Carg12314-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12314-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	fasciclin-like arabinogalactan protein 12
Location	Cucurbita_argyrosperma_scaffold_074 : 257226 .. 258249 (-)
Sequence length	937

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAACTCTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGTATTACTATCACAAAAACGCTCACTTTTAATAATATTATGTATCGTTCGTTAGCTATCGTATTCATTATTTCTTGTAAAAATACAGGTACGCTCAACTCCCTGGGCGACCAAGAAAAAGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCAGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTTGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCGTCTTCCAGCCCCGTCCCCCACCTCCACCTCCAGCGCCGGATAACTCCAAGAAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCGGCCGATGACAACTCGGCTGCCGTGGCTCTCACCGGAATGTCGGTGGTCTCCGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGATTGAATTTTCTGGGTGTTGTTTGGTGTGGATAAATTAATATTGGTTTGTGTTGTTGTTTTGATTTAGGGTATTTTATGTTTTTTGTTTTTTTTAAGGTTTGTGTTAAATTTATTTGAAGAGAATTATTAAAATAATGTATGATAATTTTTATATTAAAAGATTTGTTAATAGAATTATTAATTGGGTTATGTGTTGAAATATCAATAATGAATAATATTG

mRNA sequence

ATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAACTCTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGTACGCTCAACTCCCTGGGCGACCAAGAAAAAGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCAGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTTGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCGTCTTCCAGCCCCGTCCCCCACCTCCACCTCCAGCGCCGGATAACTCCAAGAAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCGGCCGATGACAACTCGGCTGCCGTGGCTCTCACCGGAATGTCGGTGGTCTCCGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGATTGAATTTTCTGGGTGTTGTTTGGTGTGGATAAATTAATATTGGTTTGTGTTGTTGTTTTGATTTAGGGTATTTTATGTTTTTTGTTTTTTTTAAGGTTTGTGTTAAATTTATTTGAAGAGAATTATTAAAATAATGTATGATAATTTTTATATTAAAAGATTTGTTAATAGAATTATTAATTGGGTTATGTGTTGAAATATCAATAATGAATAATATTG

Coding sequence (CDS)

ATGAATACCCTCTTCTCTCTCATCATCTTCCTCCTCCTCCTCCTCCGCCGCTGTTCCGGCCAGTCGCCGGCCGAAGCTCCGGGGCCGCCGCCGCCCATGAACATCACAAAAATACTTGAAAAGGCTGGCCAGTTCACTGTCCTCATAAGGCTGCTGAAGAGCACTCAAGTGGCTAACCAAATCAACTCTCAGCTCAATGACTCCAATTCTGAGCTCACCCTTTTCGCCCCAACTGATAATGCCTTCTCCACCCTCCAATCGGGTACGCTCAACTCCCTGGGCGACCAAGAAAAAGTTGAGCTTCTCCAATTCCACATGATCCCGAATTTCCTATCGCTCTCGAACTTCCAAACGGTTAGCAATCCGGTGATAACTCAAGCAGGCGACGCTTACGAGTTTCCTCTCAATGTCACCACCTCTGGCAACTCCGTCAACGTCTCCACCGGCCTCGTCAATACCTCCATCTCCGGTACTGTCTACACCGACAACCAACTTGCCATCTACCAGGTTGACTCCGTCCTCAAACCGATCGGCGTCTTCCAGCCCCGTCCCCCACCTCCACCTCCAGCGCCGGATAACTCCAAGAAAAAGGCCAAGGCCATTTCCGAGAGCCCCAAGGATTCGGCCGATGACAACTCGGCTGCCGTGGCTCTCACCGGAATGTCGGTGGTCTCCGCTGTCGCTGCCGCCGGAATGTTGGTGTGGATTAGTTCTTGA

Protein sequence

MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVFQPRPPPPPPAPDNSKKKAKAISESPKDSADDNSAAVALTGMSVVSAVAAAGMLVWISS

Homology

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BLAST of Carg12314-RA vs. NCBI nr
Match: XP_022948355.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita moschata])

HSP 1 Score: 389.4 bits (999), Expect = 8.6e-105
Identity = 234/238 (98.32%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60
           MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ
Sbjct: 1   MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60

Query: 61  INSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVS 120
           IN+QLNDSNSELTLFAPTDNAFSTLQSGTLNSL DQEKVELLQFHMIPNFLSLSNFQTVS
Sbjct: 61  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 120

Query: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 180
           NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF
Sbjct: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 180

Query: 181 QPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSVVSAVAAAGMLVWISS 239
           QPXXXXXXXXXXXXXXXXXXXXXX  DSADDNSAAVALTGMSVVSAVAAAGMLVWISS
Sbjct: 181 QPXXXXXXXXXXXXXXXXXXXXXXPKDSADDNSAAVALTGMSVVSAVAAAGMLVWISS 238

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BLAST of Carg12314-RA vs. NCBI nr
Match: XP_022998893.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 9.5e-104
Identity = 233/238 (97.90%), Postives = 235/238 (98.74%), Query Frame = 0


Query: 1   MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60
           MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ
Sbjct: 1   MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60

Query: 61  INSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVS 120
           IN+QLNDSNSELTLFAPTDNAFSTLQSGTLNSL DQEKVELLQFHMIPNFLSLSNFQTVS
Sbjct: 61  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 120

Query: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 180
           NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIG+F
Sbjct: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGIF 180

Query: 181 QPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSVVSAVAAAGMLVWISS 239
           QPXXXXXXXXXXXXXXXXXXXXXXX DSADDNSAAVALT MSVVSAVAAAGMLVWISS
Sbjct: 181 QPXXXXXXXXXXXXXXXXXXXXXXXKDSADDNSAAVALTRMSVVSAVAAAGMLVWISS 238

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BLAST of Carg12314-RA vs. NCBI nr
Match: XP_023523295.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 383.6 bits (984), Expect = 4.7e-103
Identity = 233/238 (97.90%), Postives = 234/238 (98.32%), Query Frame = 0


Query: 1   MNTLFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60
           MNTLFSLIIF LLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ
Sbjct: 1   MNTLFSLIIF-LLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 60

Query: 61  INSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVS 120
           IN+QLNDSNSELTLFAPTDNAFSTLQSGTLNSL DQEKVELLQFHMIPNFLSLSNFQTVS
Sbjct: 61  INTQLNDSNSELTLFAPTDNAFSTLQSGTLNSLSDQEKVELLQFHMIPNFLSLSNFQTVS 120

Query: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 180
           NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF
Sbjct: 121 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 180

Query: 181 QPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSVVSAVAAAGMLVWISS 239
           QPXXXXXXXXXXXXXXXXXXXXXX  DSADDNSAAVALTGMSVVSAVAAAGMLVWISS
Sbjct: 181 QPXXXXXXXXXXXXXXXXXXXXXXPKDSADDNSAAVALTGMSVVSAVAAAGMLVWISS 237

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BLAST of Carg12314-RA vs. NCBI nr
Match: XP_022970427.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 1.5e-85
Identity = 201/242 (83.06%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 1   MNTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVAN 60
           MNTLFSLIIF L L    S GQSPAEAPGPPPPMNI++ILEK GQF++LIRLLKSTQVAN
Sbjct: 1   MNTLFSLIIFFLYLFVGGSFGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQVAN 60

Query: 61  QINSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTV 120
           QIN+QLNDSNSELT+FAPTDNAFS LQSGTLNSL DQEKVELLQFHMIP FLSLSNFQTV
Sbjct: 61  QINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTV 120

Query: 121 SNPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGV 180
           SNPV TQAGDAYEFPLNVTTSGNSVNVS+GL NTSISGTVY+DNQLA+YQ+DSVLKPIGV
Sbjct: 121 SNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPIGV 180

Query: 181 FQPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSV--VSAVAAAG-MLVWI 239
           FQPXXXXXXXXXXXXXXXXXXX     DS DDNS+AV LTGM V    A A AG MLVWI
Sbjct: 181 FQPXXXXXXXXXXXXXXXXXXXSEDPKDSTDDNSSAVPLTGMPVFFTGAAAVAGIMLVWI 240

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BLAST of Carg12314-RA vs. NCBI nr
Match: XP_022964662.1 (fasciclin-like arabinogalactan protein 12 [Cucurbita moschata])

HSP 1 Score: 323.9 bits (829), Expect = 4.4e-85
Identity = 201/242 (83.06%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 1   MNTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVAN 60
           MNTLFSLIIF L L    S GQSPAEAPGPPPPMNI++ILEK GQF++LIRLLKSTQVAN
Sbjct: 1   MNTLFSLIIFFLYLFVGGSYGQSPAEAPGPPPPMNISRILEKGGQFSILIRLLKSTQVAN 60

Query: 61  QINSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTV 120
           QIN+QLNDSNSELT+FAPTDNAFS LQSGTLNSL DQEKVELLQFHMIP FLSLSNFQTV
Sbjct: 61  QINTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTV 120

Query: 121 SNPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGV 180
           SNPV TQAGDAYEFPLNVTTSGNSVNVS+GL NTSISGTVY+DNQLA+YQ+DSVLKPIGV
Sbjct: 121 SNPVRTQAGDAYEFPLNVTTSGNSVNVSSGLTNTSISGTVYSDNQLAVYQIDSVLKPIGV 180

Query: 181 FQPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSV--VSAVAAAG-MLVWI 239
           FQPXXXXXXXXXXXXXXXXXXXX    DS DDNS+AV L GMS     A A AG MLVWI
Sbjct: 181 FQPXXXXXXXXXXXXXXXXXXXXENPKDSTDDNSSAVPLAGMSAFFTGAAAVAGIMLVWI 240

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BLAST of Carg12314-RA vs. TAIR10
Match: AT5G60490.1 (FASCICLIN-like arabinogalactan-protein 12)

HSP 1 Score: 214.2 bits (544), Expect = 9.0e-56
Identity = 106/166 (63.86%), Postives = 140/166 (84.34%), Query Frame = 0


Query: 19  SGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLNDSNSELTLFAPT 78
           S  SPA AP PP P N+TKILEKAGQFTV IRLLKST VANQ+  QLN+S++ +T+FAP+
Sbjct: 24  SQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPS 83

Query: 79  DNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQAGDAYE--FPLN 138
           D++F+ L++GTLNSL D+++VEL+QFH+IP+++S SNFQT+SNP+ TQAGD+ +  FPLN
Sbjct: 84  DSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLN 143

Query: 139 VTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVFQP 183
           VTTSGN+VN+++G+ NT++SG VY+D QLA+YQVD VL P  VF P
Sbjct: 144 VTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDP 189

[Close]

BLAST of Carg12314-RA vs. TAIR10
Match: AT5G03170.1 (FASCICLIN-like arabinogalactan-protein 11)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-53
Identity = 105/180 (58.33%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINS 63
           +FS +    L++    GQ+P  APGP  P NIT ILEKAGQFT+ IRLLKSTQ ++QIN+
Sbjct: 8   IFSNLFIFFLVIATTYGQAP--APGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 64  QLNDSNSE-LTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNP 123
           QLN S+S  LT+FAPTDNAF++L+SGTLNSL DQ+KV+L+QFH++P  +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 124 VITQAGDAY--EFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           + TQAGD    +FPLN+T+SGN VN++TG+V+ +++ +VY+D QLA+YQVD VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185

[Close]

BLAST of Carg12314-RA vs. TAIR10
Match: AT5G44130.1 (FASCICLIN-like arabinogalactan protein 13 precursor)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 85/180 (47.22%), Postives = 114/180 (63.33%), Query Frame = 0


Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINS 63
           L  L++  + L    + Q  A APGP  P+NIT ILEK GQF  LIRLL +TQ+ NQIN 
Sbjct: 6   LLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQINI 65

Query: 64  QLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPV 123
           Q+N S+  +T+ APTDNAF  L+ GTLN L   ++V+L+ +H+ P F +L +  +VSNPV
Sbjct: 66  QINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPV 125

Query: 124 ITQAGD---AYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
            TQA        + LN T  GN VNVSTG+V T +S ++  +  LA+Y VD VL P  +F
Sbjct: 126 RTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185

[Close]

BLAST of Carg12314-RA vs. TAIR10
Match: AT1G03870.1 (FASCICLIN-like arabinoogalactan 9)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 82/176 (46.59%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 7   LIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLN 66
           L+I  +LL  + + Q  A AP P  P+N+T ILEK GQFT  I LL  TQV +Q+N Q+N
Sbjct: 12  LLIAAVLLATKATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVN 71

Query: 67  DSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQ 126
            S+  +T+FAPTDNAF  L+ GTLN L   ++V+L+ +H+ P + S+ +  +VSNPV TQ
Sbjct: 72  SSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQ 131

Query: 127 AG--DAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           A   D   + LN T   N +NVSTG V T IS ++     LA+Y VD VL P  +F
Sbjct: 132 ASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187

[Close]

BLAST of Carg12314-RA vs. TAIR10
Match: AT2G20520.1 (FASCICLIN-like arabinogalactan 6)

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-34
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 2   NTLFSLIIFLLLLLRRCSGQSPAEAPGP---PPPMNITKILEKAGQFTVLIRLLKSTQVA 61
           ++LFS ++ L+ L      QS   AP P     P+N+T ILE   QFT LI+LL +TQV 
Sbjct: 3   SSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVG 62

Query: 62  NQINSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQT 121
            Q++ QLN S+  +T+FAPTDNAF+ L+ GTLNSL  Q++++L+ +H+IP + SLS+   
Sbjct: 63  FQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLL 122

Query: 122 VSNPVITQA--GDAYEFPLNVT--TSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVL 181
            SNPV TQA   D   F LN T     N VNVSTG+V T I+  +     LA+Y VDSVL
Sbjct: 123 ASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVL 182

[Close]

BLAST of Carg12314-RA vs. Swiss-Prot
Match: sp|Q8LEE9|FLA12_ARATH (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.6e-54
Identity = 106/166 (63.86%), Postives = 140/166 (84.34%), Query Frame = 0


Query: 19  SGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLNDSNSELTLFAPT 78
           S  SPA AP PP P N+TKILEKAGQFTV IRLLKST VANQ+  QLN+S++ +T+FAP+
Sbjct: 24  SQPSPAVAPAPPGPTNVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPS 83

Query: 79  DNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQAGDAYE--FPLN 138
           D++F+ L++GTLNSL D+++VEL+QFH+IP+++S SNFQT+SNP+ TQAGD+ +  FPLN
Sbjct: 84  DSSFTGLKAGTLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLN 143

Query: 139 VTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVFQP 183
           VTTSGN+VN+++G+ NT++SG VY+D QLA+YQVD VL P  VF P
Sbjct: 144 VTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDP 189

[Close]

BLAST of Carg12314-RA vs. Swiss-Prot
Match: sp|Q8LEJ6|FLA11_ARATH (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA11 PE=2 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 7.5e-52
Identity = 105/180 (58.33%), Postives = 143/180 (79.44%), Query Frame = 0


Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINS 63
           +FS +    L++    GQ+P  APGP  P NIT ILEKAGQFT+ IRLLKSTQ ++QIN+
Sbjct: 8   IFSNLFIFFLVIATTYGQAP--APGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINT 67

Query: 64  QLNDSNSE-LTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNP 123
           QLN S+S  LT+FAPTDNAF++L+SGTLNSL DQ+KV+L+QFH++P  +++  FQTVSNP
Sbjct: 68  QLNSSSSNGLTVFAPTDNAFNSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNP 127

Query: 124 VITQAGDAY--EFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           + TQAGD    +FPLN+T+SGN VN++TG+V+ +++ +VY+D QLA+YQVD VL P+ +F
Sbjct: 128 LRTQAGDGQNGKFPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185

[Close]

BLAST of Carg12314-RA vs. Swiss-Prot
Match: sp|Q9FFH6|FLA13_ARATH (Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=FLA13 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.6e-36
Identity = 85/180 (47.22%), Postives = 114/180 (63.33%), Query Frame = 0


Query: 4   LFSLIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINS 63
           L  L++  + L    + Q  A APGP  P+NIT ILEK GQF  LIRLL +TQ+ NQIN 
Sbjct: 6   LLLLLLTAVFLSTEITAQRAAPAPGPAGPINITAILEKGGQFVTLIRLLNTTQIGNQINI 65

Query: 64  QLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPV 123
           Q+N S+  +T+ APTDNAF  L+ GTLN L   ++V+L+ +H+ P F +L +  +VSNPV
Sbjct: 66  QINSSSEGMTVLAPTDNAFQNLKPGTLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPV 125

Query: 124 ITQAGD---AYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
            TQA        + LN T  GN VNVSTG+V T +S ++  +  LA+Y VD VL P  +F
Sbjct: 126 RTQASGRDVGGVYGLNFTGQGNQVNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185

[Close]

BLAST of Carg12314-RA vs. Swiss-Prot
Match: sp|Q9ZWA8|FLA9_ARATH (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 82/176 (46.59%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 7   LIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLN 66
           L+I  +LL  + + Q  A AP P  P+N+T ILEK GQFT  I LL  TQV +Q+N Q+N
Sbjct: 12  LLIAAVLLATKATAQPAAPAPEPAGPINLTAILEKGGQFTTFIHLLNITQVGSQVNIQVN 71

Query: 67  DSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQ 126
            S+  +T+FAPTDNAF  L+ GTLN L   ++V+L+ +H+ P + S+ +  +VSNPV TQ
Sbjct: 72  SSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQ 131

Query: 127 AG--DAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           A   D   + LN T   N +NVSTG V T IS ++     LA+Y VD VL P  +F
Sbjct: 132 ASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187

[Close]

BLAST of Carg12314-RA vs. Swiss-Prot
Match: sp|Q9SIL7|FLA6_ARATH (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 2   NTLFSLIIFLLLLLRRCSGQSPAEAPGP---PPPMNITKILEKAGQFTVLIRLLKSTQVA 61
           ++LFS ++ L+ L      QS   AP P     P+N+T ILE   QFT LI+LL +TQV 
Sbjct: 3   SSLFSYVVLLIFLFTIPYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVG 62

Query: 62  NQINSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQT 121
            Q++ QLN S+  +T+FAPTDNAF+ L+ GTLNSL  Q++++L+ +H+IP + SLS+   
Sbjct: 63  FQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDLLL 122

Query: 122 VSNPVITQA--GDAYEFPLNVT--TSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVL 181
            SNPV TQA   D   F LN T     N VNVSTG+V T I+  +     LA+Y VDSVL
Sbjct: 123 ASNPVRTQATGQDGGVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVL 182

[Close]

BLAST of Carg12314-RA vs. TrEMBL
Match: tr|A0A0A0LVA0|A0A0A0LVA0_CUCSA (Arabinogalactan protein 2 OS=Cucumis sativus OX=3659 GN=Csa_1G085380 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 5.2e-82
Identity = 199/241 (82.57%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 2   NTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 61
           N+LFSL+I L+     CS GQSPAEAPGPPPPMNITKILEK GQF VLIRLLK+TQVANQ
Sbjct: 3   NSLFSLVILLIFFFLDCSYGQSPAEAPGPPPPMNITKILEKGGQFNVLIRLLKNTQVANQ 62

Query: 62  INSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVS 121
           IN+QLNDSNSELTLFAPTDNAFS LQSGTLNSL DQEKVELLQFHMIP FLSLSNFQT+S
Sbjct: 63  INTQLNDSNSELTLFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTIS 122

Query: 122 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           NPV TQAGDAYEFPLNVTTSGNSVNVS+GLVNTSISGTVYTDNQLAIYQ+DSVLKPIGVF
Sbjct: 123 NPVRTQAGDAYEFPLNVTTSGNSVNVSSGLVNTSISGTVYTDNQLAIYQIDSVLKPIGVF 182

Query: 182 QPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSVVS---AVAAAGMLVWIS 239
           QPXXXXXXXXXXXXXXXXXXXXXXXX         V L G+SV+S   AV    MLVWI+
Sbjct: 183 QPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLAGVSVISTGAAVVVGIMLVWIN 242

[Close]

BLAST of Carg12314-RA vs. TrEMBL
Match: tr|A0A1S3CKI9|A0A1S3CKI9_CUCME (fasciclin-like arabinogalactan protein 12 OS=Cucumis melo OX=3656 GN=LOC103501848 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 2.9e-80
Identity = 196/241 (81.33%), Postives = 208/241 (86.31%), Query Frame = 0


Query: 2   NTLFSLIIFLLLLLRRCS-GQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQ 61
           N+LFSL+I L+     CS GQSPAEAPGPPPPMNI+KILEK GQF VLIRLLKSTQVANQ
Sbjct: 3   NSLFSLVILLIFFFIDCSYGQSPAEAPGPPPPMNISKILEKGGQFNVLIRLLKSTQVANQ 62

Query: 62  INSQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVS 121
           IN+QLNDSNSELT+FAPTDNAFS LQSGTLNSL DQEKVELLQFHMIP FLSLSNFQT+S
Sbjct: 63  INTQLNDSNSELTIFAPTDNAFSNLQSGTLNSLNDQEKVELLQFHMIPTFLSLSNFQTIS 122

Query: 122 NPVITQAGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 181
           NPV TQAGDAYEFPLNVTTSGNSVN+S+GLVNTSISGTVYTDNQLAIYQ+DSVLKPIGVF
Sbjct: 123 NPVRTQAGDAYEFPLNVTTSGNSVNISSGLVNTSISGTVYTDNQLAIYQIDSVLKPIGVF 182

Query: 182 QPXXXXXXXXXXXXXXXXXXXXXXXXDSADDNSAAVALTGMSVVS---AVAAAGMLVWIS 239
           QPXXXXXXXXXXXXXXXXXXXXXXXX         V L G+S  S   AV    MLVWI+
Sbjct: 183 QPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPLAGISSFSTEAAVVVGIMLVWIN 242

[Close]

BLAST of Carg12314-RA vs. TrEMBL
Match: tr|A0A2I4EJJ2|A0A2I4EJJ2_9ROSI (fasciclin-like arabinogalactan protein 12 OS=Juglans regia OX=51240 GN=LOC108990139 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.9e-61
Identity = 124/180 (68.89%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 7   LIIFLLLLLRRCSG--QSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQ 66
           L + LL+ L  C+     PA+AP PP P N+TKILEKAGQFT+LIRL+KST+VA+Q+N Q
Sbjct: 7   LSLSLLVFLFHCTKTLAQPAQAPAPPGPTNVTKILEKAGQFTILIRLMKSTKVADQLNQQ 66

Query: 67  LNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVI 126
           LNDSN+ +T FAPTDNAFS+L+SGTLN+L DQ+KV+L+QFH++PNFLSLSNFQTVSNPV 
Sbjct: 67  LNDSNNGITFFAPTDNAFSSLKSGTLNALNDQQKVQLIQFHILPNFLSLSNFQTVSNPVR 126

Query: 127 TQAGDAYE--FPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVFQP 183
           TQAGD     +PLNVTTSGN VN+STGLVNT++ GTVYTDNQLA+YQ+DSVL P  +F P
Sbjct: 127 TQAGDTGPGLYPLNVTTSGNQVNISTGLVNTTVGGTVYTDNQLAVYQIDSVLLPQDIFAP 186

[Close]

BLAST of Carg12314-RA vs. TrEMBL
Match: tr|A0A2N9HWN0|A0A2N9HWN0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44025 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 126/182 (69.23%), Postives = 151/182 (82.97%), Query Frame = 0


Query: 4   LFSLIIFLLLLLR-RCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQIN 63
           LFS+ + L+ L     +   PA AP PP P NITKILEKAGQFT+LIRL+KST+VA+QIN
Sbjct: 6   LFSISLVLIFLFHCTTTLAQPAAAPAPPGPTNITKILEKAGQFTILIRLIKSTKVADQIN 65

Query: 64  SQLNDSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNP 123
            QLNDSN+ LT FAP+D+AFS L++GTLN L D++KVEL+QFH++PNFLSL+NFQTVSNP
Sbjct: 66  QQLNDSNNGLTFFAPSDSAFSNLKAGTLNGLTDEQKVELIQFHILPNFLSLTNFQTVSNP 125

Query: 124 VITQAGD--AYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVF 183
           V TQAGD  A EFPLNVTTSGN VN++TGLVNT++ GTVYTDNQLA+YQVDSVL P  +F
Sbjct: 126 VRTQAGDSRAGEFPLNVTTSGNQVNITTGLVNTTVGGTVYTDNQLAVYQVDSVLLPQNIF 185

[Close]

BLAST of Carg12314-RA vs. TrEMBL
Match: tr|A0A2P5E4E1|A0A2P5E4E1_9ROSA (FAS1 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_234060 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.6e-59
Identity = 113/176 (64.20%), Postives = 149/176 (84.66%), Query Frame = 0


Query: 7   LIIFLLLLLRRCSGQSPAEAPGPPPPMNITKILEKAGQFTVLIRLLKSTQVANQINSQLN 66
           L++F  L        +PA++PGP P  +I KIL KAGQ++VL+RLL+STQV +QIN+QL 
Sbjct: 9   LLLFFFLSRALAQSSAPAKSPGPAPSTDIYKILIKAGQYSVLLRLLRSTQVGDQINNQLG 68

Query: 67  DSNSELTLFAPTDNAFSTLQSGTLNSLGDQEKVELLQFHMIPNFLSLSNFQTVSNPVITQ 126
            +NSELT FAPTDNAFS+L++GTLN L DQ+KV+LLQFH++P+F+S++NFQT+SNPV TQ
Sbjct: 69  STNSELTFFAPTDNAFSSLKTGTLNGLSDQQKVQLLQFHLVPSFISITNFQTLSNPVQTQ 128

Query: 127 AGDAYEFPLNVTTSGNSVNVSTGLVNTSISGTVYTDNQLAIYQVDSVLKPIGVFQP 183
           A D YE+PLN+TTSG+ VN+STG+VNT+ISGTVY+DNQLA+YQVD VL+P+G+F P
Sbjct: 129 ASDTYEYPLNITTSGSQVNISTGIVNTTISGTVYSDNQLAVYQVDKVLQPLGIFAP 184

The following BLAST results are available for this feature:

BLAST of Carg12314-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948355.1	8.6e-105	98.32	fasciclin-like arabinogalactan protein 12 [Cucurbita moschata]	[more]
XP_022998893.1	9.5e-104	97.90	fasciclin-like arabinogalactan protein 12 [Cucurbita maxima]	[more]
XP_023523295.1	4.7e-103	97.90	fasciclin-like arabinogalactan protein 12 [Cucurbita pepo subsp. pepo]	[more]
XP_022970427.1	1.5e-85	83.06	fasciclin-like arabinogalactan protein 12 [Cucurbita maxima]	[more]
XP_022964662.1	4.4e-85	83.06	fasciclin-like arabinogalactan protein 12 [Cucurbita moschata]	[more]

BLAST of Carg12314-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60490.1	9.0e-56	63.86	FASCICLIN-like arabinogalactan-protein 12	[more]
AT5G03170.1	4.2e-53	58.33	FASCICLIN-like arabinogalactan-protein 11	[more]
AT5G44130.1	4.2e-37	47.22	FASCICLIN-like arabinogalactan protein 13 precursor	[more]
AT1G03870.1	1.8e-35	46.59	FASCICLIN-like arabinoogalactan 9	[more]
AT2G20520.1	7.4e-34	46.77	FASCICLIN-like arabinogalactan 6	[more]

BLAST of Carg12314-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LEE9\|FLA12_ARATH	1.6e-54	63.86	Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
sp\|Q8LEJ6\|FLA11_ARATH	7.5e-52	58.33	Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
sp\|Q9FFH6\|FLA13_ARATH	7.6e-36	47.22	Fasciclin-like arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
sp\|Q9ZWA8\|FLA9_ARATH	3.2e-34	46.59	Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9...	[more]
sp\|Q9SIL7\|FLA6_ARATH	1.3e-32	46.77	Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6...	[more]

BLAST of Carg12314-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVA0\|A0A0A0LVA0_CUCSA	5.2e-82	82.57	Arabinogalactan protein 2 OS=Cucumis sativus OX=3659 GN=Csa_1G085380 PE=4 SV=1	[more]
tr\|A0A1S3CKI9\|A0A1S3CKI9_CUCME	2.9e-80	81.33	fasciclin-like arabinogalactan protein 12 OS=Cucumis melo OX=3656 GN=LOC10350184...	[more]
tr\|A0A2I4EJJ2\|A0A2I4EJJ2_9ROSI	3.9e-61	68.89	fasciclin-like arabinogalactan protein 12 OS=Juglans regia OX=51240 GN=LOC108990...	[more]
tr\|A0A2N9HWN0\|A0A2N9HWN0_FAGSY	1.5e-60	69.23	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44025 PE=4 SV=1	[more]
tr\|A0A2P5E4E1\|A0A2P5E4E1_9ROSA	1.6e-59	64.20	FAS1 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_234060...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR036378	FAS1_dom_sf
IPR000782	FAS1_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12314	Carg12314	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12314-RA.three_prime_UTR.1	Carg12314-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12314-RA.CDS.2	Carg12314-RA.CDS.2	CDS
Carg12314-RA.CDS.1	Carg12314-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12314-RA.exon.2	Carg12314-RA.exon.2	exon
Carg12314-RA.exon.1	Carg12314-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12314-RA	Carg12314-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 73..177 e-value: 3.6E-19 score: 79.7
IPR000782	FAS1 domain	PFAM	PF02469	Fasciclin	coord: 44..176 e-value: 6.1E-21 score: 74.9
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 32..174 score: 21.033
IPR036378	FAS1 domain superfamily	GENE3D	G3DSA:2.30.180.10		coord: 16..177 e-value: 1.8E-15 score: 59.3
IPR036378	FAS1 domain superfamily	SUPERFAMILY	SSF82153	FAS1 domain	coord: 25..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..193
None	No IPR available	PANTHER	PTHR32077	FAMILY NOT NAMED	coord: 19..228
None	No IPR available	PANTHER	PTHR32077:SF20	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12	coord: 19..228