Carg07734-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCAAACGGCGCCGTTTAGTTCCTCTAATTTGGAACGGTTTCTTCAATGCGTTACTCCTTGCGTTCCTTGGCGAACTCTTCCTCGGGTAAAAATAAATAAATAAATATATATTCAGCATTTTATTTTCTTTAATTATTTAATTATTATTTATTATTTCATTATAAATCCTACATTTTCCCCCTTTCCCTCCATTATAATTTTTCATTTATTTATTTCTGAATTTATATCTGCAAAACCATGTGACTCACGATGTGGATAATTTTTATTATATAATTATTTCAATTTCCACCTCAACCCTAATTTTGGAAATTGAAAATTCCCCCATTTTCCACCACCAATATAATTTTCTCCATTTCCCCATGGTCAGCTTTATTTATTTATTTATTAAATAAAATAAAACTAAATCATGGAAAGGAATTAACAAAAAGTTCATTCTTAAATTTCTTTCCATATCTTAATTTTACGCAAATTTCTTTCCATAACAAATTATTAATGTAGTGGGCCCTTAATGGGCCGACGTAAGTCATAATTATTATTTATTTAAAGATTTAATGTCATTTTTTGAAGCTCAATTTAACTTAGATAAATAAGCAAATTTATTATTTTTGTCGAAGTTGGCCCCACCCTTATCATCAGAATTTCTTATTTTTGTCATTTGCTTGAAAAATAAATTAAATAGATAGGACATACGACATGTTTTCAAATGTCTCGTCATTACAAGTCTTTCCTCTGCGCCACGTGGCATTTGATTATTTTTTAAGTTTTTTTTTTTTTTTTTTTTTTCGGCCATGAATAAATACTTTCATAAATTAAATTTCATTGTTGTGGGTCATCGAAAAAATTGTCAAGTGTCTTTAACGTTGAAGTCTTCAAAATGAGATTTAATGGCTTTTGATCTTTTTTGCTCATTTATTGATGATATCGCTGCATGTTATCCCTTTGATTGCTTCCTCTAAGCCTATGATGTTTCTTTTCCTTATAGAGTTGTCTTCATGATCTCAATAGTCAGTGGCAACAACCTGATAAAGATACCATTCGGTACTTCACGCTTGGTGAGCTGTGGGATTACTACGATGAATGGAGTGCATATGGTGCTGGTATACCATTACAGTTGAATGCTTTTGAAACTGCTACCCAATTCTACGTGCCTTATCTGTCTGCAATTCAGATCTACACAAGCAAGTCTGTTCCAGCTTCCAGGTATACTGAAGCAACTTTCATTTCCTTCTGCTGCCTTTGAAGTTTGAAAATTGTGAGATCCCATGCTGGTTGGGGAGGGAAACAAAACACTCTTTATAAGGGTATGGAAACCTCTCCCTGGCAAATGTGTTTTAAAACCGTGAGGCTAACGACAGTACGTAATGAGCTAAAGCGGACAATATTTGCTAACGGTGGACTACTGGGGCTGTTACAAATGGTATCAAAGCCAGACATTTGGCAGTGTGCCAGTGAGGACGTTGGGCCCTCAAAGGGGGTAGATTGTGATATCACACATTGGTTGGGGAGGAGAACAAAACACTCCTTATAAGGGTGTTGAAACCTCTTCATAGCAGACGCGTATTGAAACCATAAGGCTGATGGCGATAGTAACAAGCCAAAGTGGACAATATCTGCTAACGGTGGGCTTGAGCTGTTACAAATGGTATCAGAGTCAGTCACCGGATGGTGCAAGACACTGGTCGGAGTAGGGCTAGACGCTCTTCATAGTAGACGCATTTTAAAACCTTGAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCTAGCGATGGGCTTGGACTGTTACAAATGGTCTCAGAGCTAGGCACTGGACGGTGTGCCAACGAGGACATTTGCTCCTAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGGAGCACTCCTTATATGGGTGTGGAAACCTCTCTGTAGTAGACGTGTTTTAAAAACATGAGGCTGACAGCGATACTTAATGGGTCAAAGCGGATAATATCTGCTAGCGGAAAAACTGATATGTTTCTTTTTGACAAATGGTTGTTTATTGGAATTTATGAAAGAGGGAATATTAGTGTGAGTTTTAAAGGAACTGTTTGATATACAATTTAGTTTTTAGTGCATTGTGTTGCAAATAAGCTATATTTGTTCGAGTTGTGTGTGTAGAAGCCGAAGATATGATAGTGACATGGCAGAATGTGAAAGCGATTCTTGGAGTGACGATAGCTGGAGTGATATCTTGTCAAGATCCCTGAGCAACAACTCTAGCAGGACATGGGATGCTGTTTCTGAAGATTCGATCTTCGACCAGGAGGGATCGTGGCCGCTGAGGGAAAAACTTGGCTACCTCTCTTTACAGTATATGGAGATGTCTTCTCCTTATTGGAGAGTGCCTTTTATGGACAAGGTAGATCCTTCGTTGTTCTAAATTGATCATGGTATTTATCTTCACGGATAGAAACTGATGTTTTCAAATTTAACAGCTCTATATTTGTCGATAAGCCTTCGATAGAAGATCAAAAGATATTTTTGATATTCAAATGAAAAAAGAAAATAGGTGGAATTTAGATGGTCGAGTACTGCAAGAACACATAAAGCATTGAAGAAGTGTAAAATGATATTATCAGCATCTTCTTCTTTGCTTATGTTAGACGATCTGCATTTCAGATAAGGGAACTAACTCAAAACTATCCAGCACTAACTACACTTAGGAGTGTGGATCTTTCTCCAGCTAGTTGGATGGCTGTTTCCTGGTAAAATTCGCCTTCCCTATCGACCGATCCACGCAAAAGCTTATTTGCCGTTTCCTTTTGCCTTATTGGTTCTGTTCAATGCTTTTAACTTGATTCAGGTACCCTATTTATCATATCCCTAGTCAGAAAAACGACAAAGACTTCGCAACGTGCTTTCTAACGTATCATACATTGTCATCATCTTTTCAAGGTGTGGGACTATCAATGTTTCTTTTCAGAAATGTTATGAACCAATATCTGTCTATACACTACAAAGTTAAATGTTTGATGACTGCAGATTGCTCTATGGATCATGAAGGGCAAGATGGATGTAGTTGTTCCGAATCCGATACCGGGGGTCAAATCGATGGCAAAACTAGTACTTCTACTTCTACTAGCCTTTCTCCATTTGGGTTAGCCACTTATAGAATGCAGGGAGACCTCTGGTTGAAGCCAGACACGTCTGACTACGACCGAATCGTCGATCTCTATCATGCAGCTGATTCATGGTTGAAGCAGCTCGGCGTCCAGCATCACGACTTCAACTTCTTTTCCCTGCACTCGAGCATGTAAATAATCAGTTTCCATTTCGTAGGCTGGCTTACTGATTCTCCTTCATGCAGGTTGTATATTTCTGTTCATGCTTTTGCAACCAACATGAGAAGCTCTTACCTCTGCCTCTGCTCACTGCAGTTCATTTCACAGTTAGAAAACCAGGAGTTTTGATTCAAAACCAACGCTTTTGTACTTTTTGCTCATGAAAAATGATGAGCATTGCTGTGGTTTAATAGCAGAGGCATGGCTGAGGGGTTTTTT ATGTCTCAAACGGCGCCGTTTAGTTCCTCTAATTTGGAACGGTTTCTTCAATGCGTTACTCCTTGCGTTCCTTGGCGAACTCTTCCTCGGAGTTGTCTTCATGATCTCAATAGTCAGTGGCAACAACCTGATAAAGATACCATTCGGTACTTCACGCTTGGTGAGCTGTGGGATTACTACGATGAATGGAGTGCATATGGTGCTGGTATACCATTACAGTTGAATGCTTTTGAAACTGCTACCCAATTCTACGTGCCTTATCTAAGCCGAAGATATGATAGTGACATGGCAGAATGTGAAAGCGATTCTTGGAGTGACGATAGCTGGAGTGATATCTTGTCAAGATCCCTGAGCAACAACTCTAGCAGGACATGGGATGCTGTTTCTGAAGATTCGATCTTCGACCAGGAGGGATCGTGGCCGCTGAGGGAAAAACTTGGCTACCTCTCTTTACAGTATATGGAGATGTCTTCTCCTTATTGGAGAGTGCCTTTTATGGACAAGATAAGGGAACTAACTCAAAACTATCCAGCACTAACTACACTTAGGAGTGTGGATCTTTCTCCAGCTAGTTGGATGGCTGTTTCCTGGTACCCTATTTATCATATCCCTAGTCAGAAAAACGACAAAGACTTCGCAACGTGCTTTCTAACGTATCATACATTGTCATCATCTTTTCAAGATTGCTCTATGGATCATGAAGGGCAAGATGGATGTAGTTGTTCCGAATCCGATACCGGGGGTCAAATCGATGGCAAAACTAGTACTTCTACTTCTACTAGCCTTTCTCCATTTGGGTTAGCCACTTATAGAATGCAGGGAGACCTCTGGTTGAAGCCAGACACGTCTGACTACGACCGAATCGTCGATCTCTATCATGCAGCTGATTCATGGTTGAAGCAGCTCGGCGTCCAGCATCACGACTTCAACTTCTTTTCCCTGCACTCGAGCATGTAAATAATCAGTTTCCATTTCGTAGGCTGGCTTACTGATTCTCCTTCATGCAGGTTGTATATTTCTGTTCATGCTTTTGCAACCAACATGAGAAGCTCTTACCTCTGCCTCTGCTCACTGCAGTTCATTTCACAGTTAGAAAACCAGGAGTTTTGATTCAAAACCAACGCTTTTGTACTTTTTGCTCATGAAAAATGATGAGCATTGCTGTGGTTTAATAGCAGAGGCATGGCTGAGGGGTTTTTT ATGTCTCAAACGGCGCCGTTTAGTTCCTCTAATTTGGAACGGTTTCTTCAATGCGTTACTCCTTGCGTTCCTTGGCGAACTCTTCCTCGGAGTTGTCTTCATGATCTCAATAGTCAGTGGCAACAACCTGATAAAGATACCATTCGGTACTTCACGCTTGGTGAGCTGTGGGATTACTACGATGAATGGAGTGCATATGGTGCTGGTATACCATTACAGTTGAATGCTTTTGAAACTGCTACCCAATTCTACGTGCCTTATCTAAGCCGAAGATATGATAGTGACATGGCAGAATGTGAAAGCGATTCTTGGAGTGACGATAGCTGGAGTGATATCTTGTCAAGATCCCTGAGCAACAACTCTAGCAGGACATGGGATGCTGTTTCTGAAGATTCGATCTTCGACCAGGAGGGATCGTGGCCGCTGAGGGAAAAACTTGGCTACCTCTCTTTACAGTATATGGAGATGTCTTCTCCTTATTGGAGAGTGCCTTTTATGGACAAGATAAGGGAACTAACTCAAAACTATCCAGCACTAACTACACTTAGGAGTGTGGATCTTTCTCCAGCTAGTTGGATGGCTGTTTCCTGGTACCCTATTTATCATATCCCTAGTCAGAAAAACGACAAAGACTTCGCAACGTGCTTTCTAACGTATCATACATTGTCATCATCTTTTCAAGATTGCTCTATGGATCATGAAGGGCAAGATGGATGTAGTTGTTCCGAATCCGATACCGGGGGTCAAATCGATGGCAAAACTAGTACTTCTACTTCTACTAGCCTTTCTCCATTTGGGTTAGCCACTTATAGAATGCAGGGAGACCTCTGGTTGAAGCCAGACACGTCTGACTACGACCGAATCGTCGATCTCTATCATGCAGCTGATTCATGGTTGAAGCAGCTCGGCGTCCAGCATCACGACTTCAACTTCTTTTCCCTGCACTCGAGCATGTAA MSQTAPFSSSNLERFLQCVTPCVPWRTLPRSCLHDLNSQWQQPDKDTIRYFTLGELWDYYDEWSAYGAGIPLQLNAFETATQFYVPYLSRRYDSDMAECESDSWSDDSWSDILSRSLSNNSSRTWDAVSEDSIFDQEGSWPLREKLGYLSLQYMEMSSPYWRVPFMDKIRELTQNYPALTTLRSVDLSPASWMAVSWYPIYHIPSQKNDKDFATCFLTYHTLSSSFQDCSMDHEGQDGCSCSESDTGGQIDGKTSTSTSTSLSPFGLATYRMQGDLWLKPDTSDYDRIVDLYHAADSWLKQLGVQHHDFNFFSLHSSM
BLAST of Carg07734-RA vs. NCBI nr
Match: XP_023519160.1 (uncharacterized protein LOC111782609 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519161.1 uncharacterized protein LOC111782609 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 639.0 bits (1647), Expect = 8.3e-180 Identity = 314/333 (94.29%), Postives = 317/333 (95.20%), Query Frame = 0
BLAST of Carg07734-RA vs. NCBI nr
Match: XP_022923969.1 (uncharacterized protein LOC111431528 isoform X1 [Cucurbita moschata] >XP_022923970.1 uncharacterized protein LOC111431528 isoform X1 [Cucurbita moschata]) HSP 1 Score: 637.1 bits (1642), Expect = 3.2e-179 Identity = 316/333 (94.89%), Postives = 316/333 (94.89%), Query Frame = 0
BLAST of Carg07734-RA vs. NCBI nr
Match: XP_023001164.1 (uncharacterized protein LOC111495384 isoform X1 [Cucurbita maxima] >XP_023001165.1 uncharacterized protein LOC111495384 isoform X1 [Cucurbita maxima]) HSP 1 Score: 634.4 bits (1635), Expect = 2.1e-178 Identity = 310/333 (93.09%), Postives = 311/333 (93.39%), Query Frame = 0
BLAST of Carg07734-RA vs. NCBI nr
Match: XP_004137643.2 (PREDICTED: uncharacterized protein LOC101213420 [Cucumis sativus] >KGN64231.1 hypothetical protein Csa_1G044320 [Cucumis sativus]) HSP 1 Score: 577.0 bits (1486), Expect = 3.9e-161 Identity = 282/339 (83.19%), Postives = 295/339 (87.02%), Query Frame = 0
BLAST of Carg07734-RA vs. NCBI nr
Match: XP_023519162.1 (uncharacterized protein LOC111782609 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 576.2 bits (1484), Expect = 6.6e-161 Identity = 285/303 (94.06%), Postives = 287/303 (94.72%), Query Frame = 0
BLAST of Carg07734-RA vs. TAIR10
Match: AT1G17830.1 (Protein of unknown function (DUF789)) HSP 1 Score: 303.9 bits (777), Expect = 1.2e-82 Identity = 162/323 (50.15%), Postives = 211/323 (65.33%), Query Frame = 0
BLAST of Carg07734-RA vs. TAIR10
Match: AT1G73210.1 (Protein of unknown function (DUF789)) HSP 1 Score: 294.3 bits (752), Expect = 9.1e-80 Identity = 163/321 (50.78%), Postives = 206/321 (64.17%), Query Frame = 0
BLAST of Carg07734-RA vs. TAIR10
Match: AT1G03610.1 (Protein of unknown function (DUF789)) HSP 1 Score: 289.3 bits (739), Expect = 2.9e-78 Identity = 152/317 (47.95%), Postives = 195/317 (61.51%), Query Frame = 0
BLAST of Carg07734-RA vs. TAIR10
Match: AT4G03420.1 (Protein of unknown function (DUF789)) HSP 1 Score: 283.1 bits (723), Expect = 2.1e-76 Identity = 153/318 (48.11%), Postives = 197/318 (61.95%), Query Frame = 0
BLAST of Carg07734-RA vs. TAIR10
Match: AT4G28150.1 (Protein of unknown function (DUF789)) HSP 1 Score: 256.1 bits (653), Expect = 2.8e-68 Identity = 139/306 (45.42%), Postives = 177/306 (57.84%), Query Frame = 0
BLAST of Carg07734-RA vs. TrEMBL
Match: tr|A0A0A0LW14|A0A0A0LW14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G044320 PE=4 SV=1) HSP 1 Score: 577.0 bits (1486), Expect = 2.6e-161 Identity = 282/339 (83.19%), Postives = 295/339 (87.02%), Query Frame = 0
BLAST of Carg07734-RA vs. TrEMBL
Match: tr|A0A1S3ATR9|A0A1S3ATR9_CUCME (uncharacterized protein LOC103482746 OS=Cucumis melo OX=3656 GN=LOC103482746 PE=4 SV=1) HSP 1 Score: 574.7 bits (1480), Expect = 1.3e-160 Identity = 282/339 (83.19%), Postives = 295/339 (87.02%), Query Frame = 0
BLAST of Carg07734-RA vs. TrEMBL
Match: tr|A0A2P4JIH0|A0A2P4JIH0_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_04869 PE=4 SV=1) HSP 1 Score: 420.2 bits (1079), Expect = 4.0e-114 Identity = 205/328 (62.50%), Postives = 244/328 (74.39%), Query Frame = 0
BLAST of Carg07734-RA vs. TrEMBL
Match: tr|A0A067ELQ5|A0A067ELQ5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g019725mg PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 3.3e-108 Identity = 193/326 (59.20%), Postives = 237/326 (72.70%), Query Frame = 0
BLAST of Carg07734-RA vs. TrEMBL
Match: tr|A0A2I4H5X0|A0A2I4H5X0_9ROSI (uncharacterized protein LOC109013782 OS=Juglans regia OX=51240 GN=LOC109013782 PE=4 SV=1) HSP 1 Score: 400.2 bits (1027), Expect = 4.3e-108 Identity = 201/337 (59.64%), Postives = 240/337 (71.22%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
|