Carg06898-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACAGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACAGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA ATGGCCTCCATGTCTATCACAGCCTCCTTCCTCCCCTTCACAGCCACCCAACCCTCCGCCGCCGCCGCCGCCGCCCGAAGAGCCCTCTTCGTCACCAAGGCCTCCACCTCTGCCGCTGCCACTGACAGCAACTCCAACGCCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGCCAAGGGCGGCGGGAGTTAGTGGCGGCCGCTGTGACTGTGGCAGCTGCGACCTTCGCGAAGGCGGCGATGGCGGATGAGCCCCCACGTGGCTCCGCTGAGGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCCCGTATATGCCGCAAATGA MASMSITASFLPFTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK
BLAST of Carg06898-RA vs. NCBI nr
Match: XP_023512156.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023512157.1 photosystem II 5 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 124.4 bits (311), Expect = 2.4e-25 Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0
BLAST of Carg06898-RA vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima]) HSP 1 Score: 120.2 bits (300), Expect = 4.6e-24 Identity = 95/112 (84.82%), Postives = 95/112 (84.82%), Query Frame = 0
BLAST of Carg06898-RA vs. NCBI nr
Match: XP_022148791.1 (photosystem II 5 kDa protein, chloroplastic [Momordica charantia]) HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17 Identity = 63/111 (56.76%), Postives = 65/111 (58.56%), Query Frame = 0
BLAST of Carg06898-RA vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]) HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11 Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of Carg06898-RA vs. NCBI nr
Match: CDP14289.1 (unnamed protein product [Coffea canephora]) HSP 1 Score: 73.9 bits (180), Expect = 3.8e-10 Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of Carg06898-RA vs. TAIR10
Match: AT1G51400.1 (Photosystem II 5 kD protein) HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10 Identity = 43/112 (38.39%), Postives = 55/112 (49.11%), Query Frame = 0
BLAST of Carg06898-RA vs. TAIR10
Match: AT3G21055.1 (photosystem II subunit T) HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04 Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 0
BLAST of Carg06898-RA vs. Swiss-Prot
Match: sp|P31336|PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 5.0e-06 Identity = 30/53 (56.60%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of Carg06898-RA vs. Swiss-Prot
Match: sp|B3EWI4|PST2_PETHY (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of Carg06898-RA vs. TrEMBL
Match: tr|A0A1S3BML8|A0A1S3BML8_CUCME (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11 Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 0
BLAST of Carg06898-RA vs. TrEMBL
Match: tr|A0A068V1C0|A0A068V1C0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00040594001 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10 Identity = 41/56 (73.21%), Postives = 43/56 (76.79%), Query Frame = 0
BLAST of Carg06898-RA vs. TrEMBL
Match: tr|A0A0A0KIB2|A0A0A0KIB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 3.3e-10 Identity = 40/53 (75.47%), Postives = 40/53 (75.47%), Query Frame = 0
BLAST of Carg06898-RA vs. TrEMBL
Match: tr|G7IWU5|G7IWU5_MEDTR (Photosystem II 5 kDa protein OS=Medicago truncatula OX=3880 GN=11438275 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.6e-09 Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0
BLAST of Carg06898-RA vs. TrEMBL
Match: tr|A0A1Q3DDJ9|A0A1Q3DDJ9_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_33930 PE=4 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.7e-09 Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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