Carg09303-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTACAATAGTAACCAGCACCTTGTTGTGTCGGAGGACGATCTTCCCGAGCAGCCGGGGTTCGAGTTTACGGACTGGATGTTCGATAGGTGGCTCGATGAAAACTCTCCACCTCTGGTCGACTCGGCGATGTACCCGGCTTATCAGTCAGGGGAGATTGAGGAGTTTGTTGGAAGCACAATTCAGCAAGGAGAACCTAGCAGTAGTAAGCATAACTCTTATTATTACATTTTAGTGATTGTAAGTCTTTTCCGCTAACCATCACTAAAACAAGAGTTTTCACGTTGGTTAGAGAGGAAAATGAAATATTTTTTTTAAGAGTGTGGAAACCTCTCTCTAGCAAGTGCGTTTTAAAACTGTGAGGTTGATGACAATACGTAATGAGCTAAAGCAGACAATATCTGCTAGTGGTGGGCTTGGGCTGTTACAAATGATATTAGAGTTAGACGCTGGAACCCAATGGAGTGGATTGTGAGGTCCCACATTGGTTGAAGAGGAGAACGAAGTTTTCCTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACTGTGATGTGAGGCTAACGGCAATACGTAACGGCCATAGCAGACAATATCTGCTAGCAGTGGGCTTGAGTTGTTATAAATGGCATTAGAGCCCGACACTGAGTGGTGTGCCAACGAGAATGCTGGGAAATCAAGGGAGGTGGATTGTGAGATCACATCGGTGGGAGAGGGGAGCAAAACATTCCTTATACGGGTGTGGAAATCTCTCCCTAACAGACGCGTTTTAAAATTATGAGGTTGATGGTAATGCGTTATGAACTAAAACGAACAATATCTGCTACTAGCAGACTTATCCTTCTCCTTTTCTGAAAGGTGTGTGGCCTGATGAATGATGTTTAATGGTGTTAGTAGGAGACAGTGGGAGAGAGAGGGAAGTTAGAGAAAGATTTGCATTCAAGACCAAATCAGAAGTTGAGGTTCTCGATGATGGTTTCAAGTGGAGGAAGTATGGAAAGAAGATGGTGAAGAACAGCCCAAATCCGAGGTAAGAAAATGAATTATGTCTAAACATAAACATAACATGTTTGATTGTTAATCCAGTTTGGCTCGACCATCTACGAAATGCAGGAACTACTACAAATGCTCGGTCGAAGGCTGTCCGGTGAAGAAGAGAGTCGAGAGAGATCGAGAGGATCCAAAATATGTGATAACGACTTACGAGGGTGTTCATACTCATGAAAGTTCTTGATTTGTTTATTTTTAC ATGTCTTACAATAGTAACCAGCACCTTGTTGTGTCGGAGGACGATCTTCCCGAGCAGCCGGGGTTCGAGTTTACGGACTGGATGTTCGATAGGTGGCTCGATGAAAACTCTCCACCTCTGGTCGACTCGGCGATGTACCCGGCTTATCAGTCAGGGGAGATTGAGGAGTTTGTTGGAAGCACAATTCAGCAAGGAGAACCTAGCAGTAGAGACAGTGGGAGAGAGAGGGAAGTTAGAGAAAGATTTGCATTCAAGACCAAATCAGAAGTTGAGGTTCTCGATGATGGTTTCAAGTGGAGGAAGTATGGAAAGAAGATGGTGAAGAACAGCCCAAATCCGAGGAACTACTACAAATGCTCGGTCGAAGGCTGTCCGGTGAAGAAGAGAGTCGAGAGAGATCGAGAGGATCCAAAATATGTGATAACGACTTACGAGGGTGTTCATACTCATGAAAGTTCTTGATTTGTTTATTTTTAC ATGTCTTACAATAGTAACCAGCACCTTGTTGTGTCGGAGGACGATCTTCCCGAGCAGCCGGGGTTCGAGTTTACGGACTGGATGTTCGATAGGTGGCTCGATGAAAACTCTCCACCTCTGGTCGACTCGGCGATGTACCCGGCTTATCAGTCAGGGGAGATTGAGGAGTTTGTTGGAAGCACAATTCAGCAAGGAGAACCTAGCAGTAGAGACAGTGGGAGAGAGAGGGAAGTTAGAGAAAGATTTGCATTCAAGACCAAATCAGAAGTTGAGGTTCTCGATGATGGTTTCAAGTGGAGGAAGTATGGAAAGAAGATGGTGAAGAACAGCCCAAATCCGAGGAACTACTACAAATGCTCGGTCGAAGGCTGTCCGGTGAAGAAGAGAGTCGAGAGAGATCGAGAGGATCCAAAATATGTGATAACGACTTACGAGGGTGTTCATACTCATGAAAGTTCTTGA MSYNSNQHLVVSEDDLPEQPGFEFTDWMFDRWLDENSPPLVDSAMYPAYQSGEIEEFVGSTIQQGEPSSRDSGREREVRERFAFKTKSEVEVLDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDREDPKYVITTYEGVHTHESS
BLAST of Carg09303-RA vs. NCBI nr
Match: XP_023546261.1 (probable WRKY transcription factor 50 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 316.2 bits (809), Expect = 6.0e-83 Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of Carg09303-RA vs. NCBI nr
Match: XP_022962099.1 (probable WRKY transcription factor 50 isoform X2 [Cucurbita moschata]) HSP 1 Score: 310.1 bits (793), Expect = 4.3e-81 Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 0
BLAST of Carg09303-RA vs. NCBI nr
Match: XP_022997286.1 (probable WRKY transcription factor 50 isoform X2 [Cucurbita maxima]) HSP 1 Score: 307.0 bits (785), Expect = 3.6e-80 Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0
BLAST of Carg09303-RA vs. NCBI nr
Match: XP_022962098.1 (probable WRKY transcription factor 50 isoform X1 [Cucurbita moschata]) HSP 1 Score: 302.8 bits (774), Expect = 6.8e-79 Identity = 147/154 (95.45%), Postives = 149/154 (96.75%), Query Frame = 0
BLAST of Carg09303-RA vs. NCBI nr
Match: XP_022997285.1 (probable WRKY transcription factor 50 isoform X1 [Cucurbita maxima]) HSP 1 Score: 299.7 bits (766), Expect = 5.8e-78 Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0
BLAST of Carg09303-RA vs. TAIR10
Match: AT5G26170.1 (WRKY DNA-binding protein 50) HSP 1 Score: 137.9 bits (346), Expect = 5.3e-33 Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 0
BLAST of Carg09303-RA vs. TAIR10
Match: AT5G64810.1 (WRKY DNA-binding protein 51) HSP 1 Score: 124.8 bits (312), Expect = 4.6e-29 Identity = 64/121 (52.89%), Postives = 80/121 (66.12%), Query Frame = 0
BLAST of Carg09303-RA vs. TAIR10
Match: AT5G49520.1 (WRKY DNA-binding protein 48) HSP 1 Score: 108.6 bits (270), Expect = 3.4e-24 Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0
BLAST of Carg09303-RA vs. TAIR10
Match: AT4G39410.1 (WRKY DNA-binding protein 13) HSP 1 Score: 107.8 bits (268), Expect = 5.8e-24 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0
BLAST of Carg09303-RA vs. TAIR10
Match: AT4G26640.2 (WRKY family transcription factor family protein) HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23 Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 0
BLAST of Carg09303-RA vs. Swiss-Prot
Match: sp|Q8VWQ5|WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana OX=3702 GN=WRKY50 PE=2 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 9.5e-32 Identity = 62/72 (86.11%), Postives = 67/72 (93.06%), Query Frame = 0
BLAST of Carg09303-RA vs. Swiss-Prot
Match: sp|Q93WU9|WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana OX=3702 GN=WRKY51 PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 8.3e-28 Identity = 64/121 (52.89%), Postives = 80/121 (66.12%), Query Frame = 0
BLAST of Carg09303-RA vs. Swiss-Prot
Match: sp|Q9FGZ4|WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana OX=3702 GN=WRKY48 PE=2 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 6.2e-23 Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0
BLAST of Carg09303-RA vs. Swiss-Prot
Match: sp|Q9SVB7|WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=WRKY13 PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 51/79 (64.56%), Postives = 65/79 (82.28%), Query Frame = 0
BLAST of Carg09303-RA vs. Swiss-Prot
Match: sp|Q6VWJ6|WRK46_HORVU (WRKY transcription factor SUSIBA2 OS=Hordeum vulgare OX=4513 GN=WRKY46 PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 0
BLAST of Carg09303-RA vs. TrEMBL
Match: tr|A0A0A0KD40|A0A0A0KD40_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G363560 PE=4 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 4.0e-75 Identity = 135/153 (88.24%), Postives = 141/153 (92.16%), Query Frame = 0
BLAST of Carg09303-RA vs. TrEMBL
Match: tr|A0A1S3BCG1|A0A1S3BCG1_CUCME (probable WRKY transcription factor 50 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488510 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 1.2e-74 Identity = 135/153 (88.24%), Postives = 140/153 (91.50%), Query Frame = 0
BLAST of Carg09303-RA vs. TrEMBL
Match: tr|A0A1S4DVL8|A0A1S4DVL8_CUCME (probable WRKY transcription factor 50 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488510 PE=4 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 1.0e-59 Identity = 112/126 (88.89%), Postives = 117/126 (92.86%), Query Frame = 0
BLAST of Carg09303-RA vs. TrEMBL
Match: tr|A0A2N9HHY4|A0A2N9HHY4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39173 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43 Identity = 96/158 (60.76%), Postives = 121/158 (76.58%), Query Frame = 0
BLAST of Carg09303-RA vs. TrEMBL
Match: tr|A0A2P4MET3|A0A2P4MET3_QUESU (Putative wrky transcription factor 50 OS=Quercus suber OX=58331 GN=CFP56_45043 PE=4 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 5.2e-43 Identity = 98/152 (64.47%), Postives = 113/152 (74.34%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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