Carg06965-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTGAGACCTTCAACATTAATTGTGTGCAAAGTCGTTGATCGTTGCCTATATCTGTTTTGTATAAGCAGCGAGATGCTACTTGGTGCATGTTTAGATAACCTGGGTCAATGCTTCGTGCATCGTTCTTTTTCCTCGAGGGGAGTATTTGCTTGTGCAGGTTCTATGTGCGGGAAAGGATTTAGCAACAGAGAAGAGTGCTAGCCGAATGACTAGTTTGTTGAGACAGATGCAACAGAGTTTACCGCCTTCTACTTTAGCCTCAACATGGTCCTACTTGCAACCCCAGCACCAACTTGCTTTGCAGTCTATCCTCTCATAGTCTCTCAAAGGTGACTCTGGATCCTGCCGCTGCCCCAGGACGGCACACTTTTCTGTTCTTGTTTATGTTCGAATTATATTCGTCCCCATTCTTTGCCAAAAAATGCTCTCAAGCATGAGTTTTGTTTGGTCCCTTGGAGAGAGATGCTGTCATTTGATGATAGTGAAAATCATCGTTGCTTCGTGTTAAATAAAATGTGTATATTTCATTGTTTAATTCTAAGTACGTGGGTTTGTTACGATTTCTTTCTAGTTTCGGGTAGATAGGTCGCCTCGGAGGCAATCTTTTACAGTTCTGTTTTGGTCCAATTAACTAGTATCATTGTCGTTATAAATTTTCAATGCAGTTTCAGAATATATCAAATGAATTTTGTGATTGTGTTTCCTTGATTTGTTTTGAATTCTATTTCCAATTAGCAAAGAAACTTGACGTCTTTTACCTGGTCTCCCTCTTCTCTGTCTGTATTACAGAATTTTCTAAGCCAAAAAAAAAAAAAAGAAAAAAAAAAAGAACATTTCACTCAAATTTATTTAAGGCTTGCTTAGAGAGTGGAAAAAAAGTAACACAGGGATGCCTGGACTTGTCGTAGTCTTAGTAGATATTGCTTTGGGGCAAATAAAACAAGTGGACTCAAGGTCAGACAATGCACGTTCAGACAACTTTGCAATTAAACTTTCATTCTTAACGTCGTGCTTCCACGAGTTTGTTGTGTTTGTTTGTTTGATTTTTCCAGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCGGTAACTCCTTCCATTAGCTGTTAATCATCCCATCAAATTCCTCCCTTTACTGCCATCGTGACTCATTATTCTCCATTTGGGTTTCCATTATACAGACGAAAAGGGCACTACATTTATAAGCCCAATAATTAAATAAAATCAACAGACATGCTGACAAGAAGACAAAGACGAGGACACCACTAACAGCTAACAGCCTAAAGCCCTCATGCCTCATGCCGCCATTATAAAACCAATGCCCATCACTTCTTCCTTCAATCTCAATTCCATTCGTAAACTTTGCAATGCAGATGGAGGGTTCAGTTGAGAAACAACAGCATAAAGAGGTTTCAGTTTCAGGCAGCAAAGTTGGGAAATGCAAGGACAGATCTCGTAGACGCAGCTTCGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGATCAAAGACACAACCCATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCACAGCATACGATGAAGCCGCCCGCCTCCTCCGTGGTGCCAATACTCGTACCAACTTCGCAACCCATCTCAAATCCACCTCCGCCCTCTCTTTCAAAATTAGAAATCTCCTCAACCAAAAGGTCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCAGTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTTCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCCCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGAGGGTCAGATATTCTGCCCAAGTTGA ATGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCGATGGAGGGTTCAGTTGAGAAACAACAGCATAAAGAGGTTTCAGTTTCAGGCAGCAAAGTTGGGAAATGCAAGGACAGATCTCGTAGACGCAGCTTCGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGATCAAAGACACAACCCATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCACAGCATACGATGAAGCCGCCCGCCTCCTCCGTGGTGCCAATACTCGTACCAACTTCGCAACCCATCTCAAATCCACCTCCGCCCTCTCTTTCAAAATTAGAAATCTCCTCAACCAAAAGGTCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCAGTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTTCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCCCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGAGGGTCAGATATTCTGCCCAAGTTGA ATGGGAAGAAGAGTGGACTCCAAACTGAAGTTGCAGACCACTCATGGTATGGCGTGCGGCTGCGTAGGCGCAGGCTCCTCAAATTCAACGTCGATGGAGGGTTCAGTTGAGAAACAACAGCATAAAGAGGTTTCAGTTTCAGGCAGCAAAGTTGGGAAATGCAAGGACAGATCTCGTAGACGCAGCTTCGTTGGTGTCAGACAAAGGCCCTCTGGGAAATGGGTGGCAGAGATCAAAGACACAACCCATGATATCAGAATGTGGTTGGGAACCTTCAAGACAGCGGAAGAGGCTGCCACAGCATACGATGAAGCCGCCCGCCTCCTCCGTGGTGCCAATACTCGTACCAACTTCGCAACCCATCTCAAATCCACCTCCGCCCTCTCTTTCAAAATTAGAAATCTCCTCAACCAAAAGGTCAGTTTGAAACGAAGCTCCTCCAAAACCAGCCCCACCAAACTCGGTCCAATCAGTGAAATTGAGGGTGCTCATTCTGGGCTCTCCTTCTCCACTGCCACAAACCAAGAGATACATAAGACGTTTGATAATGCAGACTGGAGCAGCGCCTGCAGTGGAGAAGTTGAGGTGCTGGGTCTTCGTCAGTTCAGCCATTCGTGGTGGCATCTTCCCCTTGGGTTGAACTTGGAAATGGATGAGCCTCCTGATCCATTACTGACCCACCAAGATAGACAAGTGGCAGAGATGTCATGTGATTCAGAGCAATTAGATCTAACATCCATACCTATGTGTGCAGTGAATGGAATGAGTGAATATTTAGGAACTACATATGATGCCTTTGATTCTGAGGGTCAGATATTCTGCCCAAGTTGA MGRRVDSKLKLQTTHGMACGCVGAGSSNSTSMEGSVEKQQHKEVSVSGSKVGKCKDRSRRRSFVGVRQRPSGKWVAEIKDTTHDIRMWLGTFKTAEEAATAYDEAARLLRGANTRTNFATHLKSTSALSFKIRNLLNQKVSLKRSSSKTSPTKLGPISEIEGAHSGLSFSTATNQEIHKTFDNADWSSACSGEVEVLGLRQFSHSWWHLPLGLNLEMDEPPDPLLTHQDRQVAEMSCDSEQLDLTSIPMCAVNGMSEYLGTTYDAFDSEGQIFCPS
BLAST of Carg06965-RA vs. NCBI nr
Match: XP_022985763.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima] >XP_022985764.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima] >XP_022985765.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima] >XP_022985767.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita maxima]) HSP 1 Score: 483.4 bits (1243), Expect = 5.1e-133 Identity = 239/245 (97.55%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Carg06965-RA vs. NCBI nr
Match: XP_023512705.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo] >XP_023512706.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 482.3 bits (1240), Expect = 1.1e-132 Identity = 240/245 (97.96%), Postives = 243/245 (99.18%), Query Frame = 0
BLAST of Carg06965-RA vs. NCBI nr
Match: XP_022944296.1 (ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >XP_022944297.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata] >XP_022944298.1 ethylene-responsive transcription factor RAP2-11-like [Cucurbita moschata]) HSP 1 Score: 481.9 bits (1239), Expect = 1.5e-132 Identity = 240/245 (97.96%), Postives = 242/245 (98.78%), Query Frame = 0
BLAST of Carg06965-RA vs. NCBI nr
Match: XP_022153759.1 (ethylene-responsive transcription factor RAP2-11 [Momordica charantia]) HSP 1 Score: 293.1 bits (749), Expect = 9.8e-76 Identity = 173/267 (64.79%), Postives = 199/267 (74.53%), Query Frame = 0
BLAST of Carg06965-RA vs. NCBI nr
Match: XP_004149659.1 (PREDICTED: ethylene-responsive transcription factor ERF087 [Cucumis sativus] >KGN54026.1 hypothetical protein Csa_4G268100 [Cucumis sativus]) HSP 1 Score: 197.2 bits (500), Expect = 7.3e-47 Identity = 125/239 (52.30%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of Carg06965-RA vs. TAIR10
Match: AT5G19790.1 (related to AP2 11) HSP 1 Score: 127.1 bits (318), Expect = 1.7e-29 Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0
BLAST of Carg06965-RA vs. TAIR10
Match: AT2G47520.1 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 82.4 bits (202), Expect = 4.7e-16 Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 0
BLAST of Carg06965-RA vs. TAIR10
Match: AT1G53910.1 (related to AP2 12) HSP 1 Score: 82.0 bits (201), Expect = 6.2e-16 Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 0
BLAST of Carg06965-RA vs. TAIR10
Match: AT2G33710.2 (Integrase-type DNA-binding superfamily protein) HSP 1 Score: 80.1 bits (196), Expect = 2.4e-15 Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = 0
BLAST of Carg06965-RA vs. TAIR10
Match: AT4G11140.1 (cytokinin response factor 1) HSP 1 Score: 77.0 bits (188), Expect = 2.0e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of Carg06965-RA vs. Swiss-Prot
Match: sp|A0A1X9PY88|ERN1_LOTJA (Ethylene-responsive transcription factor ERN1 OS=Lotus japonicus OX=34305 GN=ERN1 PE=2 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28 Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 0
BLAST of Carg06965-RA vs. Swiss-Prot
Match: sp|Q6J9S1|RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana OX=3702 GN=RAP2-11 PE=2 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 3.0e-28 Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0
BLAST of Carg06965-RA vs. Swiss-Prot
Match: sp|A2Q5W1|ERN1_MEDTR (Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27 Identity = 101/251 (40.24%), Postives = 136/251 (54.18%), Query Frame = 0
BLAST of Carg06965-RA vs. Swiss-Prot
Match: sp|A9Y0K8|ERN2_MEDTR (Ethylene-responsive transcription factor ERN2 OS=Medicago truncatula OX=3880 GN=ERN2 PE=1 SV=2) HSP 1 Score: 116.3 bits (290), Expect = 5.3e-25 Identity = 63/99 (63.64%), Postives = 76/99 (76.77%), Query Frame = 0
BLAST of Carg06965-RA vs. Swiss-Prot
Match: sp|A9Y0K9|ERN3_MEDTR (Ethylene-responsive transcription factor ERN3 OS=Medicago truncatula OX=3880 GN=ERN3 PE=2 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 2.2e-23 Identity = 71/147 (48.30%), Postives = 89/147 (60.54%), Query Frame = 0
BLAST of Carg06965-RA vs. TrEMBL
Match: tr|A0A1S3BN65|A0A1S3BN65_CUCME (ethylene-responsive transcription factor RAP2-11 OS=Cucumis melo OX=3656 GN=LOC103491681 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 4.8e-47 Identity = 126/239 (52.72%), Postives = 149/239 (62.34%), Query Frame = 0
BLAST of Carg06965-RA vs. TrEMBL
Match: tr|A0A0A0L1N6|A0A0A0L1N6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G268100 PE=4 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 4.8e-47 Identity = 125/239 (52.30%), Postives = 150/239 (62.76%), Query Frame = 0
BLAST of Carg06965-RA vs. TrEMBL
Match: tr|A0A2P5FJX0|A0A2P5FJX0_9ROSA (AP2/ERF transcription factor OS=Trema orientalis OX=63057 GN=TorERN2 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 5.2e-33 Identity = 113/289 (39.10%), Postives = 146/289 (50.52%), Query Frame = 0
BLAST of Carg06965-RA vs. TrEMBL
Match: tr|A0A2I4FS94|A0A2I4FS94_9ROSI (ethylene-responsive transcription factor RAP2-11 OS=Juglans regia OX=51240 GN=LOC109001630 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 5.2e-33 Identity = 114/274 (41.61%), Postives = 145/274 (52.92%), Query Frame = 0
BLAST of Carg06965-RA vs. TrEMBL
Match: tr|A0A1R3IET6|A0A1R3IET6_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12634 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32 Identity = 120/306 (39.22%), Postives = 157/306 (51.31%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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