Carg12297-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12297-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chaperone DnaJ
Location	Cucurbita_argyrosperma_scaffold_074 : 142676 .. 145447 (+)
Sequence length	703

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAATAGCGGAACAAGAAGCAGGTAGAGAATTTTCTTTGTTCTGCGCGAAAGAACTCACAATTCCTTCTCAATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGAGTACGCTTGAATTCTGTTTGCTTTGAATTTCGTTCCATTTCTCTGTTCCCCATGTTGCCAGATTGGGATTTTCCATTGATATCTGTTCATGTGGGTTCTTAGAGCTCGAACTTTCTTTCGCCATTTCTTTTCTTGCGATTGCCCTTTCGTTGTTTTCGGTCTTTCTGCAACAGGGTTTTGGTGGGTTTATCCATCAGTGTTGGGATTTTCCATGCCGGCGTGTTGTTTGACAAAAGTCGTTTGCCATAATTTGGTTGTTTTTGAAAGGTTTGAGGCCTGAGAGACTAGATTTGTGGGTTTGCTATGATTCATGTGATTGTTTGGTTGCTTACTCATCTTTAGTAATGGTTAATTAAGATGAATCTTTGGTTGGCGAGCATTGCTTAGTTGTTTGGACGGGATGGATTAGGACTATTGAGTGTTATGACGGGTGACAACAAAGGGGTTGTATACCATATTGCTGAAACCAAGGAGGCTTATGATTAAGGTCTTTTAGTTCATGTAAATTTGAGAAATGTAGGTCACGAAGTAGTGCAATGTACCACTATTGAAGACGTTGGTTTTGTATTGGGGTGGTTTAAGGGCACTCTGTAGCCTCAAGGTACCGATTGTCACAAAGAGGAGCCCTTAACATGCCTTGAGAAGAAATTTTGTCAACGATATCGTGCCCCTGGAGCGATATTGTGAGATCTCACATTAGTTGGAGAGAAGAACGAAACATTTTTTGTAAAGGTGTGGAAACCTCTCCCTAGCATATGCATTTTAAAAACCTTGAGGGGAAGCCTGAAAAGAACAATATATGCTAGCGGTGGGCTTGAGTCGTTACAAATGGTATAAGAACCAGATACCAGGCGGTGTGCTAGCGAGGACACTGGGCCGTGAAAGGATGTGAATTGTGAGATCCCACATCGATTGAAGAGGCGAACGAGTCTAGTGTTCGGGGTGGATTGTGAGATCCCACGTCGGTTGGAGAAGGGAACGAAACATTCTTTATAAGGGTGTGGAAACGTCTCCCTAGCAAATGTGTTTTAAAAACCTTGAGAGGAAGCCCTTAAGCAATCGTGACATGTTATTTCCGCTAGCTATTTGACTGTGATTGTTTACACAACTGTTTGATGCAACTCTTAGCAGAAAAGTGGTGTCAAAGCTGTTGATCATTGTTCTTTGCCTAACATTACAATGTCTTGTTAAAGCTCTACATTATGAATTTATGATGTGACATGTAAACTTTCTGCTGATTGAAATTCTGTTATTGTGAAGTAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGGTTGGCTTCAGATCTAAAACACCATTTATATGCCATTATCATATAGAATCAAGTGTTTGAAACCTGCATCTTGTCAGTTACTACACCGTTTTTGTTTTTGTGTCGTTACTGAAAAAGCACGGAAGCTTTAGTTTGGCTAACATGCTCGTGTCTAACACATATAGACACTTGGATGCTTGTTAGACATGTGCTAGATACTTGATAGCACAATAAACGTGAGACCCCACATTGATTAGAAAGGGGAACGAGTGTCAGCCAGAACGTTGGGCGGTGGGATTGTGGGATCTCACATCGGTTGGAGAGGAGAACAAAATATTCTTTATAAGGGTGTGGAAACCCTCCTTAGTAGACGCGTTTTTAAAACCTCAAGGGAAACCTCAAAGAGGACAATATCTGTTACTAATGAACTTGAGCTGTTACAAATGGTATCTGAGTCAATCACCTGGTCGGAGTAGAGCTAGACCCTCTCTATAGTAGATGTGTTTTGAAAACCGTGAGGTTGACAGTGATATGTAACGAGCCAAAACAGACAATATATACTAGCGGTGGGCTTGAGCTGTTATAATAAATACGTTAGACACATGCATAGGTTACTTATTTCGAATTCAAAACTTGTTCTTATCGTATTTGTATCATGTCATATCGATGTCTCGTGTCCATATCCTTGCTTCTTTTATTCGTATCTTTGTATGCAACTCTTGTGCTGATTTTGTCCATAAAATTCAGATTCCTTTGAGACCATGTGAAGACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGTACAAATTTCTTGTCTTGTCTCTCTTTTTCTTGTTAGAAACCTTCAACTTTCAACTTATATCTGATCTTAATCCTTTCTCAGGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAGTCTTACAACCCGACAAACTCCTTATATCTCCGCATATTTTTCTGTCTCGTAAATTTCTCTCATTAGGAGTGTTCAAAGAATTCGATGACTCACAAAATTTAATCAACCCAATCTAATTCGTATGACTCGGATGGGG

mRNA sequence

AAGAATAGCGGAACAAGAAGCAGGTAGAGAATTTTCTTTGTTCTGCGCGAAAGAACTCACAATTCCTTCTCAATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGATAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGATTCCTTTGAGACCATGTGAAGACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAGTCTTACAACCCGACAAACTCCTTATATCTCCGCATATTTTTCTGTCTCGTAAATTTCTCTCATTAGGAGTGTTCAAAGAATTCGATGACTCACAAAATTTAATCAACCCAATCTAATTCGTATGACTCGGATGGGG

Coding sequence (CDS)

ATGGAGCTGACTCTGCCTACACCCTTGTTTGCCTCCTCCTCCAAGATAATTAGGGATCCTAAGCTAATCAACCATGGACTTCGGTTGTTGGACACCAATCCTATTTCAGCCGATTTGAAGCTACAAGGAGGGAGAAGAACACTGCCTATAGCTTCTTCCCTACCTGAAACAGCTGCTTCTGTGGCCATTGCTGCTACAGTTGTAGGTGCAGCAGCCACCTTCCTTTCCAGAAGAAACAAAGATTCTGAGGCGAAGGAGATTCCTTTGAGACCATGTGAAGACTGTGGAGGTTCAGGCCTGTGTTCTGAATGCAAAGGTGAAGGGTTTGTGCTGAAGAAACTGTCGGATGAAAATGCAGAGCGGGCACGGTTGGCTGCGAAGAACATGGCCACTCGGTTCACCGCAGCGCTTCCTAAAAAATGGAGCTACTGTTCCAAGTGTTCTTCTGCTCGTTCTTGTAGTACTTGTGGTGGCACGGGGACGTTCAACTCTTAG

Protein sequence

MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS

Homology

[Close]

BLAST of Carg12297-RA vs. NCBI nr
Match: XP_022948420.1 (uncharacterized protein LOC111452109 [Cucurbita moschata])

HSP 1 Score: 320.1 bits (819), Expect = 4.4e-84
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of Carg12297-RA vs. NCBI nr
Match: XP_023525360.1 (uncharacterized protein LOC111788983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.3 bits (804), Expect = 2.4e-82
Identity = 161/164 (98.17%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of Carg12297-RA vs. NCBI nr
Match: XP_022998903.1 (uncharacterized protein LOC111493423 [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 6.0e-81
Identity = 159/164 (96.95%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLFASSSKIIRDPK INHGLRL D+NPISADLKLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFASSSKIIRDPKPINHGLRLFDSNPISADLKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNKDSEA+EIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAEEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 164

[Close]

BLAST of Carg12297-RA vs. NCBI nr
Match: XP_023522425.1 (uncharacterized protein LOC111786358, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 7.1e-74
Identity = 145/150 (96.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 15  KIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF 74
           ++IRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF
Sbjct: 2   EVIRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATF 61

Query: 75  LSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFT 134
           LSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFT
Sbjct: 62  LSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFT 121

Query: 135 AALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           AALPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 122 AALPKKWSYCSKCSSARSCSTCGGTGTFNS 151

[Close]

BLAST of Carg12297-RA vs. NCBI nr
Match: XP_023522036.1 (uncharacterized protein LOC111785907, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 2.1e-73
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 17  IRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS 76
           IRDPK INHGLRL D+NPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS
Sbjct: 1   IRDPKPINHGLRLFDSNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVGAAATFLS 60

Query: 77  RRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFTAA 136
           RRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFTAA
Sbjct: 61  RRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKNMATRFTAA 120

Query: 137 LPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           LPKKWSYCSKCSSARSCSTCGGTGTFNS
Sbjct: 121 LPKKWSYCSKCSSARSCSTCGGTGTFNS 148

[Close]

BLAST of Carg12297-RA vs. TAIR10
Match: AT3G45050.2 (unknown protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-39
Identity = 88/152 (57.89%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 10  FASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAASVAIAATVVG 69
           F SS   ++D + +N  L+             Q  +R+  +  +L ETA S+AIAATVVG
Sbjct: 13  FPSSVSSVKDVRFLNLDLK----------SSHQRAKRSSTVVPALAETAVSIAIAATVVG 72

Query: 70  AAATFLSRR-NKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAERARLAAKN 129
            AAT L RR NK SE  E  ++ CE C GSG+C ECKGEGFVLKKLSD NAE+ARLAAKN
Sbjct: 73  TAATILVRRNNKASEEAEASMKECEACLGSGICPECKGEGFVLKKLSDANAEKARLAAKN 132

Query: 130 MATRFTAALPKKWSYCSKCSSARSCSTCGGTG 161
           MATR+TA LPKKWSYC+KCSS RSC  CGG+G
Sbjct: 133 MATRYTAGLPKKWSYCTKCSSTRSCMICGGSG 154

[Close]

BLAST of Carg12297-RA vs. TrEMBL
Match: tr|A0A0A0LVE3|A0A0A0LVE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097700 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.8e-71
Identity = 143/164 (87.20%), Postives = 152/164 (92.68%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLF S  KI+R+ K  N+GL LLD+NP+SAD+KLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFVSIPKIVRNSKPNNNGLCLLDSNPLSADVKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNK+SEA E+PL  CEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKNSEAVEVPLITCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT NS
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLNS 164

[Close]

BLAST of Carg12297-RA vs. TrEMBL
Match: tr|A0A1S3CIP4|A0A1S3CIP4_CUCME (uncharacterized protein LOC103501412 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501412 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.1e-70
Identity = 142/164 (86.59%), Postives = 150/164 (91.46%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLF S  KI+R  K  NHGL LL++ P+SAD+KLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFVSIPKIVRSSKPNNHGLCLLNSIPLSADMKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNKDSEA E+PL  CEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAVEVPLITCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT +S
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLSS 164

[Close]

BLAST of Carg12297-RA vs. TrEMBL
Match: tr|A0A1S3CJ25|A0A1S3CJ25_CUCME (uncharacterized protein LOC103501412 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501412 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 2.3e-68
Identity = 141/170 (82.94%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MELTLPTPLF------ASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSL 60
           MELTLPTPLF       SS +++R  K  NHGL LL++ P+SAD+KLQGGRRTL IASSL
Sbjct: 1   MELTLPTPLFVSIPKKCSSCEVVRSSKPNNHGLCLLNSIPLSADMKLQGGRRTLTIASSL 60

Query: 61  PETAASVAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKL 120
           PETAASVAIAATVVGAAATFLSRRNKDSEA E+PL  CEDCGGSGLCSECKGEGFVLKKL
Sbjct: 61  PETAASVAIAATVVGAAATFLSRRNKDSEAVEVPLITCEDCGGSGLCSECKGEGFVLKKL 120

Query: 121 SDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           SDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT +S
Sbjct: 121 SDENAERARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLSS 170

[Close]

BLAST of Carg12297-RA vs. TrEMBL
Match: tr|A0A1S3CJ40|A0A1S3CJ40_CUCME (uncharacterized protein LOC103501412 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501412 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.9e-60
Identity = 130/164 (79.27%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           MELTLPTPLF S  K                      D+KLQGGRRTL IASSLPETAAS
Sbjct: 1   MELTLPTPLFVSIPK---------------------TDMKLQGGRRTLTIASSLPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFLSRRNKDSEA E+PL  CEDCGGSGLCSECKGEGFVLKKLSDENAE
Sbjct: 61  VAIAATVVGAAATFLSRRNKDSEAVEVPLITCEDCGGSGLCSECKGEGFVLKKLSDENAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTGTFNS 165
           RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGG+GT +S
Sbjct: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGSGTLSS 143

[Close]

BLAST of Carg12297-RA vs. TrEMBL
Match: tr|A0A2I4EK64|A0A2I4EK64_9ROSI (uncharacterized protein LOC108990324 OS=Juglans regia OX=51240 GN=LOC108990324 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.7e-47
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0


Query: 1   MELTLPTPLFASSSKIIRDPKLINHGLRLLDTNPISADLKLQGGRRTLPIASSLPETAAS 60
           ME  L    F S SK IRD K         ++ P+      + GR+TL ++S+LPETAAS
Sbjct: 1   MEHALHALSFPSFSKTIRDFK--------HNSCPLRDGKSQEPGRKTLTVSSALPETAAS 60

Query: 61  VAIAATVVGAAATFLSRRNKDSEAKEIPLRPCEDCGGSGLCSECKGEGFVLKKLSDENAE 120
           VAIAATVVGAAATFL RR K SE  EIP++ CEDCGGSG+CSECKGEGFVLKKLS+++AE
Sbjct: 61  VAIAATVVGAAATFLVRRTKASETPEIPMKVCEDCGGSGICSECKGEGFVLKKLSEDSAE 120

Query: 121 RARLAAKNMATRFTAALPKKWSYCSKCSSARSCSTCGGTG 161
           RARLAAKNMATR+TA LPKKWSYC+KCSSARSCSTC G G
Sbjct: 121 RARLAAKNMATRYTAGLPKKWSYCTKCSSARSCSTCAGRG 152

The following BLAST results are available for this feature:

BLAST of Carg12297-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948420.1	4.4e-84	100.00	uncharacterized protein LOC111452109 [Cucurbita moschata]	[more]
XP_023525360.1	2.4e-82	98.17	uncharacterized protein LOC111788983 [Cucurbita pepo subsp. pepo]	[more]
XP_022998903.1	6.0e-81	96.95	uncharacterized protein LOC111493423 [Cucurbita maxima]	[more]
XP_023522425.1	7.1e-74	96.67	uncharacterized protein LOC111786358, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023522036.1	2.1e-73	97.97	uncharacterized protein LOC111785907, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12297-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G45050.2	1.4e-39	57.89	unknown protein	[more]

BLAST of Carg12297-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12297-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVE3\|A0A0A0LVE3_CUCSA	4.8e-71	87.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097700 PE=4 SV=1	[more]
tr\|A0A1S3CIP4\|A0A1S3CIP4_CUCME	3.1e-70	86.59	uncharacterized protein LOC103501412 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CJ25\|A0A1S3CJ25_CUCME	2.3e-68	82.94	uncharacterized protein LOC103501412 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CJ40\|A0A1S3CJ40_CUCME	3.9e-60	79.27	uncharacterized protein LOC103501412 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2I4EK64\|A0A2I4EK64_9ROSI	3.7e-47	66.88	uncharacterized protein LOC108990324 OS=Juglans regia OX=51240 GN=LOC108990324 P...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12297	Carg12297	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12297-RA	Carg12297-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12297-RA.exon.1	Carg12297-RA.exon.1	exon
Carg12297-RA.exon.2	Carg12297-RA.exon.2	exon
Carg12297-RA.exon.3	Carg12297-RA.exon.3	exon
Carg12297-RA.exon.4	Carg12297-RA.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12297-RA.five_prime_UTR.1	Carg12297-RA.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12297-RA.CDS.1	Carg12297-RA.CDS.1	CDS
Carg12297-RA.CDS.2	Carg12297-RA.CDS.2	CDS
Carg12297-RA.CDS.3	Carg12297-RA.CDS.3	CDS
Carg12297-RA.CDS.4	Carg12297-RA.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12297-RA.three_prime_UTR.1	Carg12297-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37230	FAMILY NOT NAMED	coord: 34..162