Carg12299-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12299-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Enabled-like protein (DUF1635)
Location	Cucurbita_argyrosperma_scaffold_074 : 157100 .. 157964 (+)
Sequence length	750

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTGTTTCTCTGTTCCTCTGTTTCTCTGTTTCTTTCTCTAAACTCCATGGATAACCAACGCAGCCCTGTTTTAACTTGGGCTTATTTCTTGCAAACCAAGGTCAGTTTCATACCCATCTTCTCAAATTCTCCCTTGCTTTTTGTGGGTATTTCCCAGAATTTCGAAATTCGGTTCTGATTTTGATTTTGTGGTTCCTCTGTTTTTTCTTTGGCAGAACGTCGATGAACTCAGGCATTCTCTTCTGTGCACCACTCTGGAGCTTGAACAGACCAAAATTACAGTCCAAGAGGAGCTTAACAAGAAGGACGACCAGCTTTTACATCTCAAGAATCTTTTAAATCAAGCCATTAGAGAAAGAGACGAAGCCAATGAGAAATGCCAAACCCTTCTCCTCCAGAAACTGTTATTCCATCATCAACACCCACCGCCGCCGCCGCCGCCGAATCCACCGCCGCCTCTCTCTGCAATTTCCACCATCGACGACCAACCCAGAAAAGGATTCGATTCCCAAAACGCCTTCTCCTCCTCCGATTGCGATGAGAGTATCGTTTCATCTCCCGAAATCATCGACTGGGTCCCTGAAAAGCCATTGCCGGAAAAGGGTAAGCTCTTGCAGGCAGTGATGAACGCCGGTCCACTTCTACACACACTTCTCCTCGCTGGACCACTTCCTCAATGGAGACATCCACCACCGCCACTCGAATCGTTTCATTTGCCGCCGGTTACAATTCCACTTCCTCCGCTGCTACCGTCGCTCGCCGACACTAATTGTGGGATTGTCAACAAGAAGAGGGCTCTGTCTCTATGCGAGGATTCGGATTCTCAAACCGCAACCAAATTCCAGAGGCTTGTTTTCAACTGA

mRNA sequence

TCTCTGTTTCTCTGTTCCTCTGTTTCTCTGTTTCTTTCTCTAAACTCCATGGATAACCAACGCAGCCCTGTTTTAACTTGGGCTTATTTCTTGCAAACCAAGAACGTCGATGAACTCAGGCATTCTCTTCTGTGCACCACTCTGGAGCTTGAACAGACCAAAATTACAGTCCAAGAGGAGCTTAACAAGAAGGACGACCAGCTTTTACATCTCAAGAATCTTTTAAATCAAGCCATTAGAGAAAGAGACGAAGCCAATGAGAAATGCCAAACCCTTCTCCTCCAGAAACTGTTATTCCATCATCAACACCCACCGCCGCCGCCGCCGCCGAATCCACCGCCGCCTCTCTCTGCAATTTCCACCATCGACGACCAACCCAGAAAAGGATTCGATTCCCAAAACGCCTTCTCCTCCTCCGATTGCGATGAGAGTATCGTTTCATCTCCCGAAATCATCGACTGGGTCCCTGAAAAGCCATTGCCGGAAAAGGGTAAGCTCTTGCAGGCAGTGATGAACGCCGGTCCACTTCTACACACACTTCTCCTCGCTGGACCACTTCCTCAATGGAGACATCCACCACCGCCACTCGAATCGTTTCATTTGCCGCCGGTTACAATTCCACTTCCTCCGCTGCTACCGTCGCTCGCCGACACTAATTGTGGGATTGTCAACAAGAAGAGGGCTCTGTCTCTATGCGAGGATTCGGATTCTCAAACCGCAACCAAATTCCAGAGGCTTGTTTTCAACTGA

Coding sequence (CDS)

ATGGATAACCAACGCAGCCCTGTTTTAACTTGGGCTTATTTCTTGCAAACCAAGAACGTCGATGAACTCAGGCATTCTCTTCTGTGCACCACTCTGGAGCTTGAACAGACCAAAATTACAGTCCAAGAGGAGCTTAACAAGAAGGACGACCAGCTTTTACATCTCAAGAATCTTTTAAATCAAGCCATTAGAGAAAGAGACGAAGCCAATGAGAAATGCCAAACCCTTCTCCTCCAGAAACTGTTATTCCATCATCAACACCCACCGCCGCCGCCGCCGCCGAATCCACCGCCGCCTCTCTCTGCAATTTCCACCATCGACGACCAACCCAGAAAAGGATTCGATTCCCAAAACGCCTTCTCCTCCTCCGATTGCGATGAGAGTATCGTTTCATCTCCCGAAATCATCGACTGGGTCCCTGAAAAGCCATTGCCGGAAAAGGGTAAGCTCTTGCAGGCAGTGATGAACGCCGGTCCACTTCTACACACACTTCTCCTCGCTGGACCACTTCCTCAATGGAGACATCCACCACCGCCACTCGAATCGTTTCATTTGCCGCCGGTTACAATTCCACTTCCTCCGCTGCTACCGTCGCTCGCCGACACTAATTGTGGGATTGTCAACAAGAAGAGGGCTCTGTCTCTATGCGAGGATTCGGATTCTCAAACCGCAACCAAATTCCAGAGGCTTGTTTTCAACTGA

Protein sequence

MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLNQAIRERDEANEKCQTLLLQKLLFHHQHPPPPPPPNPPPPLSAISTIDDQPRKGFDSQNAFSSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNAGPLLHTLLLAGPLPQWRHPPPPLESFHLPPVTIPLPPLLPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN

Homology

[Close]

BLAST of Carg12299-RA vs. NCBI nr
Match: XP_022948979.1 (uncharacterized protein LOC111452463 [Cucurbita moschata])

HSP 1 Score: 320.9 bits (821), Expect = 3.7e-84
Identity = 230/233 (98.71%), Postives = 230/233 (98.71%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAIRERDEANEKCQTL XXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF
Sbjct: 61  QAIRERDEANEKCQTL-XXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120

Query: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXVTIPLPPLLPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN 234
           XXXXXXXVTIPLPP LPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN
Sbjct: 181 XXXXXXXVTIPLPPPLPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN 232

[Close]

BLAST of Carg12299-RA vs. NCBI nr
Match: XP_022998894.1 (uncharacterized protein LOC111493418 [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 5.3e-83
Identity = 227/233 (97.42%), Postives = 228/233 (97.85%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAIRERDEANEKCQTL XXXXXXXXXXXXXXXXXXXXXXXX ISTIDD PRKGFDSQNAF
Sbjct: 61  QAIRERDEANEKCQTL-XXXXXXXXXXXXXXXXXXXXXXXXAISTIDDYPRKGFDSQNAF 120

Query: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXVTIPLPPLLPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN 234
           XXXXXXXVTIPLPP LPSLAD+NCGIVNKKRALSLCEDSDSQTATKFQRLVFN
Sbjct: 181 XXXXXXXVTIPLPPPLPSLADSNCGIVNKKRALSLCEDSDSQTATKFQRLVFN 232

[Close]

BLAST of Carg12299-RA vs. NCBI nr
Match: XP_023525552.1 (uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 3.8e-81
Identity = 225/233 (96.57%), Postives = 226/233 (97.00%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN
Sbjct: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAIRERDEANEKCQTL XXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF
Sbjct: 61  QAIRERDEANEKCQTL-XXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120

Query: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSSPEIIDWVPEKPLPEKGKLLQAVMNAXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXVTIPLPPLLPSLADTNCGIVNKKRALSLCEDSDSQTATKFQRLVFN 234
           XXXXXX V IPLPP LPSLAD+NCGIVNKKRAL L EDSDSQTATKFQRLVFN
Sbjct: 181 XXXXXXPVRIPLPPPLPSLADSNCGIVNKKRALFLSEDSDSQTATKFQRLVFN 232

[Close]

BLAST of Carg12299-RA vs. NCBI nr
Match: XP_008463249.1 (PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 1.7e-57
Identity = 167/245 (68.16%), Postives = 178/245 (72.65%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAI+ERDEAN+KC+ L                          ISTIDD P K FDSQNAF
Sbjct: 61  QAIKERDEANKKCENL-------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAF 120

Query: 121 SSSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVS        PEI DW+ +KPLPEKGKLLQAVM XXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXVTIPLPPLLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQ 234
           XXXXXXXXXXXXXXV                  TNCGIVNKKRALSLCE+SDS  ATKFQ
Sbjct: 181 XXXXXXXXXXXXXXVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQ 232

[Close]

BLAST of Carg12299-RA vs. NCBI nr
Match: XP_004147279.1 (PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097650 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 1.0e-54
Identity = 161/245 (65.71%), Postives = 176/245 (71.84%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL ++DDQ+ HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAI+ERDEAN+KC+ L                          ISTIDD P K FDSQNAF
Sbjct: 61  QAIKERDEANKKCENL-------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAF 120

Query: 121 SSSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM XXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXVTIPLPPLLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQ 234
           XXXXXXXXXXXXXX                   T+CGIVNKKRALSLCE+SD+  ATKFQ
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQ 232

[Close]

BLAST of Carg12299-RA vs. TAIR10
Match: AT5G22930.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-25
Identity = 117/253 (46.25%), Postives = 150/253 (59.29%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQ + +L W Y+   K  +E+R SLL TTLEL+QTK+   EE+ K+D+QL+HLK++L 
Sbjct: 1   MDNQSNALLGWPYYSHAKTTEEIRQSLLYTTLELDQTKMFAYEEIRKRDEQLIHLKDILT 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDD---QPRKGFDSQ 120
           + I+ERDEA EKCQ L                           S+I+D   QP++   S 
Sbjct: 61  KTIKERDEALEKCQRL-------MFDSHSLQQQKHMTPPLSGASSIEDEQVQPQQ-LRSN 120

Query: 121 NAFSSSDCDESI-----------------VSSPEII--DWVPEKPLPEKGKLLQAVMNXX 180
            +FSSSDC+ESI                 VS  EII    + +KPLPEKGKLLQAV+ XX
Sbjct: 121 KSFSSSDCEESIMSPTDHIMNPPPCQLEEVSGTEIIMDPLLQDKPLPEKGKLLQAVIXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLPPLLPSLADTNCGIVNKKRALSLCED 232
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX T+  P     + +  CG  N+KR  S    
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVQCP-----IVNNGCGKFNRKRVFS---- 236

[Close]

BLAST of Carg12299-RA vs. TAIR10
Match: AT3G44940.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 112.1 bits (279), Expect = 4.7e-25
Identity = 141/256 (55.08%), Postives = 179/256 (69.92%), Query Frame = 0


Query: 3   NQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLNQA 62
           +Q + +L+W YF   K  +ELR +L+ TT+ELEQTK+   EEL K+D+QL+HL+++L + 
Sbjct: 2   DQSNSLLSWTYFSHGKTTEELRQTLVYTTMELEQTKLVAHEELRKRDEQLIHLEDVLTKT 61

Query: 63  IRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDD------QPRK-GFD 122
           ++ERDEA EK   LXXXXXXXXXXXXXXXXXXXXXXXXXX            QP++   +
Sbjct: 62  LKERDEALEKYNHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQPQQPQLN 121

Query: 123 SQNAFSSSDCDESIVSSPEIIDWV------------------PEKPLPEKGKLLQAVMNX 182
           S  +FSSSD +ESI+ SP +ID V                  P+KPLPEKGKLLQAV+ X
Sbjct: 122 SNKSFSSSDTEESIM-SPSVIDPVTMNQQIEVSGDEMLATLLPDKPLPEKGKLLQAVIXX 181

Query: 183 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLPPLLPSLADTNCGIVNKKRALSLCE 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIP    LP   +  CG  NKKRA S+ +
Sbjct: 182 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIP----LPQFQNNGCGNSNKKRAFSISD 241

[Close]

BLAST of Carg12299-RA vs. TAIR10
Match: AT2G28140.1 (Protein of unknown function (DUF1635))

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-18
Identity = 87/239 (36.40%), Postives = 124/239 (51.88%), Query Frame = 0


Query: 4   QRSPVLTWAYFLQ--TKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLNQ 63
           Q++ +L+W++  Q   K ++ELRHSLL TT+ELEQT++   EEL  KDDQ++ LK+LLN+
Sbjct: 5   QQNYLLSWSHQNQCGIKTIEELRHSLLHTTMELEQTRMVASEELIAKDDQIMQLKDLLNK 64

Query: 64  AIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAFS 123
           AI+E+DEA E+ + +                            T ++Q      + N F 
Sbjct: 65  AIKEKDEAQERYKRILLDQNFLLQH-----------------QTDEEQD----PNINGFH 124

Query: 124 SSDCDESIVSS----PEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXXXXXX 183
           SSD +ESIVSS     EI    PE  LPEKGKLL+AV+      XXXXXXX         
Sbjct: 125 SSDGEESIVSSFEPPVEIELDFPEMTLPEKGKLLKAVVKAGPLLXXXXXXXQLPQWRHPP 184

Query: 184 XXXXXXXXXXVTIPLPPLL----PSLADTNCG-IVNKKRALSLCEDSDSQTATKFQRLV 232
                      +  +PP++      L+  +CG  +N+KR        DS+  TK+QRL+
Sbjct: 185 PQLE-------SFEIPPVIIAEGSPLSQDSCGNNLNRKRV-----HCDSKRETKYQRLL 210

[Close]

BLAST of Carg12299-RA vs. TrEMBL
Match: tr|A0A1S3CKC5|A0A1S3CKC5_CUCME (arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 167/245 (68.16%), Postives = 178/245 (72.65%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL K+DDQ+LHLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKKRDDQVLHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAI+ERDEAN+KC+ L                          ISTIDD P K FDSQNAF
Sbjct: 61  QAIKERDEANKKCENL-------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAF 120

Query: 121 SSSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVS        PEI DW+ +KPLPEKGKLLQAVM XXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSVSSPVPPPPEISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXVTIPLPPLLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQ 234
           XXXXXXXXXXXXXXV                  TNCGIVNKKRALSLCE+SDS  ATKFQ
Sbjct: 181 XXXXXXXXXXXXXXVAXXXXXXXXXXXXXXSEATNCGIVNKKRALSLCEESDSLPATKFQ 232

[Close]

BLAST of Carg12299-RA vs. TrEMBL
Match: tr|A0A0A0LS86|A0A0A0LS86_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 161/245 (65.71%), Postives = 176/245 (71.84%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDN RSPV TWAYFLQ  N+DELRHSLLCTTLELEQT+I VQEEL ++DDQ+ HLKNLLN
Sbjct: 1   MDNHRSPVFTWAYFLQANNIDELRHSLLCTTLELEQTRIAVQEELKRRDDQVFHLKNLLN 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           QAI+ERDEAN+KC+ L                          ISTIDD P K FDSQNAF
Sbjct: 61  QAIKERDEANKKCENL-------------LLHKLFFNQHSAPISTIDDDPTKAFDSQNAF 120

Query: 121 SSSDCDESIVS-------SPEIIDWVPEKPLPEKGKLLQAVMNXXXXXXXXXXXXXXXXX 180
           SSSDCDESIVS        P+I DW+ +KPLPEKGKLLQAVM XXXXXXXXXXXXXXXXX
Sbjct: 121 SSSDCDESIVSVSSPVPPPPDISDWISDKPLPEKGKLLQAVMXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXVTIPLPPLLPSLAD-----TNCGIVNKKRALSLCEDSDSQTATKFQ 234
           XXXXXXXXXXXXXX                   T+CGIVNKKRALSLCE+SD+  ATKFQ
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSEATHCGIVNKKRALSLCEESDTLPATKFQ 232

[Close]

BLAST of Carg12299-RA vs. TrEMBL
Match: tr|A0A1Q3BZW3|A0A1Q3BZW3_CEPFO (DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16938 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.3e-47
Identity = 171/263 (65.02%), Postives = 197/263 (74.90%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQRSP+L+WAY+ Q K+++ELRHSLL TTLELEQTK+ VQEEL K+DD+ +HLK+LL+
Sbjct: 1   MDNQRSPLLSWAYYFQGKSMEELRHSLLYTTLELEQTKVAVQEELRKRDDEFIHLKDLLD 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           +AI +RDEA EKCQ L   XXXXXXXXXXXXXXXXXXX    IS+I+D+PR+GFDS N F
Sbjct: 61  KAISQRDEAQEKCQRL---XXXXXXXXXXXXXXXXXXXPLSGISSIEDEPRRGFDSNNGF 120

Query: 121 SSSDCDESIVSSP------------------------EIIDWVPEKPLPEKGKLLQAVMN 180
           SSSDC+ESIVSSP                        EIID VP+KPLPEKGKLLQAVM 
Sbjct: 121 SSSDCEESIVSSPVIDPIXXXXXXXXXXXXXXXXMPQEIIDLVPDKPLPEKGKLLQAVMX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLPP------LLPSLADTNCGIVNKK 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   P PP       L ++   NCG VN+K
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPPQLLQQDSLMNIGLNNCGKVNRK 240

[Close]

BLAST of Carg12299-RA vs. TrEMBL
Match: tr|A0A2I4EHV2|A0A2I4EHV2_9ROSI (proline-rich receptor-like protein kinase PERK10 OS=Juglans regia OX=51240 GN=LOC108989716 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 145/264 (54.92%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MD+QR+P+L+WAY+ Q K ++ELR SLL TTLELEQT++  QEEL K+DDQLLHLK+LL+
Sbjct: 1   MDDQRNPLLSWAYYYQGKTMEELRTSLLYTTLELEQTRLAAQEELRKRDDQLLHLKDLLS 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           +AIRERDEA EKCQ L                          IS+I+D+PR+G DS N F
Sbjct: 61  KAIRERDEAQEKCQRL-------LLEKILFQQQHQQTAPLSGISSIEDEPRRGIDSNNGF 120

Query: 121 SSSDCDESIVSSPEI---------------------IDWVPEKPLPEKGKLLQAVMNXXX 180
           SSSDC+ESIVSSP +                     I+  PEKPLPEKGKLLQAVM XXX
Sbjct: 121 SSSDCEESIVSSPIVDPIPPSRLPPPPATQSVPQTTIELAPEKPLPEKGKLLQAVMXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVTIPLPPLLPSL------------ADTNCGIV 232
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX     PP  P                T+CGI 
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPPPQPEFRQDSLTNIISCNTPTSCGI- 240

[Close]

BLAST of Carg12299-RA vs. TrEMBL
Match: tr|A0A2P4IZ76|A0A2P4IZ76_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_58873 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.8e-40
Identity = 157/269 (58.36%), Postives = 179/269 (66.54%), Query Frame = 0


Query: 1   MDNQRSPVLTWAYFLQTKNVDELRHSLLCTTLELEQTKITVQEELNKKDDQLLHLKNLLN 60
           MDNQRSP+L   Y+ Q K ++ELRHSLL TTLELEQTK+ VQEEL K+DDQLLHLK+LL+
Sbjct: 1   MDNQRSPLLNLVYYCQGKTMEELRHSLLFTTLELEQTKLAVQEELRKRDDQLLHLKDLLD 60

Query: 61  QAIRERDEANEKCQTLXXXXXXXXXXXXXXXXXXXXXXXXXXISTIDDQPRKGFDSQNAF 120
           + IRE+DEA EKC  L            XXXXXXXX      IS+I+D+PR+G DS N F
Sbjct: 61  KTIREKDEAQEKCHRL---LLEKLLIQQXXXXXXXXAAPLSGISSIEDEPRRGIDSNNGF 120

Query: 121 SSSDCDESIVSSPEI---------------IDWVPEKPLPEKGKLLQAVMNXXXXXXXXX 180
           SSSDC+ESIVSSP +               ++ VPEKPLPEKGKLLQAVM XXXXXXXXX
Sbjct: 121 SSSDCEESIVSSPIVDPTPPPQLPAPSQSSLELVPEKPLPEKGKLLQAVMXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXVTIPLPPLL--------------PSLAD-------TNC 234
           XXXXXXXXXXXXXXXXXXXXXX TIP                    SL +       TNC
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXTIPSAXXXXXXXXXXXXXXLHQDSLFNINGCNSLTNC 240

The following BLAST results are available for this feature:

BLAST of Carg12299-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948979.1	3.7e-84	98.71	uncharacterized protein LOC111452463 [Cucurbita moschata]	[more]
XP_022998894.1	5.3e-83	97.42	uncharacterized protein LOC111493418 [Cucurbita maxima]	[more]
XP_023525552.1	3.8e-81	96.57	uncharacterized protein LOC111789130 [Cucurbita pepo subsp. pepo]	[more]
XP_008463249.1	1.7e-57	68.16	PREDICTED: arp2/3 complex-activating protein rickA [Cucumis melo]	[more]
XP_004147279.1	1.0e-54	65.71	PREDICTED: formin-3 [Cucumis sativus] >KGN64785.1 hypothetical protein Csa_1G097...	[more]

BLAST of Carg12299-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22930.1	2.8e-25	46.25	Protein of unknown function (DUF1635)	[more]
AT3G44940.1	4.7e-25	55.08	Protein of unknown function (DUF1635)	[more]
AT2G28140.1	3.3e-18	36.40	Protein of unknown function (DUF1635)	[more]

BLAST of Carg12299-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12299-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKC5\|A0A1S3CKC5_CUCME	1.1e-57	68.16	arp2/3 complex-activating protein rickA OS=Cucumis melo OX=3656 GN=LOC103501451 ...	[more]
tr\|A0A0A0LS86\|A0A0A0LS86_CUCSA	6.9e-55	65.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097650 PE=4 SV=1	[more]
tr\|A0A1Q3BZW3\|A0A1Q3BZW3_CEPFO	5.3e-47	65.02	DUF1635 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_...	[more]
tr\|A0A2I4EHV2\|A0A2I4EHV2_9ROSI	4.8e-40	54.92	proline-rich receptor-like protein kinase PERK10 OS=Juglans regia OX=51240 GN=LO...	[more]
tr\|A0A2P4IZ76\|A0A2P4IZ76_QUESU	4.8e-40	58.36	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_58873 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12299	Carg12299	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12299-RA.exon.1	Carg12299-RA.exon.1	exon
Carg12299-RA.exon.2	Carg12299-RA.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12299-RA.five_prime_UTR.1	Carg12299-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12299-RA.CDS.1	Carg12299-RA.CDS.1	CDS
Carg12299-RA.CDS.2	Carg12299-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12299-RA	Carg12299-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 45..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..103
None	No IPR available	PANTHER	PTHR33431:SF3	SUBFAMILY NOT NAMED	coord: 1..231
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 18..230 e-value: 8.5E-71 score: 238.3
IPR012862	Protein of unknown function DUF1635	PANTHER	PTHR33431	FAMILY NOT NAMED	coord: 1..231