Carg06946-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTATTTGACATCAGGATAGGTAAAACATATTTTTTTATGGCACATATTAACACTTCATAGATCATATTTTTCCTTTCAAGGATCTCAATTTATGGAGTGTCTATCATCGCTACTGCAGGTAAGAGTATTGTGTGAAAAAGCTAAGGAGATACTAATGGACGAGAGCAACGTCCAGGTGTGCTTTATTTGGTGCCTTGTTATTGTTCTGTTATCTGGATTTATTGATGTTGCTTAATTTTTATGTTAATACCTTGGGGGTTTATGCTCTGCAGCCTGTTAAAAGTCCGGTAACAATATGTGGTGATATTCATGGGCAATTTCATGATCTTGCAGAACTCTTTCGCATTGGAGGGAAGGTATTAATTTGACCATTGGCAGGATTTTCGTGATTATTATTGCTGAATGAGTAGTGATTAAAGCTTTGAACGGAAAATAAATGCTCAAGTGTGACAGAAAAGCTCTTGATATGTAGATTCTTGTTAATGTCGAATCATTGTGCTTCTCCAACTTCAAGCATTATTACCGAGTTCATAATGAAGTATATTAGGTGATGGATATATATTGAAGCAAAAAAAAAAAAAAAAAAAGGCAAATATTTTAATGCACTTCTGTAATGCTAGATATATGTCCTGTATCCTTGATATACACACAATAACATACGTTTATTAAATCAAGGTCATGATCGATAGCTAACATATAAATGTAGTCAAATTTTCTATGCTCATCACATGCTTATATTTAATTTCGAGGTCCTTCCTGAAGTTTTATACTATAGTTGGGCTTCAGTAGTTTAGAGTAGTCTCTTCTTTCTTTTTTACATTATACCAATATCATACAGCTCTTTATTCCTTCAAAATATCTCTGTTGGGGCAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTACTACTCAGTTGAAACTGTTACGGTATGTTTTTGTTTTATGTAAATGTACTAGAGCATTCACTTCGTATATTATGTGGCACTAGCAGAAATTGTTTGGCTTGAAAATCTAGAGACATTGCAAAAACTGAACTATTATTGTAGGCCCTGAGAATTTGTTTTTATGTGCAGTATTTATGATTTAGAAGATCATAACACACCCTCTGATAACCAATTTTTTGGAAATTCTTTTTCTGATAATTGAACACCACTATAGGTGCATTTTATATGCATTTCTTTGTTCAAAATTTTCAAATCGTAGGAACATTCAGCACCTTCAACTAATAGTATAAGGATTAGAGTTTTAGCTATTATCAATGAGGGTATAACAATCTATTTTCTAATCAATAAGTGAGTTACTAACAAACAACCTCTTGTTGCTTGACCAAGTAGTACGTTATCCTAGGCTTCTACAAAGACACGCTTGTTCCTCTTCCTCGTCTCTTCTTATAATCACCTCTTTTTCTTTTCTTTTTTTCATTTTCCCTTGTCTTTTCCTGTGTATTATGCAAAATAGTCAATTCTTTGTTTTTCCATATTCAAGGTCTAAAAAGCATTTTCATTATTTCGGGAATATCAAAAGAAAAAAAAAACATATTTTTCTTGTTTGTAAAAAAAAAAAAAAAAAAAAGAATGAGATGAGGACATGCATTTGCTTCCAGCATTTTGCAAATAACTGTTTTATGTCTTTGAGCATGCATAGAGCCTTTGATTATGTCTTGACAAAAATCTAATAGATGGGAATACCATATCAAAGCAACTTCCGCTGATTGATCAGAATCATCAGTATTTGTGATACAAGTATCTTCAGATTCTCGATTATCATTAAAAATAATGACACGTTTGGCTTTTCTCATGTTGAAAGCCTCTTTCTATAGCATTCTTACTTCTTTATCTCTTCTGTCTACTACTACTCTGGGACTATAGACTTGCGGAACCATTTGAAAGTTGTGGTCTTTATTTATAAGGTTCATGAGCTGAATATAGTTACTCATCCATGAGCATTAGAGATTAAAATTTTACTTGATCCACAAACGTTATACTTTATTTAACAAAGTAATTAAAAGACCACTATCCTGGAATGCGAATGTGAGCTTGACCAATAATTTATGCTGCATGACTCCTTCCACCATATTCTGTTAGCATTAATTAGCCATTCTATGATAATATTTTCGTAGTAGGAACTCAACTCATGTCCTAATATGAGTCATTTTGCAGCTTTTAGTGGCCCTTAAAGTGCGATATCCTCAACGCATTACAATTCTTAGAGGAAATCATGAAAGTCGTCAGGTAAATGTTTATCATTGTCGTTTCTGCTGTTAATGTCTACCTGGATATTAACTGGGTACCATGGCCCCAAATTTTATTCCTTTTGACAGATGACATCTCTAATTGTGGTTTATGTTCTCTTTTTGCAGATAACACAAGTGTATGGGTTCTATGATGAATGTTTAAGAAAGTATGTCTTTTCTGGCTTATCCTCAGTAGGAATTTTATTTTTCAACATCCTTCTATGGCTCGACTCCATCTTTCTTGTCATATCAGATCCTTTTTTTTGTATCTGCGTTCCTTGTATTTAGTACTACTTTGTGATGCGCTTTTTGGGATGCTTATTCAGCTTCAATAAAAGGGTTGCTTTGATACATTTTGACATGTTTCTTGAAATATCTCATCTTGAAAAGATTATTTACTATGTGTTGCTCATATTTGAAGTTGAGTTATTTGTCGGAAGATGGAAGTTGTGTATGTAATCCACAAGGTAGAGAACATTTTTTGTGAACCGAGACTATCACATCAACATGAAGTATGAAGTATGAAGTATGAAGTATAATTTGAAAATGCAACCCAAGCCTGATCTGAAAGTTTTAATATGTTATCTCATTTGCAGGTACGGCAATGCTAATGTTTGGAAGATTTTTACTGACCTGTTTGACTATTTTCCGCTGACAGCCCTGGTCAGTATAACTTAAGCACCATTATGTGTACTCACATTGTGGGGTTCTATTCCTCCTTTTTCCATTATGATTGTTAATTTTTGTTTCTTAAACTGCTTTTGATGCTTATTTGTCTGGCCTTTATAGGTCGAATCAGAAATATTCTGTCTGCATGGTGGTTTGTCTCCATCCATTGAAACTCTTGACAACATACGGAATTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGTCCCATGTGTGATCTCTTATGGTCGGACCCAGATGATCGATGTGGTTGGGGAATTTCTCCCAGAGGCGCAGGATATACCTTTGGTCAGGTAATTTTCCTAGGCAACCCCCCACCATTTAACATCTAACCCTTCATATTTTCACCATGGAGTTTTATAAGCTCTTTTTGTTGTTTCTTCAGGACATATCTGAGCAGTTTAACCATAGTAACAATTTAAAGTTGATTGCGAGAGCTCATCAGCTAGTGATGGAAGGATATAACTGGAGTCATGTAAGAAGCTTTTTCCCTTTGATGCCTGCATTGATCTTTTGTTTTGGTGGTGTGAGCAATTTAAAAATTGTAGATTGCTTATCACAGGAACAAAAAGTTGTGACTATATTTAGTGCACCTAATTATTGTTATCGCTGTGGAAATATGGCATCAATTCTGGAAGTTGATGACTGCAAGGCGCACACTTTCATTCAGGTCACCTCAACTCCACACACCACACACCCCCCACCGTCAACCCCCCCCTCCACCTCCCTCCCTCCCGAAAGGGAGAAAAGGCTCTCTAATATCACAGCCAGTCATTACTTTATTCATATCTGACCTTTCTGTTTTCTGTATGTGTCAAAAGTTGTGAAATTCTTTGCTTCTGCAGTTCGAACCAGCTCCAAGGAGGGGTGAGCCAGATGTTACTCGAAGAACTCCCGATTACTTCTTGTGATGCGGCTATTGTCAGATGAAAATTTCTAGCAGCAGCTGTTTCCAAATGTATGTTTTGCCTGTTGTTACGTTGGAGAATTTCAGTTTGGGGGGGGGGGGGGGAGTGAAGCATGTAAATTTCGGCTGGTTGCTTCAGGCGGGAGGAGTGCATCCTTGAAAATCTCAAGGTTTTTGCTGATGGAGGCTATAGGGCTAGCGGCTCATTAACTGCATATGTAACATCTCCACAGAACAATGTTGTGTTGCATCTGTTTCTTTCTTTAGTAATGTGTTTCATGTAATTTTCTTTTCCTCTGCTTTTCTGTTAACTATTTTGTAGGATGCTTGTTCTAGTTTTCTTTTTGGGGGTTTACAGATGGACCATCTGTTTAATTTCCTTCAATGAGTGCCTTCATTATTCTTTCCCA TTTTATTTGACATCAGGATAGGTAAAACATATTTTTTTATGGCACATATTAACACTTCATAGATCATATTTTTCCTTTCAAGGATCTCAATTTATGGAGTGTCTATCATCGCTACTGCAGGTAAGAGTATTGTGTGAAAAAGCTAAGGAGATACTAATGGACGAGAGCAACGTCCAGCCTGTTAAAAGTCCGGTAACAATATGTGGTGATATTCATGGGCAATTTCATGATCTTGCAGAACTCTTTCGCATTGGAGGGAAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTACTACTCAGTTGAAACTGTTACGCTTTTAGTGGCCCTTAAAGTGCGATATCCTCAACGCATTACAATTCTTAGAGGAAATCATGAAAGTCGTCAGATAACACAAGTGTATGGGTTCTATGATGAATGTTTAAGAAAGTACGGCAATGCTAATGTTTGGAAGATTTTTACTGACCTGTTTGACTATTTTCCGCTGACAGCCCTGGTCGAATCAGAAATATTCTGTCTGCATGGTGGTTTGTCTCCATCCATTGAAACTCTTGACAACATACGGAATTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGTCCCATGTGTGATCTCTTATGGTCGGACCCAGATGATCGATGTGGTTGGGGAATTTCTCCCAGAGGCGCAGGATATACCTTTGGTCAGGACATATCTGAGCAGTTTAACCATAGTAACAATTTAAAGTTGATTGCGAGAGCTCATCAGCTAGTGATGGAAGGATATAACTGGAGTCATGAACAAAAAGTTGTGACTATATTTAGTGCACCTAATTATTGTTATCGCTGTGGAAATATGGCATCAATTCTGGAAGTTGATGACTGCAAGGCGCACACTTTCATTCAGTTCGAACCAGCTCCAAGGAGGGGTGAGCCAGATGTTACTCGAAGAACTCCCGATTACTTCTTGTGATGCGGCTATTGTCAGATGAAAATTTCTAGCAGCAGCTGTTTCCAAATGTATGTTTTGCCTGTTGTTACGTTGGAGAATTTCAGTTTGGGGGGGGGGGGGGGAGTGAAGCATGTAAATTTCGGCTGGTTGCTTCAGGCGGGAGGAGTGCATCCTTGAAAATCTCAAGGTTTTTGCTGATGGAGGCTATAGGGCTAGCGGCTCATTAACTGCATATGTAACATCTCCACAGAACAATGTTGTGTTGCATCTGTTTCTTTCTTTAGTAATGTGTTTCATGTAATTTTCTTTTCCTCTGCTTTTCTGTTAACTATTTTGTAGGATGCTTGTTCTAGTTTTCTTTTTGGGGGTTTACAGATGGACCATCTGTTTAATTTCCTTCAATGAGTGCCTTCATTATTCTTTCCCA ATGGAGTGTCTATCATCGCTACTGCAGGTAAGAGTATTGTGTGAAAAAGCTAAGGAGATACTAATGGACGAGAGCAACGTCCAGCCTGTTAAAAGTCCGGTAACAATATGTGGTGATATTCATGGGCAATTTCATGATCTTGCAGAACTCTTTCGCATTGGAGGGAAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGATCGTGGCTACTACTCAGTTGAAACTGTTACGCTTTTAGTGGCCCTTAAAGTGCGATATCCTCAACGCATTACAATTCTTAGAGGAAATCATGAAAGTCGTCAGATAACACAAGTGTATGGGTTCTATGATGAATGTTTAAGAAAGTACGGCAATGCTAATGTTTGGAAGATTTTTACTGACCTGTTTGACTATTTTCCGCTGACAGCCCTGGTCGAATCAGAAATATTCTGTCTGCATGGTGGTTTGTCTCCATCCATTGAAACTCTTGACAACATACGGAATTTTGATCGTGTTCAAGAAGTTCCTCATGAAGGTCCCATGTGTGATCTCTTATGGTCGGACCCAGATGATCGATGTGGTTGGGGAATTTCTCCCAGAGGCGCAGGATATACCTTTGGTCAGGACATATCTGAGCAGTTTAACCATAGTAACAATTTAAAGTTGATTGCGAGAGCTCATCAGCTAGTGATGGAAGGATATAACTGGAGTCATGAACAAAAAGTTGTGACTATATTTAGTGCACCTAATTATTGTTATCGCTGTGGAAATATGGCATCAATTCTGGAAGTTGATGACTGCAAGGCGCACACTTTCATTCAGTTCGAACCAGCTCCAAGGAGGGGTGAGCCAGATGTTACTCGAAGAACTCCCGATTACTTCTTGTGA MECLSSLLQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHSNNLKLIARAHQLVMEGYNWSHEQKVVTIFSAPNYCYRCGNMASILEVDDCKAHTFIQFEPAPRRGEPDVTRRTPDYFL
BLAST of Carg06946-RA vs. NCBI nr
Match: XP_008449804.1 (PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucumis melo] >XP_008449806.1 PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucumis melo] >XP_008449807.1 PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucumis melo] >XP_022943566.1 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [Cucurbita moschata] >XP_023512721.1 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 609.0 bits (1569), Expect = 8.5e-171 Identity = 282/283 (99.65%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. NCBI nr
Match: XP_004142163.1 (PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucumis sativus] >XP_011653556.1 PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucumis sativus] >KGN54075.1 hypothetical protein Csa_4G280520 [Cucumis sativus]) HSP 1 Score: 607.8 bits (1566), Expect = 1.9e-170 Identity = 281/283 (99.29%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. NCBI nr
Match: XP_022986178.1 (serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [Cucurbita maxima]) HSP 1 Score: 607.8 bits (1566), Expect = 1.9e-170 Identity = 281/283 (99.29%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. NCBI nr
Match: XP_022958620.1 (serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [Cucurbita moschata] >XP_022995789.1 serine/threonine-protein phosphatase PP2A-2 catalytic subunit [Cucurbita maxima] >XP_023533698.1 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 607.1 bits (1564), Expect = 3.2e-170 Identity = 281/283 (99.29%), Postives = 282/283 (99.65%), Query Frame = 0
BLAST of Carg06946-RA vs. NCBI nr
Match: XP_018724720.1 (PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit isoform X2 [Eucalyptus grandis] >XP_018724721.1 PREDICTED: serine/threonine-protein phosphatase PP2A-2 catalytic subunit isoform X2 [Eucalyptus grandis] >KCW87086.1 hypothetical protein EUGRSUZ_B03620 [Eucalyptus grandis]) HSP 1 Score: 606.3 bits (1562), Expect = 5.5e-170 Identity = 280/283 (98.94%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. TAIR10
Match: AT3G58500.1 (protein phosphatase 2A-4) HSP 1 Score: 598.6 bits (1542), Expect = 2.1e-171 Identity = 275/283 (97.17%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. TAIR10
Match: AT2G42500.1 (protein phosphatase 2A-3) HSP 1 Score: 598.2 bits (1541), Expect = 2.7e-171 Identity = 275/283 (97.17%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. TAIR10
Match: AT1G59830.1 (protein phosphatase 2A-2) HSP 1 Score: 515.8 bits (1327), Expect = 1.8e-146 Identity = 228/282 (80.85%), Postives = 257/282 (91.13%), Query Frame = 0
BLAST of Carg06946-RA vs. TAIR10
Match: AT1G69960.1 (serine/threonine protein phosphatase 2A) HSP 1 Score: 513.1 bits (1320), Expect = 1.1e-145 Identity = 231/292 (79.11%), Postives = 262/292 (89.73%), Query Frame = 0
BLAST of Carg06946-RA vs. TAIR10
Match: AT1G10430.1 (protein phosphatase 2A-2) HSP 1 Score: 512.7 bits (1319), Expect = 1.5e-145 Identity = 230/292 (78.77%), Postives = 260/292 (89.04%), Query Frame = 0
BLAST of Carg06946-RA vs. Swiss-Prot
Match: sp|P48578|PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=PP2A4 PE=1 SV=1) HSP 1 Score: 598.6 bits (1542), Expect = 3.7e-170 Identity = 275/283 (97.17%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. Swiss-Prot
Match: sp|Q07100|PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana OX=3702 GN=PP2A3 PE=1 SV=2) HSP 1 Score: 598.2 bits (1541), Expect = 4.9e-170 Identity = 275/283 (97.17%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. Swiss-Prot
Match: sp|A2XN40|PP2A2_ORYSI (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. indica OX=39946 GN=PP2A2 PE=2 SV=2) HSP 1 Score: 595.9 bits (1535), Expect = 2.4e-169 Identity = 273/283 (96.47%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. Swiss-Prot
Match: sp|Q10BT5|PP2A2_ORYSJ (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica OX=39947 GN=PP2A2 PE=2 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 2.4e-169 Identity = 273/283 (96.47%), Postives = 280/283 (98.94%), Query Frame = 0
BLAST of Carg06946-RA vs. Swiss-Prot
Match: sp|Q06009|PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa OX=3879 GN=PP2A PE=2 SV=1) HSP 1 Score: 594.7 bits (1532), Expect = 5.4e-169 Identity = 273/283 (96.47%), Postives = 281/283 (99.29%), Query Frame = 0
BLAST of Carg06946-RA vs. TrEMBL
Match: tr|A0A1S3BMA2|A0A1S3BMA2_CUCME (Serine/threonine-protein phosphatase OS=Cucumis melo OX=3656 GN=LOC103491583 PE=3 SV=1) HSP 1 Score: 609.0 bits (1569), Expect = 5.6e-171 Identity = 282/283 (99.65%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. TrEMBL
Match: tr|A0A0A0KWV0|A0A0A0KWV0_CUCSA (Serine/threonine-protein phosphatase OS=Cucumis sativus OX=3659 GN=Csa_4G280520 PE=3 SV=1) HSP 1 Score: 607.8 bits (1566), Expect = 1.2e-170 Identity = 281/283 (99.29%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. TrEMBL
Match: tr|A0A059D9K2|A0A059D9K2_EUCGR (Serine/threonine-protein phosphatase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03620 PE=3 SV=1) HSP 1 Score: 606.3 bits (1562), Expect = 3.6e-170 Identity = 280/283 (98.94%), Postives = 283/283 (100.00%), Query Frame = 0
BLAST of Carg06946-RA vs. TrEMBL
Match: tr|A0A067F6P2|A0A067F6P2_CITSI (Serine/threonine-protein phosphatase OS=Citrus sinensis OX=2711 GN=CISIN_1g016098mg PE=3 SV=1) HSP 1 Score: 605.1 bits (1559), Expect = 8.1e-170 Identity = 279/285 (97.89%), Postives = 282/285 (98.95%), Query Frame = 0
BLAST of Carg06946-RA vs. TrEMBL
Match: tr|V4TZM1|V4TZM1_9ROSI (Serine/threonine-protein phosphatase OS=Citrus clementina OX=85681 GN=CICLE_v10015516mg PE=3 SV=1) HSP 1 Score: 603.6 bits (1555), Expect = 2.4e-169 Identity = 278/283 (98.23%), Postives = 281/283 (99.29%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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