Carg07520-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07520-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor ILR3-like
Location	Cucurbita_argyrosperma_scaffold_024 : 44336 .. 46386 (+)
Sequence length	1069

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGTCTGAATTCACGGATTGGGTGTTCGATTACGGCGCGATTGATGACATCCCTGTCCCCGGCGGCGACCTACCTTCACTGGATCTTCCTGCTTTCGCTTTGCCTTCTCGCGATTTCACTGCCTCCTTCAGGTTTTTCTTTTTTCGCTTTTGAATTTCTTTTTGGTTGATTGTATGTCGTTGATATGAACACAAACACCACTCTAAATCACTGTATGTCTCAAATAAACTATTCAAACTTGTCAAAATGAATTTGATATAGTAAATAACAAATTGAGCTTTAACTTAGTGTTTGGTACGTCTATATAGATTAATAAGGTAATAGTCCAAGTCCAAGTCCAGTCCACTGCCAGTAGAAATTGTTAGCTTTAGTTTGTTGAGTATAGCTGTCAGCCTCACGATTTTAGAACGCTTTTAGGGAATAGCGTCTTCATTCGCGCACCTCTCACAATCCACCTCCCATGAGGGCTACCGTCCTCGTTGACACACCACTTAGTGCTTGCTGATATTATATGTCACAGTCCAATATTATATGTAACAGTCCGGCTTTCACTTCTAGGTTTTCCTCAAGGTTTTTTTATTAAAACGCATCTATTAGGGAGAAGTTTCCACACCCTTATAAAAGATGTTTCATTGCCCTCTCCAATCGAAGTGTGATCTCACAAAAAATGTCGAATAAATTTCAAATGGATCTATTGAAAACAACTTTTGAAGTTTAGAGACCATATGACAAACTTAAAAGTTTAGAGACGAAACGTGTAATTTAAACTTATATCTCGGGAAAGAACTCAGTCTTCTTAATGTTTCAGGGCAGATTTTGATGAGCCACTCGAAATGCCAGACGACATAAAGGAATCTGGATCCAGAAAAAGGTGAGCAATTATTGATTCCCAACTTTAGGGGACAATTAGCATCATTGTTTATGTAGTAAAGCTGTGGCATTGAATTTAAGCATATTGGATATGCCCTTTCAAGAACATGGTAGTGTTGTTACTGTTGACAGGATGAGCAGCTCTGGATCAAATGCATTTGGATCCAAGGCACATAAAGAGAAAATGCGAAGGGATAAACTAAATGACAGGCATCTAAATTCTATTACATTCATCGTTTTCGCCATTCTCGTCTCGTATCGGCTCTGCTCCATCCCGACCTCATGTTTTCTCTTTGTCCATTAAAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACACCTAAGGGATGAGGCTCAGAAGCTTAAGGAATCTAATGAAACTTTTCTGGAGAAGATCAATGAAATGAAGGTGGATCTCCCTTTTTTCTATCATTCCCAAGTTCATATTTCCTATATTACAAGTTTTTGAAGTGAACACGAGACCGTTCGAGTATCATATTTTGGCTGAGTTTACGGTACGTCTTTTGTTTAGGCTGAAAAGAGTGAACTACGAGACGAGAAACAGAGGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGCGTTCAATACACAACCAAGCTTCTTGCCTCACCCTCCTGCATTTTCTTCTCCAAATCAGGTTGTTGGGGGCAAGTTGGTACCTGTGATTGGATATCCCGGAGTATCGATGTGGCAGTTCATGTCTCCGGGCGCCATCGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGAGTTGTCGGAGTTCATTGCTTCACCGGCTTCCCTTTTGAATGAGAGGATTCCTATGTATTTTCAAGATAGAATTGGCTGAATATCTGTTTTGTTAAACAAGTTTCTGCTGATCAAAATCAATGCAGGTCTGCTACAATAACAGTCTTCACCAATTCTGGTAATCTTATTTCCTTTCTTCATCTTCTCCTTCTGTTTGGGTTCTTGCCTAACTGTTCTTCAGCAGCTGACATTTCTGTAGAGATTTTGTGAAATAACCAACTATTTTCCTCGTCTTCAAACGACGTAAAAGGAAGAACATTTAGATCATCTTGATGACAGGTCTTAGGAT

mRNA sequence

ATGGCGTCGTCTGAATTCACGGATTGGGTGTTCGATTACGGCGCGATTGATGACATCCCTGTCCCCGGCGGCGACCTACCTTCACTGGATCTTCCTGCTTTCGCTTTGCCTTCTCGCGATTTCACTGCCTCCTTCAGGGCAGATTTTGATGAGCCACTCGAAATGCCAGACGACATAAAGGAATCTGGATCCAGAAAAAGGATGAGCAGCTCTGGATCAAATGCATTTGGATCCAAGGCACATAAAGAGAAAATGCGAAGGGATAAACTAAATGACAGGCATCTAAATTCTATTACATTCATCGTTTTCGCCATTCTCGTCTCGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACACCTAAGGGATGAGGCTCAGAAGCTTAAGGAATCTAATGAAACTTTTCTGGAGAAGATCAATGAAATGAAGGCTGAAAAGAGTGAACTACGAGACGAGAAACAGAGGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGCGTTCAATACACAACCAAGCTTCTTGCCTCACCCTCCTGCATTTTCTTCTCCAAATCAGGTTGTTGGGGGCAAGTTGGTACCTGTGATTGGATATCCCGGAGTATCGATGTGGCAGTTCATGTCTCCGGGCGCCATCGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGAGTTGTCGGAGTTCATTGCTTCACCGGCTTCCCTTTTGAATGAGAGGATTCCTATGTATTTTCAAGATAGAATTGGCTGAATATCTGTTTTGTTAAACAAGTTTCTGCTGATCAAAATCAATGCAGGTCTGCTACAATAACAGTCTTCACCAATTCTGGTAATCTTATTTCCTTTCTTCATCTTCTCCTTCTGTTTGGGTTCTTGCCTAACTGTTCTTCAGCAGCTGACATTTCTGTAGAGATTTTGTGAAATAACCAACTATTTTCCTCGTCTTCAAACGACGTAAAAGGAAGAACATTTAGATCATCTTGATGACAGGTCTTAGGAT

Coding sequence (CDS)

ATGGCGTCGTCTGAATTCACGGATTGGGTGTTCGATTACGGCGCGATTGATGACATCCCTGTCCCCGGCGGCGACCTACCTTCACTGGATCTTCCTGCTTTCGCTTTGCCTTCTCGCGATTTCACTGCCTCCTTCAGGGCAGATTTTGATGAGCCACTCGAAATGCCAGACGACATAAAGGAATCTGGATCCAGAAAAAGGATGAGCAGCTCTGGATCAAATGCATTTGGATCCAAGGCACATAAAGAGAAAATGCGAAGGGATAAACTAAATGACAGGCATCTAAATTCTATTACATTCATCGTTTTCGCCATTCTCGTCTCGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATCATACACCTAAGGGATGAGGCTCAGAAGCTTAAGGAATCTAATGAAACTTTTCTGGAGAAGATCAATGAAATGAAGGCTGAAAAGAGTGAACTACGAGACGAGAAACAGAGGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGCGTTCAATACACAACCAAGCTTCTTGCCTCACCCTCCTGCATTTTCTTCTCCAAATCAGGTTGTTGGGGGCAAGTTGGTACCTGTGATTGGATATCCCGGAGTATCGATGTGGCAGTTCATGTCTCCGGGCGCCATCGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA

Protein sequence

MASSEFTDWVFDYGAIDDIPVPGGDLPSLDLPAFALPSRDFTASFRADFDEPLEMPDDIKESGSRKRMSSSGSNAFGSKAHKEKMRRDKLNDRHLNSITFIVFAILVSFLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSELRDEKQRLKEAKDNLEQKMKAFNTQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHVLRPPVA

Homology

[Close]

BLAST of Carg07520-RA vs. NCBI nr
Match: XP_023519614.1 (transcription factor ILR3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 2.0e-88
Identity = 213/246 (86.59%), Postives = 214/246 (86.99%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           MASSEFTDWVFDYGAI+DIPVPGGDL  XXXXXXXXX RDFTASFRADFDE LEMPDDIK
Sbjct: 1   MASSEFTDWVFDYGAIEDIPVPGGDLXXXXXXXXXXXXRDFTASFRADFDEQLEMPDDIK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ESGSRKRMSSSGSNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESGSRKRMSSSGSNAFGSKAHKEKMRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX
Sbjct: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV 240
           XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV
Sbjct: 181 XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV 231

Query: 241 LRPPVA 247
           LRPPVA
Sbjct: 241 LRPPVA 231

[Close]

BLAST of Carg07520-RA vs. NCBI nr
Match: XP_023001300.1 (transcription factor ILR3-like [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 5.8e-88
Identity = 212/246 (86.18%), Postives = 213/246 (86.59%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           MASSEFTDWVFDYGAI+DIPVPGGDL  XXXXXXXXX RDFTASFRADFDE LEMPDDIK
Sbjct: 1   MASSEFTDWVFDYGAIEDIPVPGGDLXXXXXXXXXXXXRDFTASFRADFDEQLEMPDDIK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ESGSRKRMSSSGSNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESGSRKRMSSSGSNAFGSKAHKEKMRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX
Sbjct: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV 240
           XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPG IDTSQDHV
Sbjct: 181 XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGTIDTSQDHV 231

Query: 241 LRPPVA 247
           LRPPVA
Sbjct: 241 LRPPVA 231

[Close]

BLAST of Carg07520-RA vs. NCBI nr
Match: XP_022927529.1 (transcription factor ILR3-like [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 5.4e-86
Identity = 209/246 (84.96%), Postives = 210/246 (85.37%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           MASSEFTDWVFDYGAI+DIPVPGGDLPS XXXXXXXXSRDFTASFRADFDE LEMPDDIK
Sbjct: 1   MASSEFTDWVFDYGAIEDIPVPGGDLPSLXXXXXXXXSRDFTASFRADFDEQLEMPDDIK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ESGSRKRMSSSGSNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESGSRKRMSSSGSNAFGSKAHKEKMRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEK XXXXXXXXXXXXXX
Sbjct: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV 240
           XXXXXXXXXXX    L HPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV
Sbjct: 181 XXXXXXXXXXXXXXXLSHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHV 231

Query: 241 LRPPVA 247
           LRPPVA
Sbjct: 241 LRPPVA 231

[Close]

BLAST of Carg07520-RA vs. NCBI nr
Match: XP_008441610.1 (PREDICTED: transcription factor ILR3-like [Cucumis melo])

HSP 1 Score: 290.4 bits (742), Expect = 5.6e-75
Identity = 189/250 (75.60%), Postives = 195/250 (78.00%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M S E TDWVFDYG I+D PVPGGDL  XXXXXXXXX  DFTASFRADFDEPL M +D+K
Sbjct: 1   MGSPEITDWVFDYGVIEDFPVPGGDLXXXXXXXXXXXC-DFTASFRADFDEPLGMAEDVK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ESGSRKRMSS  SNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESGSRKRMSSGSSNAFESKARKEKMRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPK+DKSAILGDAVRMII LRDEAQKLKESNE+ LEKINEMKAE  XXXXXXXXXXXXXX
Sbjct: 121 PPKLDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPA----FSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXX     QPSFLPHPPA    FSSPNQ+VGGKLVPVIGYPGVSMWQFM PGAIDTS
Sbjct: 181 XXXXXXKAFNTQPSFLPHPPAIPPGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTS 234

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 234

[Close]

BLAST of Carg07520-RA vs. NCBI nr
Match: XP_004145091.1 (PREDICTED: transcription factor ILR3-like [Cucumis sativus] >KGN64576.1 hypothetical protein Csa_1G065960 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 1.3e-74
Identity = 187/250 (74.80%), Postives = 194/250 (77.60%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M S E TDWVFDYG I++IPVPGGD   XXXXXXXXX  DFTASFR DFDEPL M +D+K
Sbjct: 1   MGSPELTDWVFDYGVIENIPVPGGDXXXXXXXXXXXXXXDFTASFREDFDEPLGMEEDVK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ES SRKRMSS  SNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESRSRKRMSSGSSNAFESKARKEKIRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPKIDKSAILGDAVRMII LRDEAQKLKESNE+ LEKINEMKAEK XXXXXXXXXXXXXX
Sbjct: 121 PPKIDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPA----FSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXX     QP+FLPHPPA    FSSPNQ+VGGKLVPVIGYPGVSMWQFM PGAIDTS
Sbjct: 181 XXXXXXKGFNTQPTFLPHPPAIPAGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTS 235

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 235

[Close]

BLAST of Carg07520-RA vs. TAIR10
Match: AT5G54680.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-25
Identity = 99/193 (51.30%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 60  KESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHG 119
           KE GS+KR     S+A XX           LND+               F+EL +IL  G
Sbjct: 57  KEPGSKKRGRCESSSATXXKACREKQRRDRLNDK---------------FMELGAILEPG 116

Query: 120 RPPKIDKSAILGDAVRMIIHLRDEAQKL-KESNETFLEKINEMKAEKSXXXXXXXXXXXX 179
            PPK DK+AIL DAVRM+  LR EAQKL                    XXXXXXXXXXXX
Sbjct: 117 NPPKTDKAAILVDAVRMVTQLRGEAQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176

Query: 180 XXXXXXXXXXXXXQPSFLPHPP----AF-SSPNQVVGGKLVPVIGYPGVSMWQFMSPGAI 239
           XXXXXXXXX    QPSF P PP    AF S+  Q  G K+VP+I YPGV+MWQFM P ++
Sbjct: 177 XXXXXXXXXMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASV 234

Query: 240 DTSQDHVLRPPVA 247
           DTSQDHVLRPPVA
Sbjct: 237 DTSQDHVLRPPVA 234

[Close]

BLAST of Carg07520-RA vs. TAIR10
Match: AT4G14410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-17
Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 109 FLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXX 168
           F++L+S+L  GR PK DK AIL DA+R++  LRDEA KL+E+N+  LE+I  +KAE  XX
Sbjct: 150 FMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEXXXX 209

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXQPS-FLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQF 228
           XXXXXXXXXXXXXXXXXXXXXXX  S F+PH PA  + N++    + P  GY  + MW +
Sbjct: 210 XXXXXXXXXXXXXXXXXXXXXXXPSSGFIPHIPAAFNHNKMA---VYPSYGY--MPMWHY 269

Query: 229 MSPGAIDTSQDHVLRPPVA 247
           M     DTS+D  LRPP A
Sbjct: 270 MPQSVRDTSRDQELRPPAA 283

[Close]

BLAST of Carg07520-RA vs. TAIR10
Match: AT1G51070.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-14
Identity = 83/194 (42.78%), Postives = 92/194 (47.42%), Query Frame = 0


Query: 57  DDIKESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSIL 116
           D IKE  SRKR+ +                   LND+               F EL+S+L
Sbjct: 115 DVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDK---------------FTELSSVL 174

Query: 117 NHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXX 176
             GR PK DK AI+                                    XXXXXXXXXX
Sbjct: 175 EPGRTPKTDKVAIINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 234

Query: 177 XXXXXXXXXXXXXXXQPS----FLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGA 236
           XXXXXXXXXXXXX  QP     FLP+P   S   Q  G KLVP   YPG +MWQFM P A
Sbjct: 235 XXXXXXXXXXXXXKTQPQPQPCFLPNPQTLSQA-QAPGSKLVPFTTYPGFAMWQFMPPAA 292

Query: 237 IDTSQDHVLRPPVA 247
           +DTSQDHVLRPPVA
Sbjct: 295 VDTSQDHVLRPPVA 292

[Close]

BLAST of Carg07520-RA vs. TAIR10
Match: AT3G23210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 67/143 (46.85%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 109 FLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLE-KINEMKAEKSX 168
           F++L+S+L  GR PK DKSAIL DA+R++  LR EA +L+E+N+  LE           X
Sbjct: 182 FMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEXXXXXXXXXXXX 241

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXQPSFLP--HPPAFSSPNQVVGGKLVPVIGY--PGVS 228
           XXXXXXXXXXXXXXXXX        P F+P  HP AF S    V        GY  P + 
Sbjct: 242 XXXXXXXXXXXXXXXXXLKSMVVPSPGFMPSQHPAAFHSHKMAVAYP----YGYYPPNMP 301

Query: 229 MWQFMSPGAIDTSQDHVLRPPVA 247
           MW  + P   DTS+D    PPVA
Sbjct: 302 MWSPLPPADRDTSRDLKNLPPVA 320

[Close]

BLAST of Carg07520-RA vs. Swiss-Prot
Match: sp|Q9FH37|ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.9e-24
Identity = 99/193 (51.30%), Postives = 112/193 (58.03%), Query Frame = 0


Query: 60  KESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHG 119
           KE GS+KR     S+A XX           LND+               F+EL +IL  G
Sbjct: 57  KEPGSKKRGRCESSSATXXKACREKQRRDRLNDK---------------FMELGAILEPG 116

Query: 120 RPPKIDKSAILGDAVRMIIHLRDEAQKL-KESNETFLEKINEMKAEKSXXXXXXXXXXXX 179
            PPK DK+AIL DAVRM+  LR EAQKL                    XXXXXXXXXXXX
Sbjct: 117 NPPKTDKAAILVDAVRMVTQLRGEAQKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 176

Query: 180 XXXXXXXXXXXXXQPSFLPHPP----AF-SSPNQVVGGKLVPVIGYPGVSMWQFMSPGAI 239
           XXXXXXXXX    QPSF P PP    AF S+  Q  G K+VP+I YPGV+MWQFM P ++
Sbjct: 177 XXXXXXXXXMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASV 234

Query: 240 DTSQDHVLRPPVA 247
           DTSQDHVLRPPVA
Sbjct: 237 DTSQDHVLRPPVA 234

[Close]

BLAST of Carg07520-RA vs. Swiss-Prot
Match: sp|Q8L467|BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-16
Identity = 78/139 (56.12%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 109 FLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXX 168
           F++L+S+L  GR PK DK AIL DA+R++  LRDEA KL+E+N+  LE+I  +KAE  XX
Sbjct: 150 FMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEXXXX 209

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXQPS-FLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQF 228
           XXXXXXXXXXXXXXXXXXXXXXX  S F+PH PA  + N++    + P  GY  + MW +
Sbjct: 210 XXXXXXXXXXXXXXXXXXXXXXXPSSGFIPHIPAAFNHNKMA---VYPSYGY--MPMWHY 269

Query: 229 MSPGAIDTSQDHVLRPPVA 247
           M     DTS+D  LRPP A
Sbjct: 270 MPQSVRDTSRDQELRPPAA 283

[Close]

BLAST of Carg07520-RA vs. Swiss-Prot
Match: sp|Q9C682|BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 95/250 (38.00%), Postives = 110/250 (44.00%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M S E T+W+ DY  I+                      D +A+   + D  L   D IK
Sbjct: 1   MVSPENTNWLSDYPLIEG--------AFSDQNPTFPWQIDGSATVSVEVDGFLCDADVIK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           E  SRKR+ +                   LND+               F EL+S+L  GR
Sbjct: 61  EPSSRKRIKTESCTGSNSKACREKQRRDRLNDK---------------FTELSSVLEPGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
            PK DK AI+                                    XXXXXXXXXXXXXX
Sbjct: 121 TPKTDKVAIINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPS----FLPHPPAFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXXXXX  QP     FLP+P   S   Q  G KLVP   YPG +MWQFM P A+DTS
Sbjct: 181 XXXXXXXXXKTQPQPQPCFLPNPQTLSQA-QAPGSKLVPFTTYPGFAMWQFMPPAAVDTS 226

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 226

[Close]

BLAST of Carg07520-RA vs. Swiss-Prot
Match: sp|Q9LTC7|BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-10
Identity = 67/143 (46.85%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 109 FLELNSILNHGRPPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLE-KINEMKAEKSX 168
           F++L+S+L  GR PK DKSAIL DA+R++  LR EA +L+E+N+  LE           X
Sbjct: 182 FMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEXXXXXXXXXXXX 241

Query: 169 XXXXXXXXXXXXXXXXXXXXXXXXQPSFLP--HPPAFSSPNQVVGGKLVPVIGY--PGVS 228
           XXXXXXXXXXXXXXXXX        P F+P  HP AF S    V        GY  P + 
Sbjct: 242 XXXXXXXXXXXXXXXXXLKSMVVPSPGFMPSQHPAAFHSHKMAVAYP----YGYYPPNMP 301

Query: 229 MWQFMSPGAIDTSQDHVLRPPVA 247
           MW  + P   DTS+D    PPVA
Sbjct: 302 MWSPLPPADRDTSRDLKNLPPVA 320

[Close]

BLAST of Carg07520-RA vs. TrEMBL
Match: tr|A0A1S3B4J5|A0A1S3B4J5_CUCME (transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103485688 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 3.7e-75
Identity = 189/250 (75.60%), Postives = 195/250 (78.00%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M S E TDWVFDYG I+D PVPGGDL  XXXXXXXXX  DFTASFRADFDEPL M +D+K
Sbjct: 1   MGSPEITDWVFDYGVIEDFPVPGGDLXXXXXXXXXXXC-DFTASFRADFDEPLGMAEDVK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ESGSRKRMSS  SNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESGSRKRMSSGSSNAFESKARKEKMRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPK+DKSAILGDAVRMII LRDEAQKLKESNE+ LEKINEMKAE  XXXXXXXXXXXXXX
Sbjct: 121 PPKLDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPA----FSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXX     QPSFLPHPPA    FSSPNQ+VGGKLVPVIGYPGVSMWQFM PGAIDTS
Sbjct: 181 XXXXXXKAFNTQPSFLPHPPAIPPGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTS 234

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 234

[Close]

BLAST of Carg07520-RA vs. TrEMBL
Match: tr|A0A0A0LX71|A0A0A0LX71_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065960 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 8.3e-75
Identity = 187/250 (74.80%), Postives = 194/250 (77.60%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M S E TDWVFDYG I++IPVPGGD   XXXXXXXXX  DFTASFR DFDEPL M +D+K
Sbjct: 1   MGSPELTDWVFDYGVIENIPVPGGDXXXXXXXXXXXXXXDFTASFREDFDEPLGMEEDVK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           ES SRKRMSS  SNAF             LNDR               FLELNSILNHGR
Sbjct: 61  ESRSRKRMSSGSSNAFESKARKEKIRRDKLNDR---------------FLELNSILNHGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPKIDKSAILGDAVRMII LRDEAQKLKESNE+ LEKINEMKAEK XXXXXXXXXXXXXX
Sbjct: 121 PPKIDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPPA----FSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXX     QP+FLPHPPA    FSSPNQ+VGGKLVPVIGYPGVSMWQFM PGAIDTS
Sbjct: 181 XXXXXXKGFNTQPTFLPHPPAIPAGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTS 235

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 235

[Close]

BLAST of Carg07520-RA vs. TrEMBL
Match: tr|V4UJ84|V4UJ84_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016511mg PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.0e-45
Identity = 136/250 (54.40%), Postives = 157/250 (62.80%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M+S   ++W+FD G +D I V GGDLPS         S        A+FD+     D  K
Sbjct: 1   MSSPYNSNWIFDCGLLDGIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFDDSFGNLDAFK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           E+GSRKR+ S   +A              LNDR               F+EL SIL+ GR
Sbjct: 61  ETGSRKRVRSGSCSASGSKACREKMRRDRLNDR---------------FMELASILDPGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPK+DK+ +L DAV+M+  LRDEAQKLK SNE  L KINE      XXXXXXXXXXXXXX
Sbjct: 121 PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINEXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPP----AFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXXXXXXX    LPHPP     FS+P QVVGGKLVP++GYPGVSMWQFM P A+DTS
Sbjct: 181 XXXXXXXXXXXXXXXLPHPPPVPAPFSAPGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTS 235

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 235

[Close]

BLAST of Carg07520-RA vs. TrEMBL
Match: tr|A0A2H5N2U4|A0A2H5N2U4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010390 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.0e-45
Identity = 136/250 (54.40%), Postives = 157/250 (62.80%), Query Frame = 0


Query: 1   MASSEFTDWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFTASFRADFDEPLEMPDDIK 60
           M+S   ++W+FD G +D I V GGDLPS         S        A+FD+     D  K
Sbjct: 1   MSSPYNSNWIFDCGLLDGIGVSGGDLPSLDPPEVLWSSSTSNPPLSAEFDDSFGNLDAFK 60

Query: 61  ESGSRKRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGR 120
           E+GSRKR+ S   +A              LNDR               F+EL SIL+ GR
Sbjct: 61  ETGSRKRVRSGSCSASGSKACREKMRRDRLNDR---------------FMELASILDPGR 120

Query: 121 PPKIDKSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXX 180
           PPK+DK+ +L DAV+M+  LRDEAQKLK SNE  L KINE      XXXXXXXXXXXXXX
Sbjct: 121 PPKMDKTVLLADAVQMVTQLRDEAQKLKVSNENLLGKINEXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXQPSFLPHPP----AFSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTS 240
           XXXXXXXXXXX    LPHPP     FS+P QVVGGKLVP++GYPGVSMWQFM P A+DTS
Sbjct: 181 XXXXXXXXXXXXXXXLPHPPPVPAPFSAPGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTS 235

Query: 241 QDHVLRPPVA 247
           QDHVLRPPVA
Sbjct: 241 QDHVLRPPVA 235

[Close]

BLAST of Carg07520-RA vs. TrEMBL
Match: tr|A0A0U2I0R6|A0A0U2I0R6_9ROSA (BHLH transcription factor OS=Prunus pseudocerasus OX=151439 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 128/245 (52.24%), Postives = 142/245 (57.96%), Query Frame = 0


Query: 8   DWVFDYGAIDDIPVPGGDLPSXXXXXXXXXSRDFT--ASFRADFDEPLEMPDDIKESGSR 67
           +WVFDYG I+DIPVPGGDLP          S  F   A+   DFD+     D IKESG R
Sbjct: 9   NWVFDYGVIEDIPVPGGDLPPLDLPGFTWPSNSFVAPAAPSVDFDDSFGNSDSIKESGFR 68

Query: 68  KRMSSSGSNAFXXXXXXXXXXXXXLNDRHLNSITFIVFAILVSFLELNSILNHGRPPKID 127
           KR+ S   N               LNDR               FLEL+S+L  GRPPK D
Sbjct: 69  KRVRSGSCNVTGSKACREKMRRDRLNDR---------------FLELSSMLEPGRPPKTD 128

Query: 128 KSAILGDAVRMIIHLRDEAQKLKESNETFLEKINEMKAEKSXXXXXXXXXXXXXXXXXXX 187
           K+AILGDAVR++  LR EA                      XXXXXXXXXXXXXXXXXXX
Sbjct: 129 KAAILGDAVRVVNQLRGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 188

Query: 188 XXXXXXQPSFLPHPPA----FSSPNQVVGGKLVPVIGYPGVSMWQFMSPGAIDTSQDHVL 247
           XX    QP FLPHP A    F +P QVVGGKL+P +GYPGVSMWQFM P A+DTSQDHVL
Sbjct: 189 XXALNTQPGFLPHPAAIPGPFPAPGQVVGGKLMPFVGYPGVSMWQFMPPAAVDTSQDHVL 238

The following BLAST results are available for this feature:

BLAST of Carg07520-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519614.1	2.0e-88	86.59	transcription factor ILR3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001300.1	5.8e-88	86.18	transcription factor ILR3-like [Cucurbita maxima]	[more]
XP_022927529.1	5.4e-86	84.96	transcription factor ILR3-like [Cucurbita moschata]	[more]
XP_008441610.1	5.6e-75	75.60	PREDICTED: transcription factor ILR3-like [Cucumis melo]	[more]
XP_004145091.1	1.3e-74	74.80	PREDICTED: transcription factor ILR3-like [Cucumis sativus] >KGN64576.1 hypothet...	[more]

BLAST of Carg07520-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54680.1	3.8e-25	51.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G14410.1	2.2e-17	56.12	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G51070.2	2.3e-14	42.78	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G23210.1	1.4e-11	46.85	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg07520-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FH37\|ILR3_ARATH	6.9e-24	51.30	Transcription factor ILR3 OS=Arabidopsis thaliana OX=3702 GN=ILR3 PE=1 SV=1	[more]
sp\|Q8L467\|BH104_ARATH	4.0e-16	56.12	Transcription factor bHLH104 OS=Arabidopsis thaliana OX=3702 GN=BHLH104 PE=1 SV=...	[more]
sp\|Q9C682\|BH115_ARATH	1.7e-14	38.00	Transcription factor bHLH115 OS=Arabidopsis thaliana OX=3702 GN=BHLH115 PE=1 SV=...	[more]
sp\|Q9LTC7\|BH034_ARATH	2.5e-10	46.85	Transcription factor bHLH34 OS=Arabidopsis thaliana OX=3702 GN=BHLH34 PE=2 SV=1	[more]

BLAST of Carg07520-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4J5\|A0A1S3B4J5_CUCME	3.7e-75	75.60	transcription factor ILR3-like OS=Cucumis melo OX=3656 GN=LOC103485688 PE=4 SV=1	[more]
tr\|A0A0A0LX71\|A0A0A0LX71_CUCSA	8.3e-75	74.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G065960 PE=4 SV=1	[more]
tr\|V4UJ84\|V4UJ84_9ROSI	9.0e-45	54.40	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10016511mg PE=4 ...	[more]
tr\|A0A2H5N2U4\|A0A2H5N2U4_CITUN	9.0e-45	54.40	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_010390 PE=4 SV=1	[more]
tr\|A0A0U2I0R6\|A0A0U2I0R6_9ROSA	3.5e-41	52.24	BHLH transcription factor OS=Prunus pseudocerasus OX=151439 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom
IPR036638	HLH_DNA-bd_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg07520	Carg07520	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg07520-RA	Carg07520-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07520-RA.exon.1	Carg07520-RA.exon.1	exon
Carg07520-RA.exon.2	Carg07520-RA.exon.2	exon
Carg07520-RA.exon.3	Carg07520-RA.exon.3	exon
Carg07520-RA.exon.4	Carg07520-RA.exon.4	exon
Carg07520-RA.exon.5	Carg07520-RA.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07520-RA.CDS.1	Carg07520-RA.CDS.1	CDS
Carg07520-RA.CDS.2	Carg07520-RA.CDS.2	CDS
Carg07520-RA.CDS.3	Carg07520-RA.CDS.3	CDS
Carg07520-RA.CDS.4	Carg07520-RA.CDS.4	CDS
Carg07520-RA.CDS.5	Carg07520-RA.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07520-RA.three_prime_UTR.1	Carg07520-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..85
None	No IPR available	PANTHER	PTHR23042	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	coord: 42..246
None	No IPR available	PANTHER	PTHR23042:SF102	SUBFAMILY NOT NAMED	coord: 42..246
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 77..157 e-value: 1.0E-7 score: 33.8
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 82..168
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 78..145 e-value: 3.5889E-5 score: 39.1195