Carg06936-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTCGCTATTTTGTTTCCACGTCATCTTACAGTTGAGACGACGAAGAGTCCTTTTTCCTTGCATTTCTGTCAAACCCTAACCCCAATTTCAAGCCCCCTCAACCTCAAGATCCATTTTCCTTATCAGAAATCAGTCTCACGCACTCACTCATCGTTGTTCCGATTGTCGATTGGAATCCCTGTTTAGTTTCCTGCGACTTTCCTCTGTTTCTCCTCCCCCGCAAAATTCGGCCATGTCTACGCTACCGGAGTTTAGTTGAATCGAAGATAATGATCATATTTTTGGCGTTGTTTCGCACCTACTTTTTTATGGGTTTGAACAATGCCGGTGCTTCGCAGAGGTGTGCGCAGAGGCCGCGGTAGGATCGTTCAGAAGCACTTCGAAGAGCCTCCGCCGGCTGGAGCTTACGTAAAAACTCGAGCTGCGGTCGCCAGAGAAGCTGCGGAGGCGAGACCGAGGCCAAGAACGAGGTTGGCAATCAAAGAATTAAACAAGAATCAGGAGGAAGAGGTGATTGTTATATCTGAGAGGGATACTGATTTGGAGGACAAAAAAGTGCAAGGGCTCGAGGTAGAAGAAGACAGGGGCGCTATGGGTGATGAAAGTGGCGGCTTGAGTGCTAATAAGGCTGCTGGCATAGAGGAAGAGGGTAGCTCAGCGCCTTTTCCGGAAAAGGTACATTTCATTTTGAAATACGCTCTACATTAGTTTGGTTGTTCTCATTGTTTCCTCTTTTTAATTTGCGATTTTTTGGTTTGGGCTAACGGCTTTTAGGTTGATTAGGTTGTGTAACCTTCTAATTTCAAGAAATGAGCGTCTAACTTGCATTTAATTTCGGGCGACGGTGTTTTTTGTAACTTTTCTTTCAGCAATCGTAGCAGTGTAGCCAGCTCACTTGTGTTATTATGGGACAATCATTTGCCGAACAACATTTAATATTGAATGTTCAAATTTAACAGTTCAGTTGACTGTCAAAGTTTAACTTCCGAGTCATCTGCATTCACTTCTTCACTCTCTGAGCTAACATATCATGGTTTACTCTAGAAGGATCTTTCCACAGTAATTTTAAGCTCTTATTGATCTCTAGTTGAATAGTTGCATGATGTATATTGAGCTTACTCGTAAACGTTTACTGAATTTTTTCTTGTATAGAATTAAAATAAGAAAGATGCCTATTTTCGGCTTATCTACTTTTCTGAACTTCTAAAATCTTGTGTTATTGGGCTTGGCATGTCTGGGAAGTACTTTGAGTGAATTACCGTCTTCAGAATTGCTGTTTCACTGTAAGTTTATTTATGTTTTGTGGCCTGATTCAAGGTCCAAGTAGGAGGGTCTCCAGTGTATAAAATAGAGAGAAAACTGGGCAAAGGTGGATTTGGGCAAGTATTTGTTGGTCGTCGGCTTACAGGTGGAAATGATCGTGCAACAGGGGCTGCAGCTACCGAGGTAAACATCTTGGCAGTAGTTTTTATTAATATATGCAAATGAAATAAATTTTAATTTGTCAGTATCCATGTATCATCATATTCTTACCTTATATTGATTTATTTTATTTTCAGGTTGCTCTTAAATTTGAACACAGAAATAGCAAAGGTTGTAATTATGGTCCTCCATATGAATGGCAAGTTTACAAGTGAGTAACTTTCTGGGTTATGTGGATGTTATTTTTATTGATAAAAATTGTATTTGTTTTACTCACCTCTGATACTTTGTTGAGTAGTGCACTTGGTGGCAGTCATGGAGTGCCAAAAGTACACTATAAGGGTCGACAAGGAGACTATTACGTCATGGTGTGTCAAGAACTTTATATGGTTTTCATTTTTCTAATTTATTTCCTTCAAGTTTGAATGTTAAGCTTTCTTGTTTAGGTCATGGACATGTTAGGGCCGAGCTTGTGGGATGTATGGAATTCTTCAGGGCAGGCGTGA ATTCGCTATTTTGTTTCCACGTCATCTTACAGTTGAGACGACGAAGAGTCCTTTTTCCTTGCATTTCTGTCAAACCCTAACCCCAATTTCAAGCCCCCTCAACCTCAAGATCCATTTTCCTTATCAGAAATCAGTCTCACGCACTCACTCATCGTTGTTCCGATTGTCGATTGGAATCCCTGTTTAGTTTCCTGCGACTTTCCTCTGTTTCTCCTCCCCCGCAAAATTCGGCCATGTCTACGCTACCGGAGTTTAGTTGAATCGAAGATAATGATCATATTTTTGGCGTTGTTTCGCACCTACTTTTTTATGGGTTTGAACAATGCCGGTGCTTCGCAGAGGTGTGCGCAGAGGCCGCGGTAGGATCGTTCAGAAGCACTTCGAAGAGCCTCCGCCGGCTGGAGCTTACGTAAAAACTCGAGCTGCGGTCGCCAGAGAAGCTGCGGAGGCGAGACCGAGGCCAAGAACGAGGTTGGCAATCAAAGAATTAAACAAGAATCAGGAGGAAGAGGTGATTGTTATATCTGAGAGGGATACTGATTTGGAGGACAAAAAAGTGCAAGGGCTCGAGGTAGAAGAAGACAGGGGCGCTATGGGTGATGAAAGTGGCGGCTTGAGTGCTAATAAGGCTGCTGGCATAGAGGAAGAGGGTAGCTCAGCGCCTTTTCCGGAAAAGGTCCAAGTAGGAGGGTCTCCAGTGTATAAAATAGAGAGAAAACTGGGCAAAGGTGGATTTGGGCAAGTATTTGTTGGTCGTCGGCTTACAGGTGGAAATGATCGTGCAACAGGGGCTGCAGCTACCGAGGTTGCTCTTAAATTTGAACACAGAAATAGCAAAGGTTGTAATTATGGTCCTCCATATGAATGGCAAGTTTACAATGCACTTGGTGGCAGTCATGGAGTGCCAAAAGTACACTATAAGGGTCGACAAGGAGACTATTACGTCATGGTCATGGACATGTTAGGGCCGAGCTTGTGGGATGTATGGAATTCTTCAGGGCAGGCGTGA ATGCCGGTGCTTCGCAGAGGTGTGCGCAGAGGCCGCGGTAGGATCGTTCAGAAGCACTTCGAAGAGCCTCCGCCGGCTGGAGCTTACGTAAAAACTCGAGCTGCGGTCGCCAGAGAAGCTGCGGAGGCGAGACCGAGGCCAAGAACGAGGTTGGCAATCAAAGAATTAAACAAGAATCAGGAGGAAGAGGTGATTGTTATATCTGAGAGGGATACTGATTTGGAGGACAAAAAAGTGCAAGGGCTCGAGGTAGAAGAAGACAGGGGCGCTATGGGTGATGAAAGTGGCGGCTTGAGTGCTAATAAGGCTGCTGGCATAGAGGAAGAGGGTAGCTCAGCGCCTTTTCCGGAAAAGGTCCAAGTAGGAGGGTCTCCAGTGTATAAAATAGAGAGAAAACTGGGCAAAGGTGGATTTGGGCAAGTATTTGTTGGTCGTCGGCTTACAGGTGGAAATGATCGTGCAACAGGGGCTGCAGCTACCGAGGTTGCTCTTAAATTTGAACACAGAAATAGCAAAGGTTGTAATTATGGTCCTCCATATGAATGGCAAGTTTACAATGCACTTGGTGGCAGTCATGGAGTGCCAAAAGTACACTATAAGGGTCGACAAGGAGACTATTACGTCATGGTCATGGACATGTTAGGGCCGAGCTTGTGGGATGTATGGAATTCTTCAGGGCAGGCGTGA MPVLRRGVRRGRGRIVQKHFEEPPPAGAYVKTRAAVAREAAEARPRPRTRLAIKELNKNQEEEVIVISERDTDLEDKKVQGLEVEEDRGAMGDESGGLSANKAAGIEEEGSSAPFPEKVQVGGSPVYKIERKLGKGGFGQVFVGRRLTGGNDRATGAAATEVALKFEHRNSKGCNYGPPYEWQVYNALGGSHGVPKVHYKGRQGDYYVMVMDMLGPSLWDVWNSSGQA
BLAST of Carg06936-RA vs. NCBI nr
Match: XP_022985791.1 (casein kinase 1-like protein HD16 isoform X1 [Cucurbita maxima]) HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106 Identity = 226/228 (99.12%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of Carg06936-RA vs. NCBI nr
Match: XP_022985792.1 (casein kinase 1-like protein HD16 isoform X2 [Cucurbita maxima]) HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106 Identity = 226/228 (99.12%), Postives = 228/228 (100.00%), Query Frame = 0
BLAST of Carg06936-RA vs. NCBI nr
Match: XP_023512700.1 (casein kinase 1-like protein HD16 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106 Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of Carg06936-RA vs. NCBI nr
Match: XP_023512698.1 (casein kinase 1-like protein HD16 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 395.6 bits (1015), Expect = 1.2e-106 Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of Carg06936-RA vs. NCBI nr
Match: XP_022944137.1 (casein kinase 1-like protein HD16 isoform X1 [Cucurbita moschata]) HSP 1 Score: 394.4 bits (1012), Expect = 2.6e-106 Identity = 226/228 (99.12%), Postives = 227/228 (99.56%), Query Frame = 0
BLAST of Carg06936-RA vs. TAIR10
Match: AT3G13670.1 (Protein kinase family protein) HSP 1 Score: 229.6 bits (584), Expect = 2.0e-60 Identity = 100/119 (84.03%), Postives = 115/119 (96.64%), Query Frame = 0
BLAST of Carg06936-RA vs. TAIR10
Match: AT5G18190.1 (Protein kinase family protein) HSP 1 Score: 221.5 bits (563), Expect = 5.4e-58 Identity = 102/132 (77.27%), Postives = 116/132 (87.88%), Query Frame = 0
BLAST of Carg06936-RA vs. TAIR10
Match: AT3G03940.1 (Protein kinase family protein) HSP 1 Score: 207.6 bits (527), Expect = 8.1e-54 Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 0
BLAST of Carg06936-RA vs. TAIR10
Match: AT2G25760.2 (Protein kinase family protein) HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52 Identity = 92/121 (76.03%), Postives = 107/121 (88.43%), Query Frame = 0
BLAST of Carg06936-RA vs. TAIR10
Match: AT5G57015.1 (casein kinase I-like 12) HSP 1 Score: 67.8 bits (164), Expect = 1.0e-11 Identity = 36/97 (37.11%), Postives = 56/97 (57.73%), Query Frame = 0
BLAST of Carg06936-RA vs. Swiss-Prot
Match: sp|Q852L0|HD16N_ORYSJ (Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 1.8e-50 Identity = 100/151 (66.23%), Postives = 115/151 (76.16%), Query Frame = 0
BLAST of Carg06936-RA vs. Swiss-Prot
Match: sp|Q6QNM1|KC1_TOXGO (Casein kinase I OS=Toxoplasma gondii OX=5811 PE=2 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.3e-13 Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 0
BLAST of Carg06936-RA vs. Swiss-Prot
Match: sp|P40235|HHP1_SCHPO (Casein kinase I homolog hhp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=hhp1 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 9.5e-12 Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 0
BLAST of Carg06936-RA vs. Swiss-Prot
Match: sp|Q8N752|KC1AL_HUMAN (Casein kinase I isoform alpha-like OS=Homo sapiens OX=9606 GN=CSNK1A1L PE=2 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 2.1e-11 Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 0
BLAST of Carg06936-RA vs. Swiss-Prot
Match: sp|P67827|KC1A_BOVIN (Casein kinase I isoform alpha OS=Bos taurus OX=9913 GN=CSNK1A1 PE=1 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 2.8e-11 Identity = 43/114 (37.72%), Postives = 64/114 (56.14%), Query Frame = 0
BLAST of Carg06936-RA vs. TrEMBL
Match: tr|A0A1S3BNS5|A0A1S3BNS5_CUCME (uncharacterized protein LOC103491568 OS=Cucumis melo OX=3656 GN=LOC103491568 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 6.5e-98 Identity = 197/229 (86.03%), Postives = 201/229 (87.77%), Query Frame = 0
BLAST of Carg06936-RA vs. TrEMBL
Match: tr|A0A0A0L0H0|A0A0A0L0H0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285680 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 6.5e-98 Identity = 197/229 (86.03%), Postives = 201/229 (87.77%), Query Frame = 0
BLAST of Carg06936-RA vs. TrEMBL
Match: tr|A0A2I4HQH1|A0A2I4HQH1_9ROSI (casein kinase 1-like protein HD16 OS=Juglans regia OX=51240 GN=LOC109020373 PE=4 SV=1) HSP 1 Score: 294.3 bits (752), Expect = 2.4e-76 Identity = 178/228 (78.07%), Postives = 195/228 (85.53%), Query Frame = 0
BLAST of Carg06936-RA vs. TrEMBL
Match: tr|I1KZH6|I1KZH6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803733 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74 Identity = 148/227 (65.20%), Postives = 163/227 (71.81%), Query Frame = 0
BLAST of Carg06936-RA vs. TrEMBL
Match: tr|I1KZH7|I1KZH7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100803733 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74 Identity = 148/227 (65.20%), Postives = 163/227 (71.81%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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