr|A0A061GY53|A0A061GY53_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042052 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.1e-32
Identity = 76/134 (56.72%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 2   AQTLTFLFYLSSFLSIVRAEGRAPHGLVYENPVAFSPMAYDFFHPRTRSPNAEDPCGASK 61
           A  L  L    + +S+ RA+ RAPHG+ YENP+AFSP AY+FFHP+TR P+ ++PC AS 
Sbjct: 42  ASCLLLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASN 101

Query: 62  CSPLPLAAQLQSNPA-QEGKYSTTTQKGE--GVGGILGIVFGITFAVFLAMGVYYVLRTR 121
           CSPLP+AAQ+ +  A +E K ST    G   G GGI G+VFG+ FAV LAMG YYVL TR
Sbjct: 102 CSPLPMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTR 161

Query: 122 LANANRAMSGKPGA 133
            ANANRA S +P A
Sbjct: 162 RANANRANSVQPDA 175

The following BLAST results are available for this feature:

BLAST of Carg12345-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524574.1	7.0e-64	96.27	uncharacterized protein LOC111788471 [Cucurbita pepo subsp. pepo]	[more]
XP_022949574.1	1.2e-63	95.52	uncharacterized protein LOC111452884 [Cucurbita moschata]	[more]
XP_022998560.1	1.7e-62	94.03	uncharacterized protein LOC111493157 [Cucurbita maxima]	[more]
XP_022158643.1	3.7e-49	76.64	uncharacterized protein LOC111025099 [Momordica charantia]	[more]
XP_008457527.1	5.4e-48	78.03	PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo]	[more]

BLAST of Carg12345-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28410.1	8.3e-19	45.22	unknown protein	[more]
AT5G60650.1	2.8e-14	34.04	unknown protein	[more]

BLAST of Carg12345-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12345-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6E2\|A0A1S3C6E2_CUCME	3.6e-48	78.03	uncharacterized protein LOC103497198 OS=Cucumis melo OX=3656 GN=LOC103497198 PE=...	[more]
tr\|A0A1U8PJI9\|A0A1U8PJI9_GOSHI	9.4e-33	59.23	uncharacterized protein LOC107959030 OS=Gossypium hirsutum OX=3635 GN=LOC1079590...	[more]
tr\|A0A2P5XUF0\|A0A2P5XUF0_GOSBA	9.4e-33	59.23	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13689 PE=4 SV...	[more]
tr\|A0A1U8JED3\|A0A1U8JED3_GOSHI	1.2e-32	56.20	uncharacterized protein LOC107906223 OS=Gossypium hirsutum OX=3635 GN=LOC1079062...	[more]
tr\|A0A061GY53\|A0A061GY53_THECC	2.1e-32	56.72	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_042052 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12345	Carg12345	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12345-RA.exon.1	Carg12345-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12345-RA.CDS.1	Carg12345-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12345-RA	Carg12345-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35718	FAMILY NOT NAMED	coord: 2..126