Carg11227-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11227-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA binding family protein, putative
Location	Cucurbita_argyrosperma_scaffold_013 : 743497 .. 751718 (-)
Sequence length	2719

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCCATTTTTGTTCTGTTCATCTCAAATCTCTCTCCCTCAGCCATGTTCTCTGATGAAATCCGCTCTCCGTTGCGTTTCTGCGTTTAATTTCCAGCGGCTTCCTTGTTAATTGGTTTTCTCTGTCCAGTTTTCACAGGATCGGTGGAACCGGCTAGGGTTCATGGAAGCTGCAATTCGGGAGTTTAATATTTGAGGGTTTGAATATCGATTGAACTCCTGTGTTAGTGTTATTAAAATTAAGCGTTCGGGGTTCTCGATTGTGAAGCTTCGTGATAGAACGCATCCGAGATGGGTAGTGATGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGTACGGACTACCCTGGCCTTTTAACATTCATGTGCCTGGTTTTTGCGAAGCAATGTCATTGTCGGTTTTGTGACGAGTCTGCCCGGGAGTTTTAGAAATTTTTTTAGGTTATTCATGTGGAGGTCATTTTCTCCTTCATGACTGGTTGTTGGGGAATTTGTTTGGTTGAAGAAATGGAAATGTAGGATTCGCGGGTTGTTATATATTTGTAGAGGCAAGAAATTGAGATTGAGCTAATTGGACGAAAATGTTTTGTAATCTTTGCATTAGATTTCTTTGAGGGATTTATTGAGAATATCATTCTGAAAAAAGATATTGGAATACTCGTAATATCTTCCTTGAGGGTGTTTCAAGAGTTCTAAAAGGATTTAGTAGTGGTGAATCCATCAGGTTTTTGAGCTTTCTTACTTCCCAAATGTGAAATAGCTTAAATAATTTTGTCTACTCGAAATTTAGCCTCGATCTAAAGCAATCCTTGGGTGTCTCTAAGGTTGAGAACCGACCCAAACTGTTTGATATAAACTTTGCCACCTGTTATTTGAGTATGGATCCTGGATAAAGCAAGAAACGCCTTTTGAATATGTGTGGAAAGAGCTAGTGTTATAATATTCTTCTCTTCTTGACATGTCTCCTGCGAGCTATGTGGATTGTATCTTCATGTCCAAACAAATCTCTTTCCAAAATAGATCATTGAGTTGGGATTCGAGATTAATTTGAGAAGACCGTTTGCTTCAAGCAGGGAAAAGTTTTGCAAGTGGTCTAGAGCTTTGGGATCATCAAGAATTTCAGCTTTTGAAGGTTCCATCTTTTCAGCAAGCTTTTCGTTTTTTTAAATTTGCAAATCAGACCATACCTTAGCCAACCTTCAAGATTAGAGCAGTTTTCCACCAACTTTTGTAAGTCTTTGGGAAATTGCTGTGCTTGAGCCTCATATTTATGAATTTAAAAAGGGCAGGATCCCGTTTGATACCAGAAGATTTCTTGAAGGGTCATTTAGCGGTTGGAGGTAGGCATTTCAAGGTGTTTTAATTCTTCGGAGATTTAAGCGTAACCAATCATGGGAGACTAAAAATCTATCAATGAGGGACCAATCAGTCCATCTTGGATCAAGTTAACTTGGCTCTGTTATGAGGGAGGGACATCAATGAAGGAGAGGTTGTCAACAACCTCGTCAAAGAGCTTCATGCTTTTCGCAGTGAATTTCTCCCAGCTTCATTAAAAGGTATTGAAGCATCTTCCTTCTCAACTACTCAATTAGCCATAACAGAGGCACCCAAGATTTTCCAATTTCCTAAAATTGAAACCTGGATATAGACATCTGGAGAGGGGCCATAAATATTGAAAAGCCTGAAAAGAAGAAAATTAGCAGAAGAGAAATTGAACCTTTAAGAGAAAGGTTGCAGCCATAACAAAGGCGCCCAAGATTGTCCAATTCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTGAGATGGACATCTTGAGAGGGTCCGTAGATACTGAAAATTTGAAGAAGAAAAAGAAGTCCAACAAACATCTATGAGGTCTAGTTAGATTTGATAATTTTTTGGTTTGTACAAGGAAGCTATTAAAGAGTCAAGGTTTCAACTCTTAAGCTTCGCATGGAGGAGACCGCAAGTGATGTAAAGGCGGGTAATATAATTGTTTAATCATAGGAGTGACTAGGACATGATTCTTTGGGGCCTAAGGAATGGGTATTTTGTTATTGTTCGGTTATTTCTGTTTGGGGTTTGCTGTATTAACTGTTGTTAGCTGTGGGGAAAGTCATATTTCTCTTGAAACTCCCTTGGCTTTGCCAAAATAGTTAATTCATAATTCAAGATCCATCAGTATCAGTGTATCATATAAAGGGGCAACTTGAATAACACTTAGATCACAGCGAGATTTGATATAACTTCTACGACAGCCATGAGAACCAATTTTTGAAGTTTTAGTGGTAGAATTGAGAAACCTCCACATATTTAAAACGCCTACAGAGGAATCAAGACAACATTTGTTGAAGGGCACATTTATAATCTTTATCCATCCTTCATATGAACCAGATGACTAAATTCTTGGAATGCTGGAGTCCAATTTTCTTAGGCAAACAAGTCTAGCTTGGTCAATCCTTATGCACCCGAGGATGGCTCTATTACTTATACATGGTTGGGGCTAATTAGCTTTTGGAGAGACCCGGTTGTTCTTTAAGGGTTTCTTCAAACCACACTAGAGGCATTCATCTTGATAAGAAGATGTCCTCTTTAAGAAAGCATTAACCATGTTTTAGTAATCTTGCTATTTTTTTTACCTTTCTATCATCTCAATGCTATTCTTTCTTTACATTCTTTTGAAGATTACCTTTCCATGTGAACTCATTCTTCCAATTTCCATGGTTTGGAAGAGCAAAATCTTGAAGAACGCCAAATTTTATGTGTGGCAGATCCTTGTTAGCAGGGTTAATACATTGGATTGTGTTCTTAGGTTCGTGTCTAAGGTGATCAGACCCTTGTCTTACATTCTTTGTAGGCGAGTAGCCGAGGATCTAGATCATCTCATGTGGTCATGTCAGTTTGCTAGATCGGTGTAGAGCAACCTTTTTGAGTCCTCCTTCTGGTTGGTTTAGTCAAGAATTTCTAGTTCCATGCTCAAGGAATTGCTTTCCCTTCCTCCTTTCATGACAATGGTCGTTTGTTGTGGTTAGCATGTCTTAGTGGTATTCTTTTGGGAATTTGGAAAGAAAGGAACAACAAGATTTTTAGTGGAGTGGAGCAATATATGGGTGAGGTATGGTCCCTTGTTTGATTTCATACCTCGCTTTGGGTCTCTATTAGATTACCAATCAACCCAAAAGCTTAAGCTTATGGGTTTTGGTCAATTTAATGATATCAACTCTCCAACACTCCCCCTACTTGTGAGTGCCTAACAAGTGAAAATCAATAGTAATTAGGAAGAAAGCGACATTATAAGGGTTTGAACACAAGACCTCTTGCTCTAATACCATGTCTGATAACCAATTAACCAAAGATCTTGTAAATTTAATTATATTAACACTTTAAGTTTATGTTCGTAAAGACTTGTGTAATTATTCCGTAGGTCTCATTTTGTTTTTAGTGTAGCTGGGCTTTCTTTGAGTTTTTTTTAAAGTCTCTCTCTCTCTATAATATATTAGATATTAACTGGTTTTTAAAGCTGAATGCTTGAAAATTTATTTTGAGATGTTGGCATTTATTTAAGTGATGTGGTATCGCTTAGCCTTTGAATATCCATTTTTTATCACAGGTATTGCTGCATGAGATTGTGGTAACTCTCTTTACTGCATTTTAAATTTAATTAAACGTTATACTTGTGCATTTTTCATATGCATGTTTATCTGTTGCTTAAATTGCATCCATGTTTCATTTTTTTTATGACCATCATAATGTGGTTCCAAAGTATGGTATTTAGAACGTCTGTTTGAAGAATCAAGTTGTATTAAATGTAATGAATGTTCTTTGGGTAGGAATACGTGATTGTCCTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGTAATTTGATTCTCATCACTCTTGTTCATATTTGTAATTTGGGTTGTAACTTGTGTCGACTCATTCTTGTAGCTAGTTGATTTAACAGTTTTATAAGCTTATTTCAACAGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGAGCAAAGTCTCCTGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGGTTCGTGGTCTGACTTTTCTCTTCTGATTTTTTACCTAGAAGCAGGTAACTGGGTTTTAAAATGTGAAATTTAATTTATTTTTATTTTTATTTTTTATTTTTTGAACACGTGAAATTTGAATTAGTGAAAAGCAATGGGCAAATTGGTTCGTTGAACAATATCTTGTTATTTCACAGTTTGCAATGTAATAGCTTTGCAATTTTAGGAACCCACAAATTTTTGTTTTAAACCGTATGTTTTTATGTATTAAATTTTTTAAAGTTTCTCAACTTTAAAGAAGTCCTCAATTATGGTGCCCAAGACCTATTAACCCTTATGTACGTGTTGTGTTTTTCTGACTCTGTGTGAACTCTAATTTCTTCTTCTTGCCCTGTTGATATGCTATGTTTAAATTCTGGTTCTTTTTTATATAATACATAACTATATTCAATTTTGACATTATTTGTTGGGAAAGTAATGATCAGAACTGTAGTTTAGTTTAATTCATATGAATGGATAAACCAGAAACATGAAATATTATGCTATAATTTTGCTCAATATTAGAAAACAAACAGTGTGAGGCAAACGAGTAGTGGGCAAGATGGCATGGATGCTTGTCACTGGGAGGGCACTCCATACTTTAGTTTCAATTGGGAAGTTTTTTGAATTTTTTGTAATGCACCTTTTAGTGCTCTGAGAGTTTTCTTCCTCCCTCCATTTCACTATCAATGAATTTGTTTCCCTTTCTAAAAAAGTATTCTTGATTTGTTTTTGTGACTTTTTTCTGCAATAGTTTGAATGCTCTACTAAACTACCCCAGTTTTGATATTTTTAGTAATTGGAAATAACTCGGTCCAGAATATTGGATTGTTTATTGATGCATTATTCTAATTGGAAATGAATTATGTTTTGTGTTTTACAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCAAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTTCAGTGGCCAAATTGCAGAATATGGAGTAACTTCTGTAGGGGATGATAAACATGGAGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAAGTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAACCTCCTGTATCTGCTAATGGTGGGCTCTCTTTTCTGGTTGCTTGCTCTACAATTTAAATGATAATTAGTTTGTACAATTCTTTTGTTTATCTCTTTTTCTTTTATTTATGAAGTTTCTCATTCTATCTTTTCCCTGTATTTGATTATCGACTATCCATTATCATTTTGGGCTCGTACTTCATTATTCTTTAGTTGGTTTTTCATTCTAAATAATTTGCTTATGTTATCTTATGCAGGCCAATTTGCTGCCTCTCGTCCTCTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTAATACGTCACTCATATGTTGCTTTTGTGAAGAACTGGGGACTGTTCATCACCTTACATTAATTTTCACGTACAGGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTAAGGCATTACAGTTCTTTATTTTTCCCCTGCTACCTCTTTTTGTTACATTGCTTTTTAACAAATTGAGTGATGCGAGTGGAGCAGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATCCTGAAGGTACATGTCGTATTTCTAACATTTTTTTTTCTGTAGTATGAATCATCACCCATAGAAAGAAAAAGCGTTCGCGAACTCCCCCCTATGTGCTTAGTTTCGGTAGTTGTGTTGGTCAGTTCACAATCTCTACTGTTGTGGGCCGGTGGTATTTTTTTATTTTCTTTCTTAACTGGGTTGTTATTCAAGTATATGGTTGCTTTTTACATAATCAGTGATTTTTGCTGGTGTTTTCATGCCTAACTAAACAGAGAGCGAAAGTTAAATGAAGTTTCTGAAACCACTGAAATGGAAATGGTAGTAGACATCTAGAGGCAAACATTAAAAATGTACAGGATCCTTTCAGTCTTGGGCGTTATTTGTGCCCACCTTTTCTTTTTCTTTCATTAATCTTAACGAAAGTTTGCTTTCTCATAAAGAAAAATGTTCAAGAATCGTAGTTGCGTTAGGTTGATTTGTTCTTTCAATGGTATTTTAATATAACTTTTTCATCATGATGTGAAAACTATGAATTGATTGGAACCCACAGTTTGTTGAGGTATCTGCTGCATAATGTCGTCAACGAATAAAGCTGCATGTTCGGTTGATTTTTCATTGCAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTCGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAGGGGAACCACTCGATTGATAGAGCTGTTATCTCCTCAAGAAAAACTGTTCTCAAAATTATTTTGCGGAAAGAGAATCACGCAGATCAAGTATGACCTCCCCAAATTTGGTTTTGTTTTTTGTTTTGGTGGTTCATGATTCTTCGTGCATCATGGTGGAGGAAGCTGAGAAAGCAGAGACCAAGGGAATTTTCAGCAGTTTCTAGGAGAAATATTTTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTATAGCTAGGAAACTCATGATGGCGGTTCAGATGGTTTCACAATTTTGAGCTCCCACCGAATTCTTATTCAGCTACTAGATTAAATTTGTGAATAGAGTAAAGAGTAGACTGTAGACCCTTTTTTTTTTTT

mRNA sequence

TTTTTCCATTTTTGTTCTGTTCATCTCAAATCTCTCTCCCTCAGCCATGTTCTCTGATGAAATCCGCTCTCCGTTGCGTTTCTGCGTTTAATTTCCAGCGGCTTCCTTGTTAATTGGTTTTCTCTGTCCAGTTTTCACAGGATCGGTGGAACCGGCTAGGGTTCATGGAAGCTGCAATTCGGGAGTTTAATATTTGAGGGTTTGAATATCGATTGAACTCCTGTGTTAGTGTTATTAAAATTAAGCGTTCGGGGTTCTCGATTGTGAAGCTTCGTGATAGAACGCATCCGAGATGGGTAGTGATGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCCTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGAGCAAAGTCTCCTGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCAAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTTCAGTGGCCAAATTGCAGAATATGGAGTAACTTCTGTAGGGGATGATAAACATGGAGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAAGTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAACCTCCTGTATCTGCTAATGGCCAATTTGCTGCCTCTCGTCCTCTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATCCTGAAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTCGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAGGGGAACCACTCGATTGATAGAGCTGTTATCTCCTCAAGAAAAACTGTTCTCAAAATTATTTTGCGGAAAGAGAATCACGCAGATCAAGTATGACCTCCCCAAATTTGGTTTTGTTTTTTGTTTTGGTGGTTCATGATTCTTCGTGCATCATGGTGGAGGAAGCTGAGAAAGCAGAGACCAAGGGAATTTTCAGCAGTTTCTAGGAGAAATATTTTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTATAGCTAGGAAACTCATGATGGCGGTTCAGATGGTTTCACAATTTTGAGCTCCCACCGAATTCTTATTCAGCTACTAGATTAAATTTGTGAATAGAGTAAAGAGTAGACTGTAGACCCTTTTTTTTTTTT

Coding sequence (CDS)

ATGGGTAGTGATGATCGTGTCGATGATCGGACGTTCAAGGTTGATTTCAGTGGCGAGGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCCTGTTGAGGAACGGCAGGCGCAAAGAAGAAGCACAGAATGAACTTAATGTATTTTTGGCAGATGAGAGCCGTTCTTTTGTATCTTGGCTGTGGGATCATCTGGCTTCATGTTTGGATTTATACGTGGAGCCGCCTACTAAATCTTCTGCCAATGACAATGAGGTGCCCAGAGCAAAGTCTCCTGTAGAAGAACCAGATATAAGAAATAATTCTAACAATCTGGAGTCTGATTCAGAAAGAGGGAAGTCGGAACAATTATCTAGCAGACAGCATAATAGGGAATGGAAAGGAATTGCTAATGATGAAACCCGTGTTGCTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCCAGTCACAGGAAAAGGAGCCGAGATGATGATCATCAAGGCACTGAGAGGGAGGCAGCCTTTCAGGTAAGCATTGCTGCCCCTCGGCGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAAGCCCTCTAATGAAGATAAGGAGACCCTTCCAAAGCGTCTTCGTTCGGTTGTTTCTGTATCCAATAGTGACACAACTAATCGTCCCAGGCGGCTTCAATCTGTTGCAAAAGTGCCAAATCCTATGGCAACTGTTATTAAGGCTGTGACTGAGGCAGCTGAAGATGTGATAAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTTGTGATATGGATTTAACAGAGTTCAGTGGCCAAATTGCAGAATATGGAGTAACTTCTGTAGGGGATGATAAACATGGAGAACTCAATCGTACACAGGATCGACCATACTCAGCCACCTATCTCGGGAGAAGCAATTATAGTGGGAAATATGCTCCCAATGAGGGCATGTTTGAACCTGAAACTCGATTAGCATCAGATTCTATATCTGAAAATGAAGATGTTAATATTCAGGGTCACAGAGTACTTGATGATTCTTGGACTGCAGAATCAGGAGTGAGAAAGGGAGGCAATTTGCGAACTGTGCCATTCAGGGATGTCGAGAACTCTGAAGATGAACGCATGACACAATACAAACAGAAGGATCAACCTTCCTTAGTTACAAATTCCTCACGTGACATTGTAAACATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCCTGGGCAGATTCCTGAAGTTGGTGGTCAAAAGTTTTTGCAGGAGGGTGAGTTACAAGGTACCGGATCTGCTGTGCAAGTTACGGAGAATGGTGAGCCAGTTAATATTGTTAACCAACAGAAAAGGCCTGCAGCAAACCTTCAAAAAGAGTTCCAGAAACCTCCTGTATCTGCTAATGGCCAATTTGCTGCCTCTCGTCCTCTAGAGGATGCTGATGCTCGAACCATTTTTGTTAGCAATGTTCACTTTGCTGCTACAAAGGATACCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTGTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCCGCTTATGTAGAGTTCATGAGAAAAGAATCTGCAGAGAACGCGTTGTCTCTTGACGGGACCTCGTTTATGTCTAGGATCCTGAAGGTCGTAAGGAAAAATAGTTCACAATTAGAAGGTGCTTCAATTGTTACCAGGCCTCGTGCTGTGCGTGGCTCGCCATTTCCTACTCCTAGATTTACCAGAGGTCCATTCCTGAGGGGCGTTCCTGGTGGACTTCGGGCTCGTCCCCCACTAAAACTTGGTGCCAGGAGCATGCAGTGGAAGCGAGATAGTCAGACCACAACTGCTGACAATGGTGCTTCTCTCTCTGGTAATTCTGTACTCTCATCTGGTGCTCGAAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGCGGACAAGTAG

Protein sequence

MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNNSNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVSVSNSDTTNRPRRLQSVAKVPNPMATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIAEYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKPADK

Homology

[Close]

BLAST of Carg11227-RA vs. NCBI nr
Match: XP_023528108.1 (nucleolin 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1253.0 bits (3241), Expect = 0.0e+00
Identity = 674/681 (98.97%), Postives = 678/681 (99.56%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE
Sbjct: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPR KSPVEEPDIRNN
Sbjct: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR
Sbjct: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
           DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX
Sbjct: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
           XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTE SGQIA
Sbjct: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVT VGDDK+GELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED
Sbjct: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI
Sbjct: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQDPGQIPE+GGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP
Sbjct: 421 VNISVNVNTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           AANLQKEFQKPPVSANGQFAASRP+EDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV
Sbjct: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP
Sbjct: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS
Sbjct: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           VLSSGARSLTYVRTEPKPADK
Sbjct: 661 VLSSGARSLTYVRTEPKPADK 680

[Close]

BLAST of Carg11227-RA vs. NCBI nr
Match: XP_022935152.1 (nucleolin 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 1239.9 bits (3207), Expect = 0.0e+00
Identity = 667/674 (98.96%), Postives = 670/674 (99.41%), Query Frame = 0


Query: 8   DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV 67
           DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV
Sbjct: 4   DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV 63

Query: 68  FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNNSNNLESD 127
           FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPV EPDIRNNSNNLESD
Sbjct: 64  FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVVEPDIRNNSNNLESD 123

Query: 128 SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRDDDHQGT 187
           SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR DDHQGT
Sbjct: 124 SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRADDHQGT 183

Query: 188 EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX 247
           EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX
Sbjct: 184 EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX 243

Query: 248 XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIAEYGVTSV 307
           XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTE SGQIAEYGVTSV
Sbjct: 244 XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIAEYGVTSV 303

Query: 308 GDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR 367
           GDD++GELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR
Sbjct: 304 GDDEYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR 363

Query: 368 VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNV 427
           VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNV
Sbjct: 364 VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNV 423

Query: 428 NTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQKE 487
           NTWKPPHYQDPGQIPE+GGQKFLQEGELQGTGSAVQVTENGE VNIVNQQKRPAANLQKE
Sbjct: 424 NTWKPPHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEAVNIVNQQKRPAANLQKE 483

Query: 488 FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT 547
           FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT
Sbjct: 484 FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT 543

Query: 548 TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP 607
           TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP
Sbjct: 544 TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP 603

Query: 608 FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR 667
           FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR
Sbjct: 604 FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR 663

Query: 668 SLTYVRTEPKPADK 682
           SLTYVRTEPKPADK
Sbjct: 664 SLTYVRTEPKPADK 677

[Close]

BLAST of Carg11227-RA vs. NCBI nr
Match: XP_022983276.1 (nucleolin 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 1231.9 bits (3186), Expect = 0.0e+00
Identity = 662/681 (97.21%), Postives = 668/681 (98.09%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDFSGEGM KLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE
Sbjct: 1   MGSEDRVDDRTFKVDFSGEGMTKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPR KSPVEEPDIRNN
Sbjct: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           SNNLESDSERGKSEQLSSRQHNREWK IANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR
Sbjct: 121 SNNLESDSERGKSEQLSSRQHNREWKEIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
            DDHQGTEREAAFQVSIAAPRRLLQFAMRDAVAT KPSNEDKETLPKRLRSVVXXXXXXX
Sbjct: 181 ADDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATMKPSNEDKETLPKRLRSVVXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
           XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTE SGQIA
Sbjct: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYG TSVGDDK+GELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPET LASDSISENED
Sbjct: 301 EYGATSVGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETGLASDSISENED 360

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI
Sbjct: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKP HYQDPGQIPE+GGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP
Sbjct: 421 VNISVNVNTWKPTHYQDPGQIPELGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
            ANLQKEFQKPPVSANGQ AASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV
Sbjct: 481 TANLQKEFQKPPVSANGQIAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILK+VRKN+SQL+GASIVTRP
Sbjct: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKIVRKNTSQLDGASIVTRP 600

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPTPRFTRGPFLRGVPGGL ARPPLKLGARSMQWKRDSQ TTADNGASLSGNS
Sbjct: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLGARPPLKLGARSMQWKRDSQNTTADNGASLSGNS 660

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           VLSSGARSLTYVRTEPKPADK
Sbjct: 661 VLSSGARSLTYVRTEPKPADK 681

[Close]

BLAST of Carg11227-RA vs. NCBI nr
Match: XP_023528109.1 (uncharacterized protein LOC111791127 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1178.3 bits (3047), Expect = 0.0e+00
Identity = 647/681 (95.01%), Postives = 650/681 (95.45%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE
Sbjct: 1   MGSEDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPR KSPVEEPDIRNN
Sbjct: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRPKSPVEEPDIRNN 120

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR
Sbjct: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
           DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX
Sbjct: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
           XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTE SGQIA
Sbjct: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIA 300

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVT VGDDK+GELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED
Sbjct: 301 EYGVT-VGDDKYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI
Sbjct: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                       FLQEGELQGTGSAVQVTENGEPVNIVNQQKRP
Sbjct: 421 ----------------------------FLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           AANLQKEFQKPPVSANGQFAASRP+EDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV
Sbjct: 481 AANLQKEFQKPPVSANGQFAASRPVEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP
Sbjct: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS
Sbjct: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 652

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           VLSSGARSLTYVRTEPKPADK
Sbjct: 661 VLSSGARSLTYVRTEPKPADK 652

[Close]

BLAST of Carg11227-RA vs. NCBI nr
Match: XP_022935153.1 (uncharacterized protein LOC111442109 isoform X2 [Cucurbita moschata])

HSP 1 Score: 1165.2 bits (3013), Expect = 0.0e+00
Identity = 640/674 (94.96%), Postives = 642/674 (95.25%), Query Frame = 0


Query: 8   DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV 67
           DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV
Sbjct: 4   DDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELNV 63

Query: 68  FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNNSNNLESD 127
           FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPV EPDIRNNSNNLESD
Sbjct: 64  FLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVVEPDIRNNSNNLESD 123

Query: 128 SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRDDDHQGT 187
           SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR DDHQGT
Sbjct: 124 SERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSRADDHQGT 183

Query: 188 EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX 247
           EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX
Sbjct: 184 EREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXXXXXXXXX 243

Query: 248 XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIAEYGVTSV 307
           XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTE SGQIAEYGVTSV
Sbjct: 244 XXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTESSGQIAEYGVTSV 303

Query: 308 GDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR 367
           GDD++GELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR
Sbjct: 304 GDDEYGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENEDVNIQGHR 363

Query: 368 VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDIVNISVNV 427
           VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI       
Sbjct: 364 VLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI------- 423

Query: 428 NTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQKE 487
                                FLQEGELQGTGSAVQVTENGE VNIVNQQKRPAANLQKE
Sbjct: 424 ---------------------FLQEGELQGTGSAVQVTENGEAVNIVNQQKRPAANLQKE 483

Query: 488 FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT 547
           FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT
Sbjct: 484 FQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDAT 543

Query: 548 TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP 607
           TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP
Sbjct: 544 TGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSP 603

Query: 608 FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR 667
           FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR
Sbjct: 604 FPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNSVLSSGAR 649

Query: 668 SLTYVRTEPKPADK 682
           SLTYVRTEPKPADK
Sbjct: 664 SLTYVRTEPKPADK 649

[Close]

BLAST of Carg11227-RA vs. TAIR10
Match: AT3G12640.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 393.3 bits (1009), Expect = 3.1e-109
Identity = 290/697 (41.61%), Postives = 385/697 (55.24%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS D VDDRTF  DFS EG+AKL+E +K K+KE+MGDYTDD LVEYVIVLLRNGRRKEE
Sbjct: 1   MGSADLVDDRTFNGDFSVEGVAKLKEMVKDKLKEYMGDYTDDILVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLY----VEPPT-KSSANDNEVPRAKSPVEEP 120
           A NEL +FL D+S SFV+WLWDHLA  +D Y    VE  T KSS   +   +A  P    
Sbjct: 61  ANNELKIFLGDDSDSFVAWLWDHLAESVDEYFSSNVEGTTIKSSLISSHEDKALVP---- 120

Query: 121 DIRNNSNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSH 180
                   L+S+ ++G+S++ +  +  R+W+         +  + VS +      +  S 
Sbjct: 121 --------LDSEYDKGRSDKSNGARRGRQWR---------SQPTNVSEIPPLLSSEAQSQ 180

Query: 181 RKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVV-- 240
           RKRSR DD +  +REA   VS    RRLLQFA+RDA+A ++P+N   E+  KRLRSVV  
Sbjct: 181 RKRSRTDDSRNEQREAKPDVS----RRLLQFAVRDALAISRPANSSTESSLKRLRSVVST 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSS-SVFDRLGRQSCDMDL 300
                                   ATV+KAV EAAED  + KS  SVFDR+   +     
Sbjct: 241 STQNSSDPDPARKIRSVARVVNPMATVMKAVAEAAEDAKKPKSGRSVFDRISHSTG---- 300

Query: 301 TEFSGQIAEYGVTSVGDDKHGELNRTQDR---PYSATYLGRSNYSGKYAPNEGMFEPETR 360
           +E   Q    G  S  D++    ++ Q+     Y+ +      Y      N+    P+  
Sbjct: 301 SETLDQNMVLGEVSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTTNDTGLNPD-- 360

Query: 361 LASDSISENEDVNIQ------GHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQ 420
            +SD       VN+       G+R+               N  ++  R V++S+  + T 
Sbjct: 361 FSSDRGRLGSSVNVSHPSTYLGNRI--------------NNPNSLQHRLVDDSKRVKGTN 420

Query: 421 YKQKDQPSLVTNSSRDIVNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQ 480
           Y Q   P + T       + S N++T K    ++  +IP+VG Q+++ EG L  + +  Q
Sbjct: 421 Y-QNRLPEVAT--KHKTASFSGNIDTGKTVKLEEQRKIPDVGLQRYMDEGRLVSSEATTQ 480

Query: 481 V-TENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAA 540
           + T+      I N   +PAA++ KE      S  G  + +RPLEDA +RTIFV+NVHF A
Sbjct: 481 LSTQKILGDTIGNGNVKPAASV-KEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGA 540

Query: 541 TKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILK 600
           TKD+LSRHFNKFGEV+K  IVTD  TGQP GSAY+EF RKE+AENALSLDGTSFMSRILK
Sbjct: 541 TKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGTSFMSRILK 600

Query: 601 VVR-KNSSQLEGASIVTRPRAVRGSPFPTPRFTRGP-FLRGVPGGLRARPPLKLGARSMQ 660
           +V+  N    E AS ++  R          RFTR P + RG  G +R R  ++ G RSMQ
Sbjct: 601 IVKGSNGQNQEAASSMSWSRG--------GRFTRAPSYFRG--GAVRGRSVVRGGGRSMQ 631

Query: 661 WKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPK 678
           WKRDS    AD G   + N+V  + ARSLTYVR E K
Sbjct: 661 WKRDS----ADTG---NNNNVAPNNARSLTYVRAESK 631

[Close]

BLAST of Carg11227-RA vs. TAIR10
Match: AT2G24350.1 (RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-19
Identity = 158/628 (25.16%), Postives = 249/628 (39.65%), Query Frame = 0


Query: 7   VDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEEAQNELN 66
           VD  TF +    E  ++L+  I   +  F  DY+DD L EYV VL+ NG+ + +A  +L 
Sbjct: 5   VDGLTFPMSRVSESASRLKTIISDMLPRFTDDYSDD-LSEYVTVLVCNGKSQRQASEDLE 64

Query: 67  VFLADESRSFVSWLWDHLASCLDLYVEPPTKSS---------ANDNEVPRAKSPVEEPDI 126
            FL ++S  FV  LW+ L      Y      +S         +ND  + +  S  +  D 
Sbjct: 65  AFLKEQSWKFVVCLWELLVK----YFSQSNSASGPKTDVDFGSNDTLIKQGLSSRKYDDY 124

Query: 127 RNNSNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRK 186
              +    +D     +EQL S         I + E  V+P+ E  ++        P  R 
Sbjct: 125 DCKA----ADGTNSMNEQLIS-----VTAPIDDIEAPVSPKVEKMKMSRQELIDSPCTRA 184

Query: 187 RSRDDDH---QGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVX 246
           R R  ++    G  R+    V ++A +   Q   R+     K  NE   TL KR  S   
Sbjct: 185 RRRKKENWNSSGYSRKVLRSVIVSATQ---QPCDRNPAKYEKSMNERSRTLKKRPYS--- 244

Query: 247 XXXXXXXXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSS----SVFDRLGRQSCDM 306
                                  A   +AV+    D    + +    SV+DRLGR S + 
Sbjct: 245 --------------PERELDSRFAPSGRAVSARYHDASLHQETEPHVSVWDRLGRASSEC 304

Query: 307 DLTEFSGQIAEYGVTSVGDDKHGELNRTQDRPYSATY---LGRSNYSGKYAPNEGMFEPE 366
            L   S  ++++G+ +     H +        YS  +     R   +  Y      F+ +
Sbjct: 305 VLDTESRTLSKFGIQTRETKVHQQHGPVFPAAYSEQHSEIFQREVLAVGYRHRVPQFDKD 364

Query: 367 TRLASDSISENEDVNIQGHRVLDDSWTAESGV--RKGGNLRTVPFRDVENSEDERMTQYK 426
            +  S++I+  E      H   + S     G+     G    VP             QYK
Sbjct: 365 RKPKSETITSTEP-----HIAYNLSRKRRYGMVSPNSGEFSYVP-------------QYK 424

Query: 427 QKDQ----PSLVTNSS--RDIVNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTG 486
           Q +Q    PSL+++ S  +DI +   NV                   ++ +QE EL+   
Sbjct: 425 QAEQDFEKPSLLSHQSTKQDIFSEIKNV-------------------KEKMQELELR--- 484

Query: 487 SAVQVTENGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVH 546
                         + Q K+      +E +  P S   Q+      + +++R I V+NV+
Sbjct: 485 --------------IIQSKQLKKQKVEERKPSPQSGESQYQE----DVSESRVIHVTNVY 537

Query: 547 FAATKDTLSRHF-NKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMS 606
           +AA K+ +S  F +K G V  VI+VTD  T  PKG+A+V F  KES   A++L GT F S
Sbjct: 545 YAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYS 537

[Close]

BLAST of Carg11227-RA vs. TAIR10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-12
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 506 EDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESA 565
           E+ DAR++FV NV +A T + + +HF   G V +V I+TD   GQPKG AYVEF+  E+ 
Sbjct: 87  EEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAV 146

Query: 566 ENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAVRGSPFPTPRFTRGPFL 620
           + AL L+ +    R LKV++K ++       + + R  R +P+   RF R PF+
Sbjct: 147 QEALQLNESELHGRQLKVLQKRTN----VPGLKQFRGRRFNPYMGYRFRR-PFM 194

[Close]

BLAST of Carg11227-RA vs. TAIR10
Match: AT5G51120.2 (polyadenylate-binding protein 1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-12
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 0


Query: 484 LQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIV 543
           L+ E++K  ++ +G  AA +  E+ D+R+I+V NV +A T + + +HF   G V +V I+
Sbjct: 117 LEFEYEKEIIN-SGVSAAEK--EEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 176

Query: 544 TDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRPRAV 603
           TD   GQPKG AYVEF+  E+ +N+L L+ +    R +KV  K ++ + G     R    
Sbjct: 177 TD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTN-VPG----MRQFRG 236

Query: 604 RGSPFPTPRFTRGPFLRGVP 624
           RG PF   R  RG F+ GVP
Sbjct: 237 RGRPF---RPMRG-FMPGVP 243

[Close]

BLAST of Carg11227-RA vs. TAIR10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-11
Identity = 51/157 (32.48%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 439 GQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRPAANLQK-----EFQKPPV 498
           G+IPEVG                  VTE  E    + + +  AA L++     E +    
Sbjct: 11  GEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGAT 70

Query: 499 SANGQFAASRP-LEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPK 558
                 AA++   E+ DAR+++V NV +A T + +  HF   G V +V I+ D   GQPK
Sbjct: 71  QDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPK 130

Query: 559 GSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSS 590
           G AYVEF+  E+ + AL L+ +    R LKV  K ++
Sbjct: 131 GFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTN 166

[Close]

BLAST of Carg11227-RA vs. Swiss-Prot
Match: sp|Q9DDY9|PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-13
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 485 QKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVT 544
           Q     PP +A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ 
Sbjct: 137 QMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 196

Query: 545 DATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 603
           D  TG PKG AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 197 DKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 255

[Close]

BLAST of Carg11227-RA vs. Swiss-Prot
Match: sp|Q7ZXB8|PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-13
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 485 QKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVT 544
           Q     PP +A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ 
Sbjct: 136 QMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 195

Query: 545 DATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 603
           D  TG PKG AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 196 DKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 254

[Close]

BLAST of Carg11227-RA vs. Swiss-Prot
Match: sp|Q6NVP7|PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis OX=8364 GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-13
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 485 QKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVT 544
           Q     PP +A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ 
Sbjct: 137 QMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 196

Query: 545 DATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 603
           D  TG PKG AY+EF  KES   +L+LD + F  R +KVV K +++  G S   R  PRA
Sbjct: 197 DKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNR-PGISTTDRGFPRA 255

[Close]

BLAST of Carg11227-RA vs. Swiss-Prot
Match: sp|Q8CCS6|PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 5.2e-13
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 485 QKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVT 544
           Q     PP +A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ 
Sbjct: 142 QMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 201

Query: 545 DATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQ 591
           D  +G PKG AY+EF  KES   +L+LD + F  R +KV+ K +++
Sbjct: 202 DKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 247

[Close]

BLAST of Carg11227-RA vs. Swiss-Prot
Match: sp|Q28165|PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 77.4 bits (189), Expect = 6.8e-13
Identity = 55/159 (34.59%), Postives = 79/159 (49.69%), Query Frame = 0


Query: 485 QKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKVIIVT 544
           Q     PP +A     +     +ADAR+I+V NV + AT + L  HF+  G V +V I+ 
Sbjct: 146 QMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC 205

Query: 545 DATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTR--PRA 604
           D  +G PKG AY+EF  KES   +L+LD + F  R +KV+ K +++  G S   R  PRA
Sbjct: 206 DKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR-PGISTTDRGFPRA 265

Query: 605 VRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQW 642
              +       +R  F  G     R R   +  AR+  W
Sbjct: 266 RYRARTTNYNSSRSRFYSGFNSRPRGR-VYRGRARATSW 302

[Close]

BLAST of Carg11227-RA vs. TrEMBL
Match: tr|A0A1S3CFE4|A0A1S3CFE4_CUCME (nucleolin 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1)

HSP 1 Score: 1077.4 bits (2785), Expect = 0.0e+00
Identity = 561/681 (82.38%), Postives = 607/681 (89.13%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSA  NEVPR KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSA--NEVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVV       
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
                            ATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTE SG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVTSV +D++G++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQD GQIPE+ GQKFLQE ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 VNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RPLE+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 665

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 683

[Close]

BLAST of Carg11227-RA vs. TrEMBL
Match: tr|A0A0A0L9I7|A0A0A0L9I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697930 PE=4 SV=1)

HSP 1 Score: 1067.8 bits (2760), Expect = 1.0e-308
Identity = 554/681 (81.35%), Postives = 598/681 (87.81%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDF+G+GMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP K+SA  NEVP  KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASA--NEVPTQKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+  REW+GIAN+ETRV PRSEVSRVKHSSPEQVP HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
            DDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVV       
Sbjct: 186 PDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDT 245

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
                            ATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTE SG+ +
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPS 305

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYG T V +D++G++N ++DRPYSATYL R NY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNIQGHRV DDSWTAESGVRKG NLRTV FR VENS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
           VNISVNVNTWKPPHYQD GQIPE+ GQKFLQE ELQGT SAVQV ENGEPV +VNQ+K P
Sbjct: 426 VNISVNVNTWKPPHYQDQGQIPELAGQKFLQESELQGTRSAVQVMENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQ+EFQKPP+SANGQFA +RPLE+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS V  P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KL ARSMQWKRD+QTTTADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNS 665

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           + S GARSLTYVRTEPKP DK
Sbjct: 666 IPSPGARSLTYVRTEPKPVDK 684

[Close]

BLAST of Carg11227-RA vs. TrEMBL
Match: tr|A0A1S3CFZ8|A0A1S3CFZ8_CUCME (uncharacterized protein LOC103500309 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1)

HSP 1 Score: 1008.4 bits (2606), Expect = 7.4e-291
Identity = 536/681 (78.71%), Postives = 581/681 (85.32%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSA  NEVPR KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSA--NEVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVV       
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
                            ATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTE SG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVTSV +D++G++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                       FLQE ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 ----------------------------FLQESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RPLE+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 655

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 655

[Close]

BLAST of Carg11227-RA vs. TrEMBL
Match: tr|A0A1S3CGU7|A0A1S3CGU7_CUCME (uncharacterized protein LOC103500309 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1)

HSP 1 Score: 1000.7 bits (2586), Expect = 1.5e-288
Identity = 533/681 (78.27%), Postives = 578/681 (84.88%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           MGS+DRVDDRTFKVDF+GEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRR+EE
Sbjct: 6   MGSEDRVDDRTFKVDFTGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREE 65

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           AQNELNVFLAD+S SFVSWLWDHLAS +DLYVEPP KSSA  NEVPR KSPV EPD RNN
Sbjct: 66  AQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKSSA--NEVPRPKSPVAEPDTRNN 125

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIANDETRVAPRSEVSRVKHSSPEQVPSHRKRSR 180
           S+NLESDSERGK+E+LSSR+ NREW+GIAN+ETRV P+SEVSRVKHSSPEQVP+HRKRSR
Sbjct: 126 SHNLESDSERGKTEKLSSRRRNREWRGIANEETRVIPKSEVSRVKHSSPEQVPNHRKRSR 185

Query: 181 DDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETLPKRLRSVVXXXXXXX 240
            DD QGTEREAAFQVSIAAPRRLLQFAMRDAVATT+PSN  KE   KRLRSVV       
Sbjct: 186 PDD-QGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNAAKEPHSKRLRSVVSASNSDT 245

Query: 241 XXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSSSVFDRLGRQSCDMDLTEFSGQIA 300
                            ATVIKAVTEA+EDV+RVKSSSVFDRLGRQS DMDLTE SG++ 
Sbjct: 246 TNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRLG 305

Query: 301 EYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEGMFEPETRLASDSISENED 360
           EYGVTSV +D++G++N ++DRPYSATYL RSNY GKY+ +E MFEPET LASDS SENED
Sbjct: 306 EYGVTSVENDQYGDMNHSEDRPYSATYLERSNYIGKYSRDEPMFEPETGLASDSASENED 365

Query: 361 VNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDERMTQYKQKDQPSLVTNSSRDI 420
           VNI+GHRV DDSWTAESGVRKG NLRTV FR V+NS+DER+ QY QKDQPSL  NSSRDI
Sbjct: 366 VNIRGHRVFDDSWTAESGVRKGSNLRTVAFRAVDNSDDERVAQYTQKDQPSLAANSSRDI 425

Query: 421 VNISVNVNTWKPPHYQDPGQIPEVGGQKFLQEGELQGTGSAVQVTENGEPVNIVNQQKRP 480
                                          E ELQGT SAVQVTENGEPV +VNQ+K P
Sbjct: 426 -------------------------------ESELQGTRSAVQVTENGEPVTLVNQRKTP 485

Query: 481 AANLQKEFQKPPVSANGQFAASRPLEDADARTIFVSNVHFAATKDTLSRHFNKFGEVVKV 540
           A+NLQKEFQKPP+SANGQFA++RPLE+ADARTIFVSNVHFAATKD+LSRHFNKFGEV+KV
Sbjct: 486 ASNLQKEFQKPPLSANGQFASTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKV 545

Query: 541 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNSSQLEGASIVTRP 600
           IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKN+SQLEGAS VT P
Sbjct: 546 IIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWP 605

Query: 601 RAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLGARSMQWKRDSQTTTADNGASLSGNS 660
           RAVRGSPFPT RFTR PF+RGVPGG RARPP+KLGARSMQWKRD+QT TADNGASLSGNS
Sbjct: 606 RAVRGSPFPTSRFTRVPFMRGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNS 652

Query: 661 VLSSGARSLTYVRTEPKPADK 682
           + S GARSLTYVRTEPKPADK
Sbjct: 666 IPSPGARSLTYVRTEPKPADK 652

[Close]

BLAST of Carg11227-RA vs. TrEMBL
Match: tr|F6HBB3|F6HBB3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g01190 PE=4 SV=1)

HSP 1 Score: 636.3 bits (1640), Expect = 7.7e-179
Identity = 385/703 (54.77%), Postives = 470/703 (66.86%), Query Frame = 0


Query: 1   MGSDDRVDDRTFKVDFSGEGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRKEE 60
           M   DR+DDRTF+V+FSG+G A+LRER+      FMGDYTDDTLVEYVIVLLRNGRRKEE
Sbjct: 1   MEGADRMDDRTFRVNFSGDGAARLRERVXXXXXXFMGDYTDDTLVEYVIVLLRNGRRKEE 60

Query: 61  AQNELNVFLADESRSFVSWLWDHLASCLDLYVEPPTKSSANDNEVPRAKSPVEEPDIRNN 120
           A+NELNVFL D+S SFVSWLWDHL S L LYV P     +  +E+   K  + E   RN+
Sbjct: 61  ARNELNVFLGDDSHSFVSWLWDHLDSHLQLYVLP---QESYPDEIAETKHTLGEHTERND 120

Query: 121 SNNLESDSERGKSEQLSSRQHNREWKGIAND---------------ETRVAPRSEVSRVK 180
           S +L+S+SERG S +  SR HNREWKG+A D               +T      +V   K
Sbjct: 121 SLHLDSESERGNSLRSRSR-HNREWKGLARDGAEPPPLRSSEDDHVQTEEKTHRKVGHAK 180

Query: 181 HSSPEQVPSHRKRSRDDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTKPSNEDKETL 240
            S   + P+ +KR+R DD +  +RE   Q +I APRRLLQFA+RDAVAT++PSN   E  
Sbjct: 181 RSLSPKHPNQKKRNRPDDLKQAKREVVSQATINAPRRLLQFAVRDAVATSRPSNLAAEPK 240

Query: 241 PKRLRSVV--XXXXXXXXXXXXXXXXXXXXXXXXATVIKAVTEAAEDVIRVKSS-SVFDR 300
            KRLRSVV                          AT IKAV EAAEDVI+V+SS +VFDR
Sbjct: 241 LKRLRSVVSTSTGDSSLDDRPQRLQSVARMPSAMATAIKAVAEAAEDVIKVRSSGNVFDR 300

Query: 301 LGRQSCDMDLTEFSGQIAEYGVTSVGDDKHGELNRTQDRPYSATYLGRSNYSGKYAPNEG 360
           LGR    MDL+E S Q A +  T   D  + +  +  ++  S T+L RS YS  YA N  
Sbjct: 301 LGRGPRGMDLSEVSDQQAGFRETGTEDGGYEDFKQIPEKTRS-THLQRSAYSEHYAGNVT 360

Query: 361 MFEPETRLASDSISENE---DVNIQGHRVLDDSWTAESGVRKGGNLRTVPFRDVENSEDE 420
           M E ET LASDS S+NE   DVN+ G R++D S +  +G  KG +   V +   +N+++ 
Sbjct: 361 MLESETGLASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADEG 420

Query: 421 RMTQYK-QKDQPSLVTNSSRDIVNISVNVNTWKPP-HYQDPGQIPEVGGQKFLQEGELQG 480
             T     + QPS V N+SR IVNISVNVNTWKPP HYQ P ++ EV GQK +Q G   G
Sbjct: 421 MRTMRSIDQGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQ-GNETG 480

Query: 481 TG-SAVQVTE-NGEPVNIVNQQKRPAANLQKEFQKPPVSANGQFAASRPLEDADARTIFV 540
           TG S V++ + NG PV++ N   +PA + Q+E QK   SA G ++  RPLEDAD+RTIFV
Sbjct: 481 TGKSGVRLMKANGNPVSVGNGNAKPAVDTQRESQKMQPSAPGSYSTGRPLEDADSRTIFV 540

Query: 541 SNVHFAATKDTLSRHFNKFGEVVKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTS 600
           +NVHFAATKD+LSRHFNKFGEVVKVIIVTDA TGQPKGSAYVEFMRKE+AE+ALSLDGTS
Sbjct: 541 NNVHFAATKDSLSRHFNKFGEVVKVIIVTDAATGQPKGSAYVEFMRKEAAEHALSLDGTS 600

Query: 601 FMSRILKVVRKNSSQLEGASIVTRPRAVRGSPFPTPRFTRGPFLRGVPGGLRARPPLKLG 660
           FMSRILKVV+++S+  E A  ++ PR  RGSPF   RF R PF RG+PG  RAR P+KLG
Sbjct: 601 FMSRILKVVKRSSTHQEAAPGMSWPRIARGSPFAAARFARVPFQRGIPGAFRARLPVKLG 660

Query: 661 ARSMQWKRDSQTTTADNGASLSGNSVLSSGARSLTYVRTEPKP 679
           ARS+QWKRD+Q T A++GA  S NSV S  ARSLTYVRTEPKP
Sbjct: 661 ARSLQWKRDAQPTLAESGAPASNNSVPSPTARSLTYVRTEPKP 697

The following BLAST results are available for this feature:

BLAST of Carg11227-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528108.1	0.0e+00	98.97	nucleolin 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022935152.1	0.0e+00	98.96	nucleolin 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022983276.1	0.0e+00	97.21	nucleolin 1-like isoform X1 [Cucurbita maxima]	[more]
XP_023528109.1	0.0e+00	95.01	uncharacterized protein LOC111791127 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022935153.1	0.0e+00	94.96	uncharacterized protein LOC111442109 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg11227-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12640.1	3.1e-109	41.61	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G24350.1	1.0e-19	25.16	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G65260.1	2.1e-12	39.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	2.7e-12	38.57	polyadenylate-binding protein 1	[more]
AT5G10350.1	6.6e-11	32.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Carg11227-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9DDY9\|PAB2A_XENLA	1.0e-13	40.83	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]
sp\|Q7ZXB8\|PAB2B_XENLA	1.0e-13	40.83	Polyadenylate-binding protein 2-B OS=Xenopus laevis OX=8355 GN=pabpn1-b PE=2 SV=...	[more]
sp\|Q6NVP7\|PABP2_XENTR	1.0e-13	40.83	Polyadenylate-binding protein 2 OS=Xenopus tropicalis OX=8364 GN=pabpn1 PE=2 SV=...	[more]
sp\|Q8CCS6\|PABP2_MOUSE	5.2e-13	38.68	Polyadenylate-binding protein 2 OS=Mus musculus OX=10090 GN=Pabpn1 PE=1 SV=3	[more]
sp\|Q28165\|PABP2_BOVIN	6.8e-13	34.59	Polyadenylate-binding protein 2 OS=Bos taurus OX=9913 GN=PABPN1 PE=1 SV=3	[more]

BLAST of Carg11227-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFE4\|A0A1S3CFE4_CUCME	0.0e+00	82.38	nucleolin 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1	[more]
tr\|A0A0A0L9I7\|A0A0A0L9I7_CUCSA	1.0e-308	81.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697930 PE=4 SV=1	[more]
tr\|A0A1S3CFZ8\|A0A1S3CFZ8_CUCME	7.4e-291	78.71	uncharacterized protein LOC103500309 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CGU7\|A0A1S3CGU7_CUCME	1.5e-288	78.27	uncharacterized protein LOC103500309 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|F6HBB3\|F6HBB3_VITVI	7.7e-179	54.77	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g01190 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR002483	PWI_dom
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11227	Carg11227	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11227-RA.three_prime_UTR.1	Carg11227-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11227-RA.CDS.8	Carg11227-RA.CDS.8	CDS
Carg11227-RA.CDS.7	Carg11227-RA.CDS.7	CDS
Carg11227-RA.CDS.6	Carg11227-RA.CDS.6	CDS
Carg11227-RA.CDS.5	Carg11227-RA.CDS.5	CDS
Carg11227-RA.CDS.4	Carg11227-RA.CDS.4	CDS
Carg11227-RA.CDS.3	Carg11227-RA.CDS.3	CDS
Carg11227-RA.CDS.2	Carg11227-RA.CDS.2	CDS
Carg11227-RA.CDS.1	Carg11227-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11227-RA.five_prime_UTR.1	Carg11227-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11227-RA.exon.8	Carg11227-RA.exon.8	exon
Carg11227-RA.exon.7	Carg11227-RA.exon.7	exon
Carg11227-RA.exon.6	Carg11227-RA.exon.6	exon
Carg11227-RA.exon.5	Carg11227-RA.exon.5	exon
Carg11227-RA.exon.4	Carg11227-RA.exon.4	exon
Carg11227-RA.exon.3	Carg11227-RA.exon.3	exon
Carg11227-RA.exon.2	Carg11227-RA.exon.2	exon
Carg11227-RA.exon.1	Carg11227-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11227-RA	Carg11227-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 512..584 e-value: 1.4E-21 score: 87.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 513..581 e-value: 7.9E-18 score: 63.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 511..588 score: 17.319
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 24..86 e-value: 3.2E-7 score: 30.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 465..592 e-value: 3.6E-24 score: 87.5
None	No IPR available	GENE3D	G3DSA:1.20.1390.10		coord: 15..89 e-value: 1.5E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 640..670
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 602..681
None	No IPR available	PANTHER	PTHR45275	FAMILY NOT NAMED	coord: 1..679
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 504..588