Carg12324-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12324-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein trigalactosyldiacylglycerol 2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_074 : 321126 .. 325371 (-)
Sequence length	2395

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCGGACTTTCCTTCCCAATCTTCGGTAATGGTGGCGTTCAAACAGTTCTTTTCTACGCCATTTTCACCTTTTTTTGCGTTTCCATTACTGGTTGAAATTGTTGACCCAATATCATCAATCGAATAGCTACAATCTCGAGTTATAGGTATGTATTTTGAACTTGATTTCACTTTGGATTTGCTGTAATTTTCTGGATTTCGTTGTTTGTACGAATCCTCATTTCGTCTTTTTACATCTGGATTTGATGATTTGATTGAGGATGCCATTGATGTTTCTTATGGATTTCTGTCTTCTCTTGCGTACAGTGATCATAATAAGTAGAGAAAGCGTATTACTATTTTTTATCATCTTTGGAATTTGGAAACTAAGTAATATGATTGTTAGATGCTGCGGGAGAGTGAATTGAATGTCCTATTTCTTTCACAAAAACAAGAGGAACACTAAATTCTTCTAAATATCTATGTTTTATTTTGAACAACAATCGTACTTGAAGGAAATTCTAAAACTAAGAGGTGAATATCATTTTGGGAGATGACTTTGGTAAGGAAAACTTTATGTAGTTTTGAATTGGCGAAAAGTTTACGGGTGTCATTCTTGATCATTGAACTGAACATGAACTTGTATCTATTTCCAGTCATTTTGATGATGAAAACGAATAGGTATTTCTTGAAGTTGTTGTATTATCTGCTGATAACTTCAAAATTTGTTACTTCCACAGGCTGTTTTCTAAATTTTGTTTCACTGTTGCTGTTGTGCAAAAATGGTGGTGGATACTCATGCGCAGGTTGCAAAATTTTCTGTGGCCTTACCCTCGTCCTTGGTTACCCTTCCACATAGATCTTCAAATAGGTTGTCTTATCATCTCCCATTGGGTCTAAAAGCAAAAGTAAAAAAGATAAAGTCCTCATCTGCTACTGATGCAGGACATAGTGTGCCTCCCTCATCTTCAGAAAGAAGGAATCCACTTGCCATTTTTCTTGATGTTCCTCGTACTGTATGGAGGCAAACATTGCGTCCATTGAGTAATTTTGGGTTCGGTCAAAGGAGCATATGGGAAGGTGGGGTTGGGTTGTTTCTAGTGTCAGGTGCTATACTTCTCACACTCAGTTTGGCTTGGTTGAGAGGCTTTCAACTGCGGTCTAAATTTAGAAAATACTTGGCTGTCTTTGAGTTTGCTCAGGCCTGTGGTATTTCTACTGGAACTCCTGTAAGAATTAGAGGGGTTACTGTTGGCAATGTCATTCGTATTAACCCTTCCTTGAGATGTATTGAAACTGTTGTTGAGGTATGCAAATTCATATCCTTTTTATCATTCTATCCTTGATTATCTAACCAAAGACTAAAAATACTTTTTGTGTCTGAAATTACTTTTTATTCTTCAAAATCATCTCAAACTCATGTAAGTTTATCGTTAGTTTGAGAACCAAAAGTTAAACTATATAGGTGTGGGATCTCACATCGGTTGGAGAGAGGAACGAAGTATTCCTTATAAGGGTATGGAAACCTCTTCCTAGCAAACACGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGAGTAAGCTCAATGAGGATAATATCTGCTGGCGGCTAGCATTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACATCGGGCGGTGTGCTAGCGAGGACGTCGGGTCCCCAAGAGGGATGGATTGTGAGATCCCACATCGGTTGGAGAGAGGAATGAAGTATTCCATATGAGGGTATGGAAACCTCTCCCTGGCAGACATGTTTTAAAAACCTTGAGAGAAAACTCGAAAGGAAAAACCCAAAAGGGGACAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAATAGGCTAGTTAACAAATAGGCTTACTCTTTGACTTACAAAGATTAAAAAAAGAAAAAGAAAAAGAAAAGGAGAAGACATTGACTAAGATGCGTAAAAGGAAAGAAAATAAAAAAGAGAGACGTTTTAGTTTCCTTAATCAAAGCTTTTAACAAAGAGTTTGTACCATATGCCATTTAGTTCATATTATCTTCCTATAGAGTTCATCATAGTTATTTTCCATTGGCATGAATTCGTTTTCTTACCATTTTTTTTTCTATCACAAAATGAAATATACCACCCATTTTGCAGCTTGAAGATGATAAGATAATTGTACCACGTAATTCATTGGTTGAAGTAAACCAGTCTGGTCTTCTTATGGAGACAGTGATTGACATTACTCCTCGCAATCCTATTCCAGTGCCTTCAGCGGGACCACTTGACTCTGAATGTATCAAAGAAGGTTTAATATTATGCGATAAGCAGAAAATGAAGGGGCATCAAGGGGTAAGTTTGGATGAATTAGTTGGAATATTCACTCGGCTTGGGCGCGAAGCGGAGGAAATAGGGCTTTCCAATACATTTGCATTAGCTCAACGAGTTGCTTTGGTTATTGAAGAAGCAAAGCCTTTGCTTTTAAAGGTCCGACTCCTTACAATTTCATGCTCTAAACTTTATTTTCTAGCTTGGTTCCTAGGCAGTCATTCAAATTATGAATGTTCATATCTTGTAAATATTATAAGAAAATATTTTGTTGGCAACTCTGATGGGATGTTCACTGATTTCATGAAGAAGATGGAAGGCTTGTAAAAAAACAATAAATACTATGTATTCGTATGCCAGCACTTCCATGGAATCTGGTTACTTATTAAGGCTTCTAGATTTACCTAGTAGGTAGGATCTGGACTTTTGCTAAAAAAAACTTTTAAAGAGCAAATATGATTGGAACATTGATAGCTCAAACATAGGAGTTGCATTGCGGCTAGAAACTGGGAGTTTTCTTGGGTATTCCGGTATGAGCCTTCGAACGGAATCAGGAATTTATAGCTTTAATCCTTGAAAGTTGTAATTATTTGTGTTAAAATGTATTAGGTTCTTGTTTGATTGTCTATTTTGATGAGTGAGATATATAGTTCCACGTATCTAACTATCTTCCTATGAAAAATGTTTGTTTTGATGTAGTGATGTCTCAGATTCAAGCCATGGCTGAAGATGTTCAACCTTTGCTCGCTGAGCTTCGTGACAGTGGTCTTCTAAAGGAGGTTGAAAATTTAACTAAAAGTTTGTCACATGCCACAGAAGATTTAAGGTAAACTATTCCTGAAGTCTGAAATTGGAATTTTAATGTAGATAAGCTCTGATTTCTGAATTGCCACAAACTTTATAATGAAGCTTCCCCGTTGAGGAAATGAAAAGGGTCTATAATTTTCAATCCTTTGACAACTTTCACCAGAAATTAGTCGCTCTTTTCTTGATTCTTTTATGCATTTCTTCAAGAGAACAGCCTAAATAACATTTGTACAACAGATTTTGGCCTTTTCCTTGCACAAAAATCAGCTCAAACCCAAAACATACATGATGATTTTGAAAAAGAAAAAGAAGAATCAATCTTTGAATTCCTTTTACATGATGTATGCTTATTGAGACTTTTTCGATCGTTTACAGAAGCGTGCATGCGTCCATTATGACTCCCGAAAACACAGCACTGCTTCAGAAATCCATTTATACGCTAATTCTTACTCTGAAGAACATAGAGGTAAGATCCTAACTGGTCGAGTTCTTTCCGGTTTGCCCCAAGCAGTTACTTCTCATAATTACTTTCTTTACCGTTCTAACTCCTTGTTCCTCACTATTGCAGAGTTTGAGCTCAGAACTTCTTGGGTTCACTGGCGATGAGGCTACAAAACGGAATTTAAAAGTGCTGATCAAGTCTCTCAGCAGGCTGCTATGAAACAAAGATATGAACTTGGTATTAGACAACATTGTAGCATCTCAACCTTTTCATATTGCGAGCACAAAGCCGAAGTGGCTCGACGTAGTTTCATAACTGTTATGGTTTCGGCTTCCGCAGGGTGGGGAGGGAGGGAGTCAGGCTCAGGCATTGGCAAAATTTTTGAGATATTTGTGTATGTTCTTAGGTAGTAGCCCTGCTTTAACAGAAGGAAACTGTTGGTTCTTATAACACATATTGGTCCATTTCTTTCAAGGCTTCTTTCTTGTAGGCTGTGGCTTTGGCTGATTTCATAGACATTTGAATGGGTAGGGGCATACTTGCAAGTTGATTGGTCCCAAGGGTACTAGAGAAAAATGGGAGGCATAAAGCAAATGACCCTTCGACGTAGGGATGTTCGTGAGTTGGATTAGGTCATATTGGAACCCGAGTCTACTAATTAGATTGAATTTATAACCATAGTCTTTTAAATCAATA

mRNA sequence

TCTGCGGACTTTCCTTCCCAATCTTCGGTAATGGTGGCGTTCAAACAGTTCTTTTCTACGCCATTTTCACCTTTTTTTGCGTTTCCATTACTGGTTGAAATTGTTGACCCAATATCATCAATCGAATAGCTACAATCTCGAGTTATAGGTATGTATTTTGAACTTGATTTCACTTTGGATTTGCTGTAATTTTCTGGATTTCGTTGTTTGTACGAATCCTCATTTCGTCTTTTTACATCTGGATTTGATGATTTGATTGAGGATGCCATTGATGTTTCTTATGGATTTCTGTCTTCTCTTGCGTACAGTGATCATAATAAGTAGAGAAAGCGTATTACTATTTTTTATCATCTTTGGAATTTGGAAACTAAGTAATATGATTGTTAGATGCTGCGGGAGAGTGAATTGAATGTCCTATTTCTTTCACAAAAACAAGAGGAACACTAAATTCTTCTAAATATCTATGTTTTATTTTGAACAACAATCGTACTTGAAGGAAATTCTAAAACTAAGAGGTGAATATCATTTTGGGAGATGACTTTGGTAAGGAAAACTTTATGTAGTTTTGAATTGGCGAAAAGTTTACGGGTGTCATTCTTGATCATTGAACTGAACATGAACTTGTATCTATTTCCAGTCATTTTGATGATGAAAACGAATAGGTATTTCTTGAAGTTGTTGTATTATCTGCTGATAACTTCAAAATTTGTTACTTCCACAGGCTGTTTTCTAAATTTTGTTTCACTGTTGCTGTTGTGCAAAAATGGTGGTGGATACTCATGCGCAGGTTGCAAAATTTTCTGTGGCCTTACCCTCGTCCTTGGTTACCCTTCCACATAGATCTTCAAATAGGTTGTCTTATCATCTCCCATTGGGTCTAAAAGCAAAAGTAAAAAAGATAAAGTCCTCATCTGCTACTGATGCAGGACATAGTGTGCCTCCCTCATCTTCAGAAAGAAGGAATCCACTTGCCATTTTTCTTGATGTTCCTCGTACTGTATGGAGGCAAACATTGCGTCCATTGAGTAATTTTGGGTTCGGTCAAAGGAGCATATGGGAAGGTGGGGTTGGGTTGTTTCTAGTGTCAGGTGCTATACTTCTCACACTCAGTTTGGCTTGGTTGAGAGGCTTTCAACTGCGGTCTAAATTTAGAAAATACTTGGCTGTCTTTGAGTTTGCTCAGGCCTGTGGTATTTCTACTGGAACTCCTGTAAGAATTAGAGGGGTTACTGTTGGCAATGTCATTCGTATTAACCCTTCCTTGAGATGTATTGAAACTGTTGTTGAGCTTGAAGATGATAAGATAATTGTACCACGTAATTCATTGGTTGAAGTAAACCAGTCTGGTCTTCTTATGGAGACAGTGATTGACATTACTCCTCGCAATCCTATTCCAGTGCCTTCAGCGGGACCACTTGACTCTGAATGTATCAAAGAAGGTTTAATATTATGCGATAAGCAGAAAATGAAGGGGCATCAAGGGGTAAGTTTGGATGAATTAGTTGGAATATTCACTCGGCTTGGGCGCGAAGCGGAGGAAATAGGGCTTTCCAATACATTTGCATTAGCTCAACGAGTTGCTTTGGTTATTGAAGAAGCAAAGCCTTTGCTTTTAAAGATTCAAGCCATGGCTGAAGATGTTCAACCTTTGCTCGCTGAGCTTCGTGACAGTGGTCTTCTAAAGGAGGTTGAAAATTTAACTAAAAGTTTGTCACATGCCACAGAAGATTTAAGAAGCGTGCATGCGTCCATTATGACTCCCGAAAACACAGCACTGCTTCAGAAATCCATTTATACGCTAATTCTTACTCTGAAGAACATAGAGAGTTTGAGCTCAGAACTTCTTGGGTTCACTGGCGATGAGGCTACAAAACGGAATTTAAAAGTGCTGATCAAGTCTCTCAGCAGGCTGCTATGAAACAAAGATATGAACTTGGTATTAGACAACATTGTAGCATCTCAACCTTTTCATATTGCGAGCACAAAGCCGAAGTGGCTCGACGTAGTTTCATAACTGTTATGGTTTCGGCTTCCGCAGGGTGGGGAGGGAGGGAGTCAGGCTCAGGCATTGGCAAAATTTTTGAGATATTTGTGTATGTTCTTAGGTAGTAGCCCTGCTTTAACAGAAGGAAACTGTTGGTTCTTATAACACATATTGGTCCATTTCTTTCAAGGCTTCTTTCTTGTAGGCTGTGGCTTTGGCTGATTTCATAGACATTTGAATGGGTAGGGGCATACTTGCAAGTTGATTGGTCCCAAGGGTACTAGAGAAAAATGGGAGGCATAAAGCAAATGACCCTTCGACGTAGGGATGTTCGTGAGTTGGATTAGGTCATATTGGAACCCGAGTCTACTAATTAGATTGAATTTATAACCATAGTCTTTTAAATCAATA

Coding sequence (CDS)

ATGGTGGTGGATACTCATGCGCAGGTTGCAAAATTTTCTGTGGCCTTACCCTCGTCCTTGGTTACCCTTCCACATAGATCTTCAAATAGGTTGTCTTATCATCTCCCATTGGGTCTAAAAGCAAAAGTAAAAAAGATAAAGTCCTCATCTGCTACTGATGCAGGACATAGTGTGCCTCCCTCATCTTCAGAAAGAAGGAATCCACTTGCCATTTTTCTTGATGTTCCTCGTACTGTATGGAGGCAAACATTGCGTCCATTGAGTAATTTTGGGTTCGGTCAAAGGAGCATATGGGAAGGTGGGGTTGGGTTGTTTCTAGTGTCAGGTGCTATACTTCTCACACTCAGTTTGGCTTGGTTGAGAGGCTTTCAACTGCGGTCTAAATTTAGAAAATACTTGGCTGTCTTTGAGTTTGCTCAGGCCTGTGGTATTTCTACTGGAACTCCTGTAAGAATTAGAGGGGTTACTGTTGGCAATGTCATTCGTATTAACCCTTCCTTGAGATGTATTGAAACTGTTGTTGAGCTTGAAGATGATAAGATAATTGTACCACGTAATTCATTGGTTGAAGTAAACCAGTCTGGTCTTCTTATGGAGACAGTGATTGACATTACTCCTCGCAATCCTATTCCAGTGCCTTCAGCGGGACCACTTGACTCTGAATGTATCAAAGAAGGTTTAATATTATGCGATAAGCAGAAAATGAAGGGGCATCAAGGGGTAAGTTTGGATGAATTAGTTGGAATATTCACTCGGCTTGGGCGCGAAGCGGAGGAAATAGGGCTTTCCAATACATTTGCATTAGCTCAACGAGTTGCTTTGGTTATTGAAGAAGCAAAGCCTTTGCTTTTAAAGATTCAAGCCATGGCTGAAGATGTTCAACCTTTGCTCGCTGAGCTTCGTGACAGTGGTCTTCTAAAGGAGGTTGAAAATTTAACTAAAAGTTTGTCACATGCCACAGAAGATTTAAGAAGCGTGCATGCGTCCATTATGACTCCCGAAAACACAGCACTGCTTCAGAAATCCATTTATACGCTAATTCTTACTCTGAAGAACATAGAGAGTTTGAGCTCAGAACTTCTTGGGTTCACTGGCGATGAGGCTACAAAACGGAATTTAAAAGTGCTGATCAAGTCTCTCAGCAGGCTGCTATGA

Protein sequence

MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPPSSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQGVSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAELRDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSELLGFTGDEATKRNLKVLIKSLSRLL

Homology

[Close]

BLAST of Carg12324-RA vs. NCBI nr
Match: XP_022948293.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita moschata] >XP_022948294.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 729.6 bits (1882), Expect = 5.7e-207
Identity = 384/384 (100.00%), Postives = 384/384 (100.00%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP
Sbjct: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG
Sbjct: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL
Sbjct: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL
Sbjct: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEATKRNLKVLIKSLSRLL
Sbjct: 361 LGFTGDEATKRNLKVLIKSLSRLL 384

[Close]

BLAST of Carg12324-RA vs. NCBI nr
Match: XP_023523118.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023523123.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 716.1 bits (1847), Expect = 6.5e-203
Identity = 378/384 (98.44%), Postives = 380/384 (98.96%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MVVDTH QVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLK KVKKI+SSSA DAGHSVPP
Sbjct: 1   MVVDTHVQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKTKVKKIRSSSA-DAGHSVPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVE+EDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG
Sbjct: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQP LAEL
Sbjct: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPFLAEL 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL
Sbjct: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEATKRNLKVLIKSLSRLL
Sbjct: 361 LGFTGDEATKRNLKVLIKSLSRLL 383

[Close]

BLAST of Carg12324-RA vs. NCBI nr
Match: XP_022998942.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita maxima] >XP_022998943.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 706.1 bits (1821), Expect = 6.7e-200
Identity = 372/384 (96.88%), Postives = 376/384 (97.92%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           M+ DTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLK KVKKI+SSSA DAGHSVPP
Sbjct: 1   MMGDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKTKVKKIRSSSAADAGHSVPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGF QRSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFCQRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVE+EDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           IIVPRNSLVEVNQSGLLME VIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG
Sbjct: 181 IIVPRNSLVEVNQSGLLMEIVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLL KIQAMAEDVQPLLAEL
Sbjct: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLFKIQAMAEDVQPLLAEL 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           R+SGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL
Sbjct: 301 RESGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEA K NLKVLIKSLSRLL
Sbjct: 361 LGFTGDEAIKPNLKVLIKSLSRLL 384

[Close]

BLAST of Carg12324-RA vs. NCBI nr
Match: XP_023554510.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554511.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023554512.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 673.7 bits (1737), Expect = 3.7e-190
Identity = 352/384 (91.67%), Postives = 370/384 (96.35%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MV D   QVA FSVALPSSLVTLPHRSS+RLSYHLP GLK+KVKKIK++SA DAGHS PP
Sbjct: 1   MVGDARVQVAAFSVALPSSLVTLPHRSSSRLSYHLPFGLKSKVKKIKATSA-DAGHSQPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSERRNPLA+FLDVPRTVWR+TLRPLSNFGFG+RSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERRNPLALFLDVPRTVWRRTLRPLSNFGFGRRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIR+NPSLRCIETVVE+EDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRVNPSLRCIETVVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           II+P NSLVEVNQSGLLMET+IDITPR+PIPVPSAGPLDSECIKEGLILCDK KMKGHQG
Sbjct: 181 IIIPLNSLVEVNQSGLLMETMIDITPRDPIPVPSAGPLDSECIKEGLILCDKHKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLD LVGIFTRLGREAEEIGL+NTF+LAQRVALV+EEA+PLLLKIQAMAEDVQPLLAE+
Sbjct: 241 VSLDALVGIFTRLGREAEEIGLTNTFSLAQRVALVVEEARPLLLKIQAMAEDVQPLLAEV 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLT SLSHATEDLRSVHASIMTPENT LLQKSIYTLI TLKNIESLSSEL
Sbjct: 301 RDSGLLKEVENLTSSLSHATEDLRSVHASIMTPENTELLQKSIYTLIHTLKNIESLSSEL 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEATKRNLK+LIKSLSRLL
Sbjct: 361 LGFTGDEATKRNLKLLIKSLSRLL 383

[Close]

BLAST of Carg12324-RA vs. NCBI nr
Match: XP_022952170.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022952171.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_022952172.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_022952173.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022952174.1 protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 668.3 bits (1723), Expect = 1.6e-188
Identity = 348/384 (90.62%), Postives = 368/384 (95.83%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MV D   QVA FSVALPSSLVTLPH+SS+RLSYHLP GLK+KVKKIK++SA DAGHS PP
Sbjct: 1   MVGDARVQVAAFSVALPSSLVTLPHKSSSRLSYHLPFGLKSKVKKIKATSA-DAGHSQPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSER NPLA+FLDVPRTVWR+TLRPLSNFGFG+RSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERTNPLALFLDVPRTVWRRTLRPLSNFGFGRRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIR+NPSLRCIET+VE+EDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRVNPSLRCIETIVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           II+P NSLVEVNQSGLLMET+IDITPR+PIPVPS GPLDSECIKEGLILCDK KMKGHQG
Sbjct: 181 IIIPLNSLVEVNQSGLLMETMIDITPRDPIPVPSVGPLDSECIKEGLILCDKHKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLD LVGIFTRLGREAEEIGL+NTF+LAQRVALV+EEA+PLLLKIQAMAEDVQPLLAE+
Sbjct: 241 VSLDALVGIFTRLGREAEEIGLTNTFSLAQRVALVVEEARPLLLKIQAMAEDVQPLLAEV 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLT SLSHATEDLRSVHASIMTPENT LLQKSIYTLI TLKNIESLSSEL
Sbjct: 301 RDSGLLKEVENLTSSLSHATEDLRSVHASIMTPENTELLQKSIYTLIHTLKNIESLSSEL 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEATKRNLK+LIKSLSRLL
Sbjct: 361 LGFTGDEATKRNLKLLIKSLSRLL 383

[Close]

BLAST of Carg12324-RA vs. TAIR10
Match: AT3G20320.1 (trigalactosyldiacylglycerol2)

HSP 1 Score: 478.0 bits (1229), Expect = 5.4e-135
Identity = 248/367 (67.57%), Postives = 299/367 (81.47%), Query Frame = 0


Query: 18  SSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPPSSSERRNPLAIFLDVPR 77
           SS++  P  S N + Y LP   + +   ++++S +DA H   PSS   +NPL + LDVPR
Sbjct: 17  SSMIACPRVSPNGVPY-LPPKPRTRHLVVRAASNSDAAHG-QPSSDGGKNPLTVVLDVPR 76

Query: 78  TVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFE 137
            +WRQTL+PLS+FGFG+RSIWEGGVGLF+VSGA LL LS AWLRGFQ+RSKFRKY  VFE
Sbjct: 77  NIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFE 136

Query: 138 FAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVPRNSLVEVNQSGLL 197
            + A GI TGTPVRIRGVTVG +IR+NPSL+ IE V E+EDDKII+PRNSLVEVNQSGLL
Sbjct: 137 LSHASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLL 196

Query: 198 METVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQGVSLDELVGIFTRLGREA 257
           MET+IDI PRNPIP PS GPL  EC KEGLI+CD+Q +KG QGVSLDELVGIFTR+GRE 
Sbjct: 197 METMIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREV 256

Query: 258 EEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAELRDSGLLKEVENLTKSLS 317
           E IG++NT++LA+R A VIEEA+PLL KIQ          +E RDSGLLKEVE LT+SL+
Sbjct: 257 EAIGVANTYSLAERAASVIEEARPLLKKIQXXXXXXXXXXSEFRDSGLLKEVECLTRSLT 316

Query: 318 HATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSELLGFTGDEATKRNLKVLI 377
            A++DLR V++SIMTPENT L+QKSIYTL+ TLKN+ES+SS++LGFTGDEAT++NLK+LI
Sbjct: 317 QASDDLRKVNSSIMTPENTELIQKSIYTLVYTLKNVESISSDILGFTGDEATRKNLKLLI 376

Query: 378 KSLSRLL 385
           KSLSRLL
Sbjct: 377 KSLSRLL 381

[Close]

BLAST of Carg12324-RA vs. Swiss-Prot
Match: sp|Q9LTR2|TGD2_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TGD2 PE=1 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 9.7e-134
Identity = 248/367 (67.57%), Postives = 299/367 (81.47%), Query Frame = 0


Query: 18  SSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPPSSSERRNPLAIFLDVPR 77
           SS++  P  S N + Y LP   + +   ++++S +DA H   PSS   +NPL + LDVPR
Sbjct: 17  SSMIACPRVSPNGVPY-LPPKPRTRHLVVRAASNSDAAHG-QPSSDGGKNPLTVVLDVPR 76

Query: 78  TVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFE 137
            +WRQTL+PLS+FGFG+RSIWEGGVGLF+VSGA LL LS AWLRGFQ+RSKFRKY  VFE
Sbjct: 77  NIWRQTLKPLSDFGFGKRSIWEGGVGLFIVSGATLLALSWAWLRGFQMRSKFRKYQTVFE 136

Query: 138 FAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVPRNSLVEVNQSGLL 197
            + A GI TGTPVRIRGVTVG +IR+NPSL+ IE V E+EDDKII+PRNSLVEVNQSGLL
Sbjct: 137 LSHASGICTGTPVRIRGVTVGTIIRVNPSLKNIEAVAEIEDDKIIIPRNSLVEVNQSGLL 196

Query: 198 METVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQGVSLDELVGIFTRLGREA 257
           MET+IDI PRNPIP PS GPL  EC KEGLI+CD+Q +KG QGVSLDELVGIFTR+GRE 
Sbjct: 197 METMIDIMPRNPIPEPSVGPLHPECGKEGLIVCDRQTIKGVQGVSLDELVGIFTRIGREV 256

Query: 258 EEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAELRDSGLLKEVENLTKSLS 317
           E IG++NT++LA+R A VIEEA+PLL KIQ          +E RDSGLLKEVE LT+SL+
Sbjct: 257 EAIGVANTYSLAERAASVIEEARPLLKKIQXXXXXXXXXXSEFRDSGLLKEVECLTRSLT 316

Query: 318 HATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSELLGFTGDEATKRNLKVLI 377
            A++DLR V++SIMTPENT L+QKSIYTL+ TLKN+ES+SS++LGFTGDEAT++NLK+LI
Sbjct: 317 QASDDLRKVNSSIMTPENTELIQKSIYTLVYTLKNVESISSDILGFTGDEATRKNLKLLI 376

Query: 378 KSLSRLL 385
           KSLSRLL
Sbjct: 377 KSLSRLL 381

[Close]

BLAST of Carg12324-RA vs. Swiss-Prot
Match: sp|Q1XDB5|YCF22_PYRYE (Uncharacterized protein ycf22 OS=Pyropia yezoensis OX=2788 GN=ycf22 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-19
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 0


Query: 102 VGLFLVSGAILLTLSLAWLRGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVI 161
           +G   +    LL++SL W        K   Y A  EF  A GI  GT VR+RG+ VG V+
Sbjct: 13  LGACFLGSVTLLSISL-W-NIINQAGKNHSYKAFIEFDSAYGIQEGTAVRLRGLPVGKVV 72

Query: 162 RINPSLRCIETVVELEDDKIIVPRNSLVEVNQSGLLMETVIDITPRNPIPVP----SAGP 221
            I+ S   I T +E++    I+P+ SL+E NQ+GLL +TVIDI P + + +      AGP
Sbjct: 73  GISQSSNSILTSIEIKSSSTIIPKTSLIETNQTGLLNDTVIDIIPLSKLSIDYSSIKAGP 132

Query: 222 LDSECIKEGLILCDKQKMKGHQGVSLDELVGIFTRLGREAEE 260
           L   C     I+C+   +KG +G++ D+L+   TR+ +  ++
Sbjct: 133 LSGAC-DNSQIICNLNYLKGERGLNYDDLIRATTRISQRFDD 171

[Close]

BLAST of Carg12324-RA vs. Swiss-Prot
Match: sp|P51372|YCF22_PORPU (Uncharacterized protein ycf22 OS=Porphyra purpurea OX=2787 GN=ycf22 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-17
Identity = 48/137 (35.04%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 127 SKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVPRN 186
           SK + Y    EF  A GI  GT VR+RG+ +G V+ I+ S   I T +E++    I+P+ 
Sbjct: 36  SKNKSYKVFVEFDSAYGIQEGTSVRLRGLPIGKVVGISQSSHSILTRIEIQSCNTIIPKT 95

Query: 187 SLVEVNQSGLLMETVIDITPRNPIPVP----SAGPLDSECIKEGLILCDKQKMKGHQGVS 246
           SL+E NQ+GLL +T+IDI P   +         GPL   C     I+C    ++G +G++
Sbjct: 96  SLIETNQTGLLNDTIIDIVPFTTLNQEYHSLKEGPLSKTC-DSNQIICHLNYLQGERGLN 155

Query: 247 LDELVGIFTRLGREAEE 260
            D+L+   TR+ +  ++
Sbjct: 156 YDDLIRATTRISQRFDD 171

[Close]

BLAST of Carg12324-RA vs. Swiss-Prot
Match: sp|P46315|YCF22_ANTSP (Uncharacterized protein ycf22 OS=Antithamnion sp. OX=2767 GN=ycf22 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.5e-13
Identity = 43/147 (29.25%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 128 KFRK---YLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVP 187
           K++K   Y    EF  A GI  GT V +RGV +G +  +  +   +   + ++ +KI++P
Sbjct: 15  KYKKKHGYSLFVEFTHAYGIGEGTSVNMRGVNIGYIKNLQINSNSVLVSIYIKSEKILIP 74

Query: 188 RNSLVEVNQSGLLMETVIDITPR---NPIPVPSAGPLDSECIKEGLILCDKQKMKGHQGV 247
           +NS++E NQ+ L   T+IDI P    N   +      +  C  +  I C+ Q + G +G+
Sbjct: 75  KNSIIETNQTSLFNNTIIDIIPLEKINNYSIRDFNVFNQNCY-DLQIFCNNQYIIGDRGL 134

Query: 248 SLDELVGIFTRLGREAEEIGLSNTFAL 269
           + D+L+   TR+ +  ++    N F L
Sbjct: 135 NYDDLIRATTRIAQRFDDPRFFNLFYL 160

[Close]

BLAST of Carg12324-RA vs. TrEMBL
Match: tr|A0A0A0K2X5|A0A0A0K2X5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027260 PE=4 SV=1)

HSP 1 Score: 614.0 bits (1582), Expect = 2.3e-172
Identity = 327/386 (84.72%), Postives = 349/386 (90.41%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRL--SYHLPLGLKAKVKKIKSSSATDAGHSV 60
           MV D   QV   SV LPSSLVTLPHRSS+RL  SYHLPLGLK+KVK+IK++SA DAGHS 
Sbjct: 1   MVGDIRVQVVTCSVTLPSSLVTLPHRSSSRLSYSYHLPLGLKSKVKQIKATSA-DAGHSQ 60

Query: 61  PPSSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLA 120
           PPSSSERRNPL++FLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLA
Sbjct: 61  PPSSSERRNPLSLFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLA 120

Query: 121 WLRGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELED 180
           WLRGFQLRSKFRKYLAVFEFAQA GIS GTPVRIRGVTVGNVIR+NPSLRCIETVVE+ED
Sbjct: 121 WLRGFQLRSKFRKYLAVFEFAQASGISVGTPVRIRGVTVGNVIRVNPSLRCIETVVEVED 180

Query: 181 DKIIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGH 240
           DKII+PRNSLVEVNQSGLLMET+IDITPR+PIPVPSAGPLD ECI+EGLILCDKQK+KG+
Sbjct: 181 DKIIIPRNSLVEVNQSGLLMETMIDITPRDPIPVPSAGPLDPECIQEGLILCDKQKIKGY 240

Query: 241 QGVSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLA 300
           QGVSLD LVGIFTRLGREAEEIGL+NTF LAQRVALVIEEAKPLLLKIQAMAEDVQPLLA
Sbjct: 241 QGVSLDALVGIFTRLGREAEEIGLTNTFLLAQRVALVIEEAKPLLLKIQAMAEDVQPLLA 300

Query: 301 ELRDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSS 360
           E+RDSGLLKEVE+LT+SLSHATEDLRSV ASI+TPENT LLQKSI               
Sbjct: 301 EVRDSGLLKEVESLTRSLSHATEDLRSVQASILTPENTELLQKSIXXXXXXXXXXXXXXX 360

Query: 361 ELLGFTGDEATKRNLKVLIKSLSRLL 385
              GFTGDEATKRNLK+LI+SLSRLL
Sbjct: 361 XXXGFTGDEATKRNLKLLIRSLSRLL 385

[Close]

BLAST of Carg12324-RA vs. TrEMBL
Match: tr|A0A2P5G0N9|A0A2P5G0N9_9ROSA (Mce/MlaD OS=Trema orientalis OX=63057 GN=TorRG33x02_007920 PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 9.7e-155
Identity = 286/384 (74.48%), Postives = 339/384 (88.28%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MV +   QV+  S  L S L T+  RSSNRL Y L    + K+ +I S++++D GH  PP
Sbjct: 1   MVGNPMVQVSTCSTILFSPLGTVQRRSSNRLPY-LQSRSRRKIAQI-SATSSDTGHGQPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
            SSE++NPLA+ LDVP+TVW++TLRPLS+FGFG RSIWEGGVGLFLVSGA++L LSLAWL
Sbjct: 61  -SSEKKNPLAVVLDVPKTVWKRTLRPLSDFGFGHRSIWEGGVGLFLVSGAVILALSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQ+RSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNV+R+NPSL+ IE VVE+EDDK
Sbjct: 121 RGFQMRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVVRVNPSLKNIEAVVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           I++PRNSL+EVNQSGLLMET+IDITPR+PIP    GPLD EC+KEGLI+CD+QK++GHQG
Sbjct: 181 IVIPRNSLIEVNQSGLLMETIIDITPRDPIPNALVGPLDPECVKEGLIVCDRQKVRGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLD LVGIFTRLGR+ EEIG++NT+ LAQRV+ VIEEAKPLL KI+AMAED+QPLLAE+
Sbjct: 241 VSLDALVGIFTRLGRDVEEIGIANTYTLAQRVSSVIEEAKPLLTKIEAMAEDIQPLLAEV 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLTKSL+ A+ED+R VH+SIMTPENT L+QKSIYTLI TLKNIE++SS++
Sbjct: 301 RDSGLLKEVENLTKSLAQASEDVRRVHSSIMTPENTELIQKSIYTLIFTLKNIENISSDI 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEAT+RNLK+LIKSLSRLL
Sbjct: 361 LGFTGDEATRRNLKLLIKSLSRLL 381

[Close]

BLAST of Carg12324-RA vs. TrEMBL
Match: tr|A0A2I4E140|A0A2I4E140_9ROSI (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108985313 PE=4 SV=1)

HSP 1 Score: 553.9 bits (1426), Expect = 2.8e-154
Identity = 285/377 (75.60%), Postives = 333/377 (88.33%), Query Frame = 0


Query: 8   QVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPPSSSERRN 67
           QV+     L SSL+TLPH SSN L   LP   + K  ++++ S +DA HS P SSS+++N
Sbjct: 8   QVSTCPTVLSSSLITLPHGSSNCLPC-LPSRPRMKFTRVRAMS-SDAAHSQPSSSSDKKN 67

Query: 68  PLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWLRGFQLRS 127
           PLA+ LDVPR +WRQTLRPLS+FGFG+RSIWEGGVGLFLVSG +LL LSLAWLRGFQ+RS
Sbjct: 68  PLAVVLDVPRNIWRQTLRPLSDFGFGRRSIWEGGVGLFLVSGTVLLALSLAWLRGFQIRS 127

Query: 128 KFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDKIIVPRNS 187
           KFRKYLAVFEF+QA GI TGTPVRIRGVTVGNVI +NPSL+ IE VVE+EDDKI +PRNS
Sbjct: 128 KFRKYLAVFEFSQASGICTGTPVRIRGVTVGNVIGVNPSLKSIEAVVEVEDDKIFIPRNS 187

Query: 188 LVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQGVSLDELV 247
           LVEVNQSGLLMET+IDITPR+PIP PS GPLD EC+KEGLILC++QKMKG+QGVSLD LV
Sbjct: 188 LVEVNQSGLLMETMIDITPRDPIPTPSVGPLDPECVKEGLILCERQKMKGYQGVSLDALV 247

Query: 248 GIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAELRDSGLLK 307
           GIFTRLGRE EEIG++NT+ LA+RV+LVIEEAKPLL KI+AMA+DVQPLLAE+RDSGLLK
Sbjct: 248 GIFTRLGREVEEIGVANTYLLAERVSLVIEEAKPLLTKIKAMADDVQPLLAEVRDSGLLK 307

Query: 308 EVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSELLGFTGDE 367
           EVENLT+SL+ A EDLR V++SIMTPENT L+QKSIYTLI TLKN+E++SS++LGFTGDE
Sbjct: 308 EVENLTRSLTQAAEDLRRVNSSIMTPENTELIQKSIYTLIFTLKNVENISSDVLGFTGDE 367

Query: 368 ATKRNLKVLIKSLSRLL 385
           AT+RNLK+LIKSLSRLL
Sbjct: 368 ATRRNLKLLIKSLSRLL 382

[Close]

BLAST of Carg12324-RA vs. TrEMBL
Match: tr|A0A1S3BRQ6|A0A1S3BRQ6_CUCME (protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492571 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.4e-153
Identity = 285/318 (89.62%), Postives = 302/318 (94.97%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MV D   QV   SV LPSSLVTLPHRSSNRLSYHLPLG K+KVK+IK++SA DAGHS PP
Sbjct: 1   MVGDIRVQVVTCSVTLPSSLVTLPHRSSNRLSYHLPLGRKSKVKQIKATSA-DAGHSQPP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSSERRNPL++FLDVPRTVWRQTLRPLSNFGFG+RSIWEGGVGLFLVSGAILLTLSLAWL
Sbjct: 61  SSSERRNPLSLFLDVPRTVWRQTLRPLSNFGFGRRSIWEGGVGLFLVSGAILLTLSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQLRSKFRKYLAVFEFAQA GIS GTPVRIRGVTVGNVIR+NPSLRCIETVVE+EDDK
Sbjct: 121 RGFQLRSKFRKYLAVFEFAQASGISVGTPVRIRGVTVGNVIRVNPSLRCIETVVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           II+PRNSLVEVNQSGLLMET+IDITPR+PIPVPSAGPLD ECI+EGLILCDKQKMKGHQG
Sbjct: 181 IIIPRNSLVEVNQSGLLMETMIDITPRDPIPVPSAGPLDLECIQEGLILCDKQKMKGHQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLD LVGIFTRLGREAEEIGL+NTF LAQRVALVIEEAKPLLLKIQAMAEDVQPLLAE+
Sbjct: 241 VSLDALVGIFTRLGREAEEIGLTNTFLLAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEV 300

Query: 301 RDSGLLKEVENLTKSLSH 319
           RDSGLLKEVE+LT+SLSH
Sbjct: 301 RDSGLLKEVESLTRSLSH 317

[Close]

BLAST of Carg12324-RA vs. TrEMBL
Match: tr|A0A2P4KCM1|A0A2P4KCM1_QUESU (Protein trigalactosyldiacylglycerol 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_50512 PE=4 SV=1)

HSP 1 Score: 547.0 bits (1408), Expect = 3.4e-152
Identity = 285/384 (74.22%), Postives = 334/384 (86.98%), Query Frame = 0


Query: 1   MVVDTHAQVAKFSVALPSSLVTLPHRSSNRLSYHLPLGLKAKVKKIKSSSATDAGHSVPP 60
           MV  +  QV+     L SSL+TLP  SSN L   LP     K+ ++ + SA DAGHS  P
Sbjct: 1   MVGKSFVQVSTCPTVLSSSLITLPPSSSNCLPC-LPSRPCKKLTRVVAMSA-DAGHS-QP 60

Query: 61  SSSERRNPLAIFLDVPRTVWRQTLRPLSNFGFGQRSIWEGGVGLFLVSGAILLTLSLAWL 120
           SSS ++NPLA+ LDVPR +WRQTLRPLS+FGFG+ SIWEGGVGLFLVSGA++  LSLAWL
Sbjct: 61  SSSTKKNPLAVVLDVPRNMWRQTLRPLSDFGFGRGSIWEGGVGLFLVSGAVIFALSLAWL 120

Query: 121 RGFQLRSKFRKYLAVFEFAQACGISTGTPVRIRGVTVGNVIRINPSLRCIETVVELEDDK 180
           RGFQ+RSKFRKY   FEF+QACGISTGTPVRIRGVTVGNVIR+NPSL+ IE  VE+EDDK
Sbjct: 121 RGFQIRSKFRKYNTFFEFSQACGISTGTPVRIRGVTVGNVIRVNPSLKSIEAEVEVEDDK 180

Query: 181 IIVPRNSLVEVNQSGLLMETVIDITPRNPIPVPSAGPLDSECIKEGLILCDKQKMKGHQG 240
           II+PRNSLVEVNQSGLLMET+IDITPR+PIP PSAGPLD EC+KEGLILCD+QK+KG+QG
Sbjct: 181 IIIPRNSLVEVNQSGLLMETMIDITPRDPIPTPSAGPLDKECVKEGLILCDRQKLKGYQG 240

Query: 241 VSLDELVGIFTRLGREAEEIGLSNTFALAQRVALVIEEAKPLLLKIQAMAEDVQPLLAEL 300
           VSLD LVGIFTRLGRE EEIG++NT++LA+R  LV+EEAKPLL KI+AMA+D+QPLLAE+
Sbjct: 241 VSLDALVGIFTRLGREVEEIGVANTYSLAERAYLVVEEAKPLLTKIKAMADDIQPLLAEV 300

Query: 301 RDSGLLKEVENLTKSLSHATEDLRSVHASIMTPENTALLQKSIYTLILTLKNIESLSSEL 360
           RDSGLLKEVENLT+SL+ A+EDLR VH+SIMTPENT ++QKSIYTLI TLKNIE++SS++
Sbjct: 301 RDSGLLKEVENLTRSLTQASEDLRRVHSSIMTPENTEVIQKSIYTLIFTLKNIENISSDI 360

Query: 361 LGFTGDEATKRNLKVLIKSLSRLL 385
           LGFTGDEAT+RNLK+LIKSLSRLL
Sbjct: 361 LGFTGDEATRRNLKLLIKSLSRLL 381

The following BLAST results are available for this feature:

BLAST of Carg12324-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948293.1	5.7e-207	100.00	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita moschata] >...	[more]
XP_023523118.1	6.5e-203	98.44	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita pepo subsp....	[more]
XP_022998942.1	6.7e-200	96.88	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like [Cucurbita maxima] >XP...	[more]
XP_023554510.1	3.7e-190	91.67	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita ...	[more]
XP_022952170.1	1.6e-188	90.63	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 [Cucurbita ...	[more]

BLAST of Carg12324-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20320.1	5.4e-135	67.57	trigalactosyldiacylglycerol2	[more]

BLAST of Carg12324-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LTR2\|TGD2_ARATH	9.7e-134	67.57	Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana OX=...	[more]
sp\|Q1XDB5\|YCF22_PYRYE	1.6e-19	35.80	Uncharacterized protein ycf22 OS=Pyropia yezoensis OX=2788 GN=ycf22 PE=4 SV=1	[more]
sp\|P51372\|YCF22_PORPU	7.5e-17	35.04	Uncharacterized protein ycf22 OS=Porphyra purpurea OX=2787 GN=ycf22 PE=4 SV=1	[more]
sp\|P46315\|YCF22_ANTSP	8.5e-13	29.25	Uncharacterized protein ycf22 OS=Antithamnion sp. OX=2767 GN=ycf22 PE=4 SV=1	[more]

BLAST of Carg12324-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2X5\|A0A0A0K2X5_CUCSA	2.3e-172	84.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027260 PE=4 SV=1	[more]
tr\|A0A2P5G0N9\|A0A2P5G0N9_9ROSA	9.7e-155	74.48	Mce/MlaD OS=Trema orientalis OX=63057 GN=TorRG33x02_007920 PE=4 SV=1	[more]
tr\|A0A2I4E140\|A0A2I4E140_9ROSI	2.8e-154	75.60	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic-like isoform X1 OS=Juglans ...	[more]
tr\|A0A1S3BRQ6\|A0A1S3BRQ6_CUCME	1.4e-153	89.62	protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic isoform X1 OS=Cucumis melo ...	[more]
tr\|A0A2P4KCM1\|A0A2P4KCM1_QUESU	3.4e-152	74.22	Protein trigalactosyldiacylglycerol 2, chloroplastic OS=Quercus suber OX=58331 G...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR039342	TGD2-like
IPR003399	Mce/MlaD

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12324	Carg12324	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12324-RA	Carg12324-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12324-RA.three_prime_UTR.1	Carg12324-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12324-RA.CDS.5	Carg12324-RA.CDS.5	CDS
Carg12324-RA.CDS.4	Carg12324-RA.CDS.4	CDS
Carg12324-RA.CDS.3	Carg12324-RA.CDS.3	CDS
Carg12324-RA.CDS.2	Carg12324-RA.CDS.2	CDS
Carg12324-RA.CDS.1	Carg12324-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12324-RA.five_prime_UTR.1	Carg12324-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12324-RA.exon.5	Carg12324-RA.exon.5	exon
Carg12324-RA.exon.4	Carg12324-RA.exon.4	exon
Carg12324-RA.exon.3	Carg12324-RA.exon.3	exon
Carg12324-RA.exon.2	Carg12324-RA.exon.2	exon
Carg12324-RA.exon.1	Carg12324-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003399	Mce/MlaD	PFAM	PF02470	MlaD	coord: 131..206 e-value: 4.5E-13 score: 49.2
IPR039342	Protein TRIGALACTOSYLDIACYLGLYCEROL 2-like	PANTHER	PTHR34675	FAMILY NOT NAMED	coord: 18..384
None	No IPR available	PANTHER	PTHR34675:SF1	PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 2, CHLOROPLASTIC	coord: 18..384