Carg09220-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09220-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	endoplasmic reticulum-Golgi intermediate compartment protein 3-like
Location	Cucurbita_argyrosperma_scaffold_018 : 24182 .. 26386 (+)
Sequence length	835

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGATGGGTGGATTAGGATGCAATATTACTATAACTGTTGCAAATTTTTGGAGGTTATCAGTAAAAAGCGTCCTGCCTGGAAATTTTCACTTTGCACCTGGGAAAAGCTTTAAGTCCGATGTTCATAGGGTAACATCTTATGGTGTATCAAGTCCAATTTACAGTTCATGTTCTGACTTTATATTGTTACAAACTTATAGGTCTTGTAATCTTTTCAGATAAGTCAGGGTTCTTAGATTTAGAGTCATTTTCTACTAGAGTTGTCATTATCATTTGGAGAATATTTCCCTGGCGTGGTGAATCCTCTGGATAGGTAGGCTTTCACTTCTTTTCTTGGGCTGTGACCTTATTTGCATTTATCTTTGATATTTTAATTTTTCAATTGTGAAGCGTGCAATGGATGCAAGAAACACCAAGTGCAACATACCAATATTTTATCAAGGTTAGTTTTTGAATTATTTTGAGAATAAACTTTGATGGTTTTGCTGGTATTCCTTATAAACTCAGAACGAGCCCCTTAATTAGCTAATGTAGGACTCCTCTCCCAATAATCCTCCCCTTAAACAAAGTACACCATAGAGCCTCCCTTGAGGTCTATGGAGCCCTCGAACAGCCTCCCCGTAATTGAGGTTCGACTCCTGGAGCCCTCGATCAAAGTACACTCTTTATTCGACACGTGAGTCACTTTTGACTACACCTTTAAGGCTCACAACTTCTTTGTTCAACATTTGAGGATTCTATTGACATAGCTAAGTTAAAGGGCTTGGCTCTGATACCATGTTAGGAACCATGACTCTCTACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTTATGGTTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACCAATTGTGATAGTGTTCCTTACTTATAAACCCATGATCAACCCCTTAATTAGCCGATGTGGGACTCCTCTCCTAACAATTCTCAACATTATTGTAATGAAGATATATCATATATCACATCATTCCTAGTATATTAGCTGGAGCAAGCCGAGTAGAGTTTCATTTGCTGTCTTGTTTTTGCAGGTTGTACCAACTGTTTACAAGGATGTTAGCGGGAATACCATCCAGTCAAACCAGGTTGATATTAGTAAACTCTGAAATCTGATTAATTGTAATTGTTACCACATATATGCTTCATATATTTGGGCGACGCCATAAAGATGAGAGCCATGTATTGTTGCAGTTCTCTGTCACAGAACATGTAAGGACTGCAGAAGTTGGACGGCTTCAGTCACTTCCTGCAGTTTTCTTCTTCTATGATCTTTCTCCCATCAAGGTTGGTTTTTCTTACATGTTCAATTTGTGATGAAATGGAAGATTAACTTTTCGTTACTCTTATAGCTGTTCTGTTTTGTATGTTATAGGTCACATTCACCGAGGAGCACGTGTCATTCCTCCACTTCCTGACAAATGTATGCGCTATAGTTGGAGGTACTTAACAAACTCCCATCCTCTCGAATTGCTTTACTTCATTTATTTGGTACTGACCTCGTTACATCTTTATATTGAATCGATTGTAGGTAGTACATTGCCATTTCCCTTGGTAAAGGATACGAAATAACATCATTATGTTTCATAATTAAGTCGGGCATAGTTTTCATTCTTCTTAGCTAGCTTAACTATGCTTATTGAGCCGTATGACTAACCGAGGAAAATGCTTTCATGGTGGTTCGATCCAGGCGTGTTCACGGTCTCAGGAATATTAGATTCATTCATATATCATGGTCAGAAGGTGATCAAGAAAAAGATGGAGCTTGGTAAGTTCAGCTGATAATTGAGCTCGATCTATTTGAGGTGTCGATGCTGCTTATGAAGCCCGGCAGCAAATTACAACTGTGAGATGATGATCAAATCAAGAGAAGAATGAAATGGTTCGATGGCTGTATTCAATTATGGATGAAGTTTGTTGCCATGATTTTAGTGAGAGTTAGAAAGGAAGGAGCTTAGCTTAGCTCTCCCAGCTCTGTTTCATATTTAAAAAAGAAAAACCACTTGTTTACAGTTTAACGAGTCCTTTTAACTGTCGTAGTAAATGTGAATATCCCACATGAAGAGGTAAAAGACAGGATTCTCATCATCCCCACCACCACCATTGGATTTCTTTTTGTCATAGGTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTT

mRNA sequence

ATGAATTGGATGGGTGGATTAGGATGCAATATTACTATAACTGTTGCAAATTTTTGGAGGTTATCAGTAAAAAGCGTCCTGCCTGGAAATTTTCACTTTGCACCTGGGAAAAGCTTTAAGTCCGATGTTCATAGGGTTGTACCAACTGTTTACAAGGATGTTAGCGGGAATACCATCCAGTCAAACCAGTTCTCTGTCACAGAACATGTAAGGACTGCAGAAGTTGGACGGCTTCAGTCACTTCCTGCAGTTTTCTTCTTCTATGATCTTTCTCCCATCAAGGTCACATTCACCGAGGAGCACGTGTCATTCCTCCACTTCCTGACAAATGTATGCGCTATAGTTGGAGGCGTGTTCACGGTCTCAGGAATATTAGATTCATTCATATATCATGGTCAGAAGGTGATCAAGAAAAAGATGGAGCTTGGTAAGTTCAGCTGATAATTGAGCTCGATCTATTTGAGGTGTCGATGCTGCTTATGAAGCCCGGCAGCAAATTACAACTGTGAGATGATGATCAAATCAAGAGAAGAATGAAATGGTTCGATGGCTGTATTCAATTATGGATGAAGTTTGTTGCCATGATTTTAGTGAGAGTTAGAAAGGAAGGAGCTTAGCTTAGCTCTCCCAGCTCTGTTTCATATTTAAAAAAGAAAAACCACTTGTTTACAGTTTAACGAGTCCTTTTAACTGTCGTAGTAAATGTGAATATCCCACATGAAGAGGTAAAAGACAGGATTCTCATCATCCCCACCACCACCATTGGATTTCTTTTTGTCATAGGTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTT

Coding sequence (CDS)

ATGAATTGGATGGGTGGATTAGGATGCAATATTACTATAACTGTTGCAAATTTTTGGAGGTTATCAGTAAAAAGCGTCCTGCCTGGAAATTTTCACTTTGCACCTGGGAAAAGCTTTAAGTCCGATGTTCATAGGGTTGTACCAACTGTTTACAAGGATGTTAGCGGGAATACCATCCAGTCAAACCAGTTCTCTGTCACAGAACATGTAAGGACTGCAGAAGTTGGACGGCTTCAGTCACTTCCTGCAGTTTTCTTCTTCTATGATCTTTCTCCCATCAAGGTCACATTCACCGAGGAGCACGTGTCATTCCTCCACTTCCTGACAAATGTATGCGCTATAGTTGGAGGCGTGTTCACGGTCTCAGGAATATTAGATTCATTCATATATCATGGTCAGAAGGTGATCAAGAAAAAGATGGAGCTTGGTAAGTTCAGCTGA

Protein sequence

MNWMGGLGCNITITVANFWRLSVKSVLPGNFHFAPGKSFKSDVHRVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS

Homology

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BLAST of Carg09220-RA vs. NCBI nr
Match: XP_016569315.1 (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform X2 [Capsicum annuum])

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 109/154 (70.78%), Postives = 118/154 (76.62%), Query Frame = 0


Query: 6   GLGCNITITVANFWRLSVKSVLPGNFHFAPGKS-------------FKSDVHRVVPTVYK 65
           G GCN+      +  L V  V  GNFHFAPGKS             F+ D + VVPTVY 
Sbjct: 200 GEGCNM------YGFLEVNKV-AGNFHFAPGKSFQQSNVHVHDLLTFQKDSYNVVPTVYT 259

Query: 66  DVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVC 125
           DVSG+TIQSNQFSVTEH + A+VGR QS+P VFFFYDLSPIKVTFTE+HVSFLHFLTNVC
Sbjct: 260 DVSGHTIQSNQFSVTEHFKGADVGRFQSIPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVC 319

Query: 126 AIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           AIVGGVFTVSGILDSFIYHGQK IKKKMELGKFS
Sbjct: 320 AIVGGVFTVSGILDSFIYHGQKAIKKKMELGKFS 346

[Close]

BLAST of Carg09220-RA vs. NCBI nr
Match: XP_022962353.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita moschata] >XP_023546715.1 endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF
Sbjct: 285 KVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS
Sbjct: 345 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 386

[Close]

BLAST of Carg09220-RA vs. NCBI nr
Match: XP_022997179.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF
Sbjct: 285 KVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS
Sbjct: 345 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 386

[Close]

BLAST of Carg09220-RA vs. NCBI nr
Match: XP_023001967.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita maxima])

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVYKDVSGNTIQSNQFSVTEHV+TAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF
Sbjct: 285 KVVPTVYKDVSGNTIQSNQFSVTEHVKTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGGVFTVSGILDSF+YHGQKVIKKKMELGKFS
Sbjct: 345 LHFLTNVCAIVGGVFTVSGILDSFVYHGQKVIKKKMELGKFS 386

[Close]

BLAST of Carg09220-RA vs. NCBI nr
Match: XP_023537286.1 (endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVYKDVSGNTIQSNQFSVTEHV+TAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF
Sbjct: 285 KVVPTVYKDVSGNTIQSNQFSVTEHVKTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGGVFTVSGILDSF+YHGQKVIKKKMELGKFS
Sbjct: 345 LHFLTNVCAIVGGVFTVSGILDSFVYHGQKVIKKKMELGKFS 386

[Close]

BLAST of Carg09220-RA vs. TAIR10
Match: AT1G36050.1 (Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 181.4 bits (459), Expect = 4.0e-46
Identity = 104/190 (54.74%), Postives = 117/190 (61.58%), Query Frame = 0


Query: 6   GLGCNITITVANFWRLSVKSVLPGNFHFAPGKSF-KSDVH-------------------- 65
           G GCNI      +  L V  V  GNFHFAPGKSF +S VH                    
Sbjct: 200 GEGCNI------YGFLEVNKV-AGNFHFAPGKSFHQSGVHVHDLLAFQKDSFNISHKINR 259

Query: 66  --------------------------------RVVPTVYKDVSGNTIQSNQFSVTEHVRT 125
                                           +VVPTVY D+ G+TIQSNQFSVTEHV++
Sbjct: 260 LTYGDYFPGVVNPLDKVEWSQDTPNAMYQYFIKVVPTVYTDIRGHTIQSNQFSVTEHVKS 319

Query: 126 AEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHG 143
           +E G+LQSLP VFFFYDLSPIKVTFTEEH+SFLHFLTNVCAIVGGVFTVSGI+D+FIYHG
Sbjct: 320 SEAGQLQSLPGVFFFYDLSPIKVTFTEEHISFLHFLTNVCAIVGGVFTVSGIIDAFIYHG 379

[Close]

BLAST of Carg09220-RA vs. TAIR10
Match: AT1G22200.1 (Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.7e-41
Identity = 77/102 (75.49%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVP++Y DV  NTIQSNQFSVTEH +  E GR+QS P VFF+YDLSPIKV F E+HV F
Sbjct: 285 KVVPSIYTDVHQNTIQSNQFSVTEHFQNMEAGRMQSPPGVFFYYDLSPIKVIFEEQHVEF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGG+FTVSGI+DSFIYHGQ+ IKKKME+GKF+
Sbjct: 345 LHFLTNVCAIVGGIFTVSGIVDSFIYHGQRAIKKKMEIGKFN 386

[Close]

BLAST of Carg09220-RA vs. TAIR10
Match: AT3G22290.1 (Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           ++VPT Y+ +S + + +NQ+SVTE+  T      ++ PAV+F YDLSPI VT  EE  SF
Sbjct: 256 KIVPTEYRYLSKDVLSTNQYSVTEYF-TPMTEFDRTWPAVYFLYDLSPITVTIKEERRSF 315

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKK 140
           LH +T +CA++GG F ++G+LD +++   +   KK
Sbjct: 316 LHLITRLCAVLGGTFALTGMLDRWMFRFIESFNKK 349

[Close]

BLAST of Carg09220-RA vs. TAIR10
Match: AT4G27080.2 (PDI-like 5-4)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 68  EHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDS 127
           E+   + V     LP   F ++LSP++V  TE   SF HF+TNVCAI+GGVFTV+GILDS
Sbjct: 455 EYTAHSSVAHSYYLPVAKFHFELSPMQVLITENSKSFSHFITNVCAIIGGVFTVAGILDS 514

Query: 128 FIYHGQKVIKKKMELGK 145
            ++H    + KK+ELGK
Sbjct: 515 ILHHSM-TLMKKIELGK 530

[Close]

BLAST of Carg09220-RA vs. TAIR10
Match: AT3G20560.1 (PDI-like 5-3)

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-15
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 68  EHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDS 127
           E+   + V +   LP   F ++LSP+++  TE   SF HF+TN+CAI+GGVFTV+GILDS
Sbjct: 406 EYTAHSSVAQTYYLPVAKFHFELSPMQILITENPKSFSHFITNLCAIIGGVFTVAGILDS 465

Query: 128 FIYHGQKVIKKKMELGK 145
            I+H    + KK+ELGK
Sbjct: 466 -IFHNTVRLVKKVELGK 481

[Close]

BLAST of Carg09220-RA vs. Swiss-Prot
Match: sp|Q9Y282|ERGI3_HUMAN (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens OX=9606 GN=ERGIC3 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRL--QSLPAVFFFYDLSPIKVTFTEEHV 104
           +VVPTVY  V G  +++NQFSVT H + A  G L  Q LP VF  Y+LSP+ V  TE+H 
Sbjct: 281 KVVPTVYMKVDGEVLRTNQFSVTRHEKVAN-GLLGDQGLPGVFVLYELSPMMVKLTEKHR 340

Query: 105 SFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGK 145
           SF HFLT VCAI+GG+FTV+G++DS IYH  + I+KK++LGK
Sbjct: 341 SFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

[Close]

BLAST of Carg09220-RA vs. Swiss-Prot
Match: sp|Q4R8X1|ERGI3_MACFA (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis OX=9541 GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRL--QSLPAVFFFYDLSPIKVTFTEEHV 104
           +VVPTVY  V G  +++NQFSVT H + A  G L  Q LP VF  Y+LSP+ V  TE+H 
Sbjct: 280 KVVPTVYMKVDGEVLRTNQFSVTRHEKVAN-GLLGDQGLPGVFVLYELSPMMVKLTEKHR 339

Query: 105 SFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGK 145
           SF HFLT VCAI+GG+FTV+G++DS IYH  + I+KK++LGK
Sbjct: 340 SFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 380

[Close]

BLAST of Carg09220-RA vs. Swiss-Prot
Match: sp|Q9CQE7|ERGI3_MOUSE (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus OX=10090 GN=Ergic3 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRL--QSLPAVFFFYDLSPIKVTFTEEHV 104
           +VVPTVY  V G  +++NQFSVT H + A  G L  Q LP VF  Y+LSP+ V  TE+H 
Sbjct: 281 KVVPTVYMKVDGEVLRTNQFSVTRHEKVAN-GLLGDQGLPGVFVLYELSPMMVKLTEKHR 340

Query: 105 SFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGK 145
           SF HFLT VCAI+GG+FTV+G++DS IYH  + I+KK++LGK
Sbjct: 341 SFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

[Close]

BLAST of Carg09220-RA vs. Swiss-Prot
Match: sp|Q5R8G3|ERGI3_PONAB (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii OX=9601 GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRL--QSLPAVFFFYDLSPIKVTFTEEHV 104
           +VVPTVY  V G  +++NQFSVT H + A  G L  Q LP VF  Y+LSP+ V  TE+H 
Sbjct: 281 KVVPTVYMKVDGEVLRTNQFSVTRHEKVAN-GLLGDQGLPGVFVLYELSPMMVKLTEKHR 340

Query: 105 SFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGK 145
           SF HFLT VCAI+GG+FTV+G++DS IYH  + I+KK++LGK
Sbjct: 341 SFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

[Close]

BLAST of Carg09220-RA vs. Swiss-Prot
Match: sp|Q5EAE0|ERGI3_BOVIN (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus OX=9913 GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRL--QSLPAVFFFYDLSPIKVTFTEEHV 104
           +VVPTVY  V G  +++NQFSVT H + A  G +  Q LP VF  Y+LSP+ V  TE+H 
Sbjct: 281 KVVPTVYMKVDGEVLRTNQFSVTRHEKVAN-GLMGDQGLPGVFVLYELSPMMVKLTEKHR 340

Query: 105 SFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGK 145
           SF HFLT VCAI+GG+FTV+G++DS IYH  + I+KK++LGK
Sbjct: 341 SFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381

[Close]

BLAST of Carg09220-RA vs. TrEMBL
Match: tr|A0A1U8GDY7|A0A1U8GDY7_CAPAN (endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform X2 OS=Capsicum annuum OX=4072 GN=LOC107867540 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 7.2e-50
Identity = 109/154 (70.78%), Postives = 118/154 (76.62%), Query Frame = 0


Query: 6   GLGCNITITVANFWRLSVKSVLPGNFHFAPGKS-------------FKSDVHRVVPTVYK 65
           G GCN+      +  L V  V  GNFHFAPGKS             F+ D + VVPTVY 
Sbjct: 200 GEGCNM------YGFLEVNKV-AGNFHFAPGKSFQQSNVHVHDLLTFQKDSYNVVPTVYT 259

Query: 66  DVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVC 125
           DVSG+TIQSNQFSVTEH + A+VGR QS+P VFFFYDLSPIKVTFTE+HVSFLHFLTNVC
Sbjct: 260 DVSGHTIQSNQFSVTEHFKGADVGRFQSIPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVC 319

Query: 126 AIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           AIVGGVFTVSGILDSFIYHGQK IKKKMELGKFS
Sbjct: 320 AIVGGVFTVSGILDSFIYHGQKAIKKKMELGKFS 346

[Close]

BLAST of Carg09220-RA vs. TrEMBL
Match: tr|A0A1S3BDC1|A0A1S3BDC1_CUCME (endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis melo OX=3656 GN=LOC103488406 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.9e-48
Identity = 98/102 (96.08%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTE HVSF
Sbjct: 285 KVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEGHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGG+FTVSGILDSFIYHGQKVIKKKME+GKFS
Sbjct: 345 LHFLTNVCAIVGGIFTVSGILDSFIYHGQKVIKKKMEIGKFS 386

[Close]

BLAST of Carg09220-RA vs. TrEMBL
Match: tr|G7KA80|G7KA80_MEDTR (Endoplasmic reticulum vesicle transporter OS=Medicago truncatula OX=3880 GN=11436099 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.8e-48
Identity = 115/194 (59.28%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 6   GLGCNITITVANFWRLSVKSVLPGNFHFAPGKSF-KSDVH-------------------- 65
           G GCN+      +  L V  V  GNFHFAPGKSF +S VH                    
Sbjct: 200 GEGCNV------YGFLEVNKV-AGNFHFAPGKSFQQSGVHVHDLLAFQKESFNLSHHINR 259

Query: 66  --------------------------------RVVPTVYKDVSGNTIQSNQFSVTEHVRT 125
                                           +VVPT+Y DVSGNTIQSNQFSVTEH RT
Sbjct: 260 IAFGDYFPGVVNPLDRVHWTQETPSGMYQYFIKVVPTMYTDVSGNTIQSNQFSVTEHFRT 319

Query: 126 AEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHG 147
           A+VGRLQSLP VFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGG+FTVSGILDSFIYHG
Sbjct: 320 ADVGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGIFTVSGILDSFIYHG 379

[Close]

BLAST of Carg09220-RA vs. TrEMBL
Match: tr|A0A0A0LJU3|A0A0A0LJU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G307840 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.4e-47
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 45  RVVPTVYKDVSGNTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 104
           +VVPTVY  VSG TIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF
Sbjct: 285 KVVPTVYNSVSGYTIQSNQFSVTEHVRTAEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSF 344

Query: 105 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMELGKFS 147
           LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKME+GKFS
Sbjct: 345 LHFLTNVCAIVGGVFTVSGILDSFIYHGQKVIKKKMEIGKFS 386

[Close]

BLAST of Carg09220-RA vs. TrEMBL
Match: tr|A0A1U8J1Q1|A0A1U8J1Q1_GOSHI (endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107900893 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 114/194 (58.76%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 6   GLGCNITITVANFWRLSVKSVLPGNFHFAPGKSF-KSDVH-------------------- 65
           G GCNI      +  L V  V  GNFHFAPGKSF +S+VH                    
Sbjct: 200 GEGCNI------YGFLEVNKV-AGNFHFAPGKSFQQSNVHVHDLLAFQKESFNLSHRINR 259

Query: 66  --------------------------------RVVPTVYKDVSGNTIQSNQFSVTEHVRT 125
                                           +VVPTVY DVSG+TIQSNQFSVTEH + 
Sbjct: 260 LAFGDYFPGVVNPLDSVHWTQEQPSGMYQYFLKVVPTVYTDVSGHTIQSNQFSVTEHFKG 319

Query: 126 AEVGRLQSLPAVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHG 147
           AEVGRLQSLP VFFFYDLSPIKVTFTE+HVSFLHFLTNVCAIVGGVFTVSGILDSFIYHG
Sbjct: 320 AEVGRLQSLPGVFFFYDLSPIKVTFTEQHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHG 379

The following BLAST results are available for this feature:

BLAST of Carg09220-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016569315.1	1.1e-49	70.78	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like i...	[more]
XP_022962353.1	4.1e-49	99.02	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita m...	[more]
XP_022997179.1	4.1e-49	99.02	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita m...	[more]
XP_023001967.1	1.2e-48	97.06	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita m...	[more]
XP_023537286.1	1.2e-48	97.06	endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucurbita p...	[more]

BLAST of Carg09220-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36050.1	4.0e-46	54.74	Endoplasmic reticulum vesicle transporter protein	[more]
AT1G22200.1	1.7e-41	75.49	Endoplasmic reticulum vesicle transporter protein	[more]
AT3G22290.1	1.1e-16	43.16	Endoplasmic reticulum vesicle transporter protein	[more]
AT4G27080.2	1.6e-15	50.65	PDI-like 5-4	[more]
AT3G20560.1	8.1e-15	49.35	PDI-like 5-3	[more]

BLAST of Carg09220-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9Y282\|ERGI3_HUMAN	7.4e-26	56.86	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens O...	[more]
sp\|Q4R8X1\|ERGI3_MACFA	7.4e-26	56.86	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicu...	[more]
sp\|Q9CQE7\|ERGI3_MOUSE	7.4e-26	56.86	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus O...	[more]
sp\|Q5R8G3\|ERGI3_PONAB	7.4e-26	56.86	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii O...	[more]
sp\|Q5EAE0\|ERGI3_BOVIN	1.3e-25	55.88	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus OX=...	[more]

BLAST of Carg09220-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U8GDY7\|A0A1U8GDY7_CAPAN	7.2e-50	70.78	endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform X2 O...	[more]
tr\|A0A1S3BDC1\|A0A1S3BDC1_CUCME	3.9e-48	96.08	endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Cucumis m...	[more]
tr\|G7KA80\|G7KA80_MEDTR	8.8e-48	59.28	Endoplasmic reticulum vesicle transporter OS=Medicago truncatula OX=3880 GN=1143...	[more]
tr\|A0A0A0LJU3\|A0A0A0LJU3_CUCSA	7.4e-47	95.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G307840 PE=4 SV=1	[more]
tr\|A0A1U8J1Q1\|A0A1U8J1Q1_GOSHI	1.3e-46	58.76	endoplasmic reticulum-Golgi intermediate compartment protein 3-like OS=Gossypium...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012936	Erv_C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09220	Carg09220	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09220-RA	Carg09220-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09220-RA.exon.1	Carg09220-RA.exon.1	exon
Carg09220-RA.exon.2	Carg09220-RA.exon.2	exon
Carg09220-RA.exon.3	Carg09220-RA.exon.3	exon
Carg09220-RA.exon.4	Carg09220-RA.exon.4	exon
Carg09220-RA.exon.5	Carg09220-RA.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09220-RA.CDS.1	Carg09220-RA.CDS.1	CDS
Carg09220-RA.CDS.2	Carg09220-RA.CDS.2	CDS
Carg09220-RA.CDS.3	Carg09220-RA.CDS.3	CDS
Carg09220-RA.CDS.4	Carg09220-RA.CDS.4	CDS
Carg09220-RA.CDS.5	Carg09220-RA.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09220-RA.three_prime_UTR.1	Carg09220-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012936	Endoplasmic reticulum vesicle transporter, C-terminal	PFAM	PF07970	COPIIcoated_ERV	coord: 45..126 e-value: 1.1E-26 score: 93.9
None	No IPR available	PANTHER	PTHR10984	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	coord: 45..146
None	No IPR available	PANTHER	PTHR10984:SF50	ENDOPLASMIC RETICULUM VESICLE TRANSPORTER PROTEIN	coord: 45..146