Carg06428-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06428-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hydroxyproline-rich glycoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_051 : 406667 .. 407992 (+)
Sequence length	1326

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACACCGCCGCCACTTCGGCCGGAACCAACTTCCGGCCGCCGCGACCTGCGCCGTACTACACCATTTCAATTCCTTAATTTCGACGCCTTTCCAATTCTCTTTCTCGTCATTTCTCTGTGTTTCATCTTTGTTGTCTCAATTTCTCCATTCTACAGTTTCAGTTTCAGTTTTCGTTCATTTAAGCCTCAATCTACATGGAAAAGCTTGGACTTCCTCTGTTTGGCTTTGGTCCTCTTCGCCATTGCCTGTGGGCTTCTCAGCAAAAACAATGGCGAAAACACAGTTCGTGAAGAAATTTACAGAGCTTCTGTTACTTCAAATGATTCAGAGCTGAGCTACAAGTCAAACCCATCGATCCCAAATCAATGGAATGGCTACACAGATCGGACGGATCAGATTCTTCTCCATTATCCGCCGGAGATCGCTGGAGTTGAATACTGGCGGCTTTCCGGCGGTGGTTATATAACCAATTATCAATCTATCAGTTCAGATTCTCTTCAGCATTGTAGAAATTTGAAGGAATTTGAAGAAGGGTCTGATTCCAAGAGAGTTACTAAAGCTGCATTTTCTGTTAAGGATGAAGAAATTTCCCCTTCGTTTTCGCCTCTGTATCAGATTTCTGTTCCTCCATTAGTGACACCTCCGCAGATTTCTTCGCCGCCGGGTGCGGTGGTTGTAGCGGAAGTAGAGAGAATAAATGAAGGGGATGGAGGTTTTGAACCTGAATTGCTCGGAGAGGATTTTCAGGCGATGGAAGTTGAAATAAGCAAAAATGAGAAACAGAGAGAGGTGGAGAGTAAAGAAACAAAGAGGAAGAAGAACAAGAACAAGAACAAGATGAAGAAATGGCAAAAGGGTGTTGAGAATTTCAAAGAATTCGTTACTCCACAACATCGGTTCAATCGGAATTTATCTCCGCCGCCAGCGCCAGGGCCGCCGGTGACGGTTCATCAGTATCAAATTTCGAGTATAGTAGGCGAAACAAAAAGAGGTTTCCCAGCTCCACCAGAATCCTCGCCGCAAAAACTCATTGCTGTGAGAACCCAGAATAGCACAGTTGAGCAACCGCGGTCAGGTGCATTAGCTCCGCCGTCGACGACGGCGGAATTGCAGATTCTATTGGAAGGGAAATCGAAAAGAAACGAAAATGCAGAGAGAAAAGGAGCGAGATTTTGTGGAAGTCCGGATGTGAACAGTAAAGCTGATAGCTTCATCGAGACATTCAGAGCGGGTTTGAAATTGGAGAGGATGAACTCGATGAAGGAGAGGCAGAGGAAGACGAGGACATCCATTTTGGGCCGTAAGGGCCCAGAACAGTAA

mRNA sequence

ATGGACACACCGCCGCCACTTCGGCCGGAACCAACTTCCGGCCGCCGCGACCTGCGCCGTACTACACCATTTCAATTCCTTAATTTCGACGCCTTTCCAATTCTCTTTCTCGTCATTTCTCTGTGTTTCATCTTTGTTGTCTCAATTTCTCCATTCTACAGTTTCAGTTTCAGTTTTCGTTCATTTAAGCCTCAATCTACATGGAAAAGCTTGGACTTCCTCTGTTTGGCTTTGGTCCTCTTCGCCATTGCCTGTGGGCTTCTCAGCAAAAACAATGGCGAAAACACAGTTCGTGAAGAAATTTACAGAGCTTCTGTTACTTCAAATGATTCAGAGCTGAGCTACAAGTCAAACCCATCGATCCCAAATCAATGGAATGGCTACACAGATCGGACGGATCAGATTCTTCTCCATTATCCGCCGGAGATCGCTGGAGTTGAATACTGGCGGCTTTCCGGCGGTGGTTATATAACCAATTATCAATCTATCAGTTCAGATTCTCTTCAGCATTGTAGAAATTTGAAGGAATTTGAAGAAGGGTCTGATTCCAAGAGAGTTACTAAAGCTGCATTTTCTGTTAAGGATGAAGAAATTTCCCCTTCGTTTTCGCCTCTGTATCAGATTTCTGTTCCTCCATTAGTGACACCTCCGCAGATTTCTTCGCCGCCGGGTGCGGTGGTTGTAGCGGAAGTAGAGAGAATAAATGAAGGGGATGGAGGTTTTGAACCTGAATTGCTCGGAGAGGATTTTCAGGCGATGGAAGTTGAAATAAGCAAAAATGAGAAACAGAGAGAGGTGGAGAGTAAAGAAACAAAGAGGAAGAAGAACAAGAACAAGAACAAGATGAAGAAATGGCAAAAGGGTGTTGAGAATTTCAAAGAATTCGTTACTCCACAACATCGGTTCAATCGGAATTTATCTCCGCCGCCAGCGCCAGGGCCGCCGGTGACGGTTCATCAGTATCAAATTTCGAGTATAGTAGGCGAAACAAAAAGAGGTTTCCCAGCTCCACCAGAATCCTCGCCGCAAAAACTCATTGCTGTGAGAACCCAGAATAGCACAGTTGAGCAACCGCGGTCAGGTGCATTAGCTCCGCCGTCGACGACGGCGGAATTGCAGATTCTATTGGAAGGGAAATCGAAAAGAAACGAAAATGCAGAGAGAAAAGGAGCGAGATTTTGTGGAAGTCCGGATGTGAACAGTAAAGCTGATAGCTTCATCGAGACATTCAGAGCGGGTTTGAAATTGGAGAGGATGAACTCGATGAAGGAGAGGCAGAGGAAGACGAGGACATCCATTTTGGGCCGTAAGGGCCCAGAACAGTAA

Coding sequence (CDS)

ATGGACACACCGCCGCCACTTCGGCCGGAACCAACTTCCGGCCGCCGCGACCTGCGCCGTACTACACCATTTCAATTCCTTAATTTCGACGCCTTTCCAATTCTCTTTCTCGTCATTTCTCTGTGTTTCATCTTTGTTGTCTCAATTTCTCCATTCTACAGTTTCAGTTTCAGTTTTCGTTCATTTAAGCCTCAATCTACATGGAAAAGCTTGGACTTCCTCTGTTTGGCTTTGGTCCTCTTCGCCATTGCCTGTGGGCTTCTCAGCAAAAACAATGGCGAAAACACAGTTCGTGAAGAAATTTACAGAGCTTCTGTTACTTCAAATGATTCAGAGCTGAGCTACAAGTCAAACCCATCGATCCCAAATCAATGGAATGGCTACACAGATCGGACGGATCAGATTCTTCTCCATTATCCGCCGGAGATCGCTGGAGTTGAATACTGGCGGCTTTCCGGCGGTGGTTATATAACCAATTATCAATCTATCAGTTCAGATTCTCTTCAGCATTGTAGAAATTTGAAGGAATTTGAAGAAGGGTCTGATTCCAAGAGAGTTACTAAAGCTGCATTTTCTGTTAAGGATGAAGAAATTTCCCCTTCGTTTTCGCCTCTGTATCAGATTTCTGTTCCTCCATTAGTGACACCTCCGCAGATTTCTTCGCCGCCGGGTGCGGTGGTTGTAGCGGAAGTAGAGAGAATAAATGAAGGGGATGGAGGTTTTGAACCTGAATTGCTCGGAGAGGATTTTCAGGCGATGGAAGTTGAAATAAGCAAAAATGAGAAACAGAGAGAGGTGGAGAGTAAAGAAACAAAGAGGAAGAAGAACAAGAACAAGAACAAGATGAAGAAATGGCAAAAGGGTGTTGAGAATTTCAAAGAATTCGTTACTCCACAACATCGGTTCAATCGGAATTTATCTCCGCCGCCAGCGCCAGGGCCGCCGGTGACGGTTCATCAGTATCAAATTTCGAGTATAGTAGGCGAAACAAAAAGAGGTTTCCCAGCTCCACCAGAATCCTCGCCGCAAAAACTCATTGCTGTGAGAACCCAGAATAGCACAGTTGAGCAACCGCGGTCAGGTGCATTAGCTCCGCCGTCGACGACGGCGGAATTGCAGATTCTATTGGAAGGGAAATCGAAAAGAAACGAAAATGCAGAGAGAAAAGGAGCGAGATTTTGTGGAAGTCCGGATGTGAACAGTAAAGCTGATAGCTTCATCGAGACATTCAGAGCGGGTTTGAAATTGGAGAGGATGAACTCGATGAAGGAGAGGCAGAGGAAGACGAGGACATCCATTTTGGGCCGTAAGGGCCCAGAACAGTAA

Protein sequence

MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFRSFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPSIPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEGSDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGGFEPELLGEDFQAMEVEISKNEKQREVESKETKRKKNKNKNKMKKWQKGVENFKEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQNSTVEQPRSGALAPPSTTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLERMNSMKERQRKTRTSILGRKGPEQ

Homology

[Close]

BLAST of Carg06428-RA vs. NCBI nr
Match: XP_022956265.1 (uncharacterized protein LOC111458018 [Cucurbita moschata])

HSP 1 Score: 710.7 bits (1833), Expect = 3.1e-201
Identity = 412/441 (93.42%), Postives = 416/441 (94.33%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR
Sbjct: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
           SFKP+STWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS
Sbjct: 61  SFKPRSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEG 180
           IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEG
Sbjct: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEG 180

Query: 181 SDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGG 240
            DSKRV+KAAFSV DEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGG
Sbjct: 181 YDSKRVSKAAFSVNDEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGG 240

Query: 241 FEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTPQH 300
           FEPE LGEDFQAM+   XXXXXXXXXXXXXXXXXXXXXXXXXX WQK VENFKEF TPQH
Sbjct: 241 FEPEWLGEDFQAMKVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXWQKDVENFKEFFTPQH 300

Query: 301 RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQXXXXXXXXX 360
           RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPA               XXXXXXXXX
Sbjct: 301 RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAXXXXXXXXXXXXXXXXXXXXXXXX 360

Query: 361 XXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLERMN 420
           XXXXXXXX AELQILLEG+SKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLERMN
Sbjct: 361 XXXXXXXXXAELQILLEGESKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLERMN 420

Query: 421 SMKERQRKTRTSILGRKGPEQ 442
           SMKERQRKTRTSILGRKGPEQ
Sbjct: 421 SMKERQRKTRTSILGRKGPEQ 441

[Close]

BLAST of Carg06428-RA vs. NCBI nr
Match: XP_022980613.1 (uncharacterized protein LOC111479931 [Cucurbita maxima])

HSP 1 Score: 709.1 bits (1829), Expect = 9.1e-201
Identity = 401/443 (90.52%), Postives = 409/443 (92.33%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MDTPPPLRPEPTS RRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR
Sbjct: 31  MDTPPPLRPEPTSDRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 90

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
           SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS
Sbjct: 91  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 150

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEG 180
           IPNQWNGY DRT+QILLHYPPEIAGVEYWRLSGGG ITNYQS+SS SLQH  NLKEFEEG
Sbjct: 151 IPNQWNGYADRTNQILLHYPPEIAGVEYWRLSGGGNITNYQSVSSGSLQHYPNLKEFEEG 210

Query: 181 SDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGG 240
            DSKRV+KAAFSV DEEISPSFS LYQISVPPLVTPPQ+SSPPGAVVVAEVERIN+GDGG
Sbjct: 211 YDSKRVSKAAFSVSDEEISPSFSSLYQISVPPLVTPPQLSSPPGAVVVAEVERINDGDGG 270

Query: 241 FEPELLGEDFQAME--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTP 300
           FEPELLGEDFQAME  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTP
Sbjct: 271 FEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTP 330

Query: 301 QHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQXXXXXXX 360
           QHRFNRNLSPP  PGPPVTVHQYQISS VGE KRGFPAPPESSPQKLIAVRTQ       
Sbjct: 331 QHRFNRNLSPPLVPGPPVTVHQYQISSRVGEAKRGFPAPPESSPQKLIAVRTQNSTVEQP 390

Query: 361 XXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLER 420
                     TAEL IL++G+SKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLER
Sbjct: 391 PSGALAPPSTTAELHILMKGESKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLER 450

Query: 421 MNSMKERQRKTRTSILGRKGPEQ 442
           MNSMKER RKTRTSILGRKGPEQ
Sbjct: 451 MNSMKER-RKTRTSILGRKGPEQ 472

[Close]

BLAST of Carg06428-RA vs. NCBI nr
Match: XP_023528506.1 (uncharacterized protein LOC111791412 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 669.8 bits (1727), Expect = 6.1e-189
Identity = 379/441 (85.94%), Postives = 388/441 (87.98%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPIL                        R
Sbjct: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILXXXXXXXXXXXXXXXXXXXXXXXXR 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
           S KPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSE+SYKSNPS
Sbjct: 61  SLKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSEMSYKSNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKEFEEG 180
           IPNQ NGY DRTDQILLHYPPEIAGVEYWRLSGGGYITNYQ ISSDSLQHCRNLKEFEEG
Sbjct: 121 IPNQRNGYADRTDQILLHYPPEIAGVEYWRLSGGGYITNYQCISSDSLQHCRNLKEFEEG 180

Query: 181 SDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVTPPQISSPPGAVVVAEVERINEGDGG 240
            DSKR ++A FSV DEE SPSFS LYQISVPPLVTPPQ+SSPPGAVVVAEVERINEGDG 
Sbjct: 181 FDSKRDSRATFSVNDEETSPSFSRLYQISVPPLVTPPQLSSPPGAVVVAEVERINEGDGD 240

Query: 241 FEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTPQH 300
           FEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTPQH
Sbjct: 241 FEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENFKEFVTPQH 300

Query: 301 RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQXXXXXXXXX 360
           RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFP+PPESSPQ LIAVRTQ         
Sbjct: 301 RFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPSPPESSPQTLIAVRTQNSTVEQPPS 360

Query: 361 XXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRAGLKLERMN 420
                   TAELQIL++G+SKRNE+AERKGARFCGSPDVNSKADSFIETFRAGLKLERMN
Sbjct: 361 GGLAPPSTTAELQILMKGESKRNEDAERKGARFCGSPDVNSKADSFIETFRAGLKLERMN 420

Query: 421 SMKERQRKTRTSILGRKGPEQ 442
           SMKERQRKTRTSILGRKGPEQ
Sbjct: 421 SMKERQRKTRTSILGRKGPEQ 441

[Close]

BLAST of Carg06428-RA vs. NCBI nr
Match: KGN59806.1 (hypothetical protein Csa_3G848160 [Cucumis sativus])

HSP 1 Score: 471.9 bits (1213), Expect = 2.4e-129
Identity = 289/447 (64.65%), Postives = 327/447 (73.15%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MD PPP RPEPT  RR LRRTTPFQ            +ISLCFIF V +SPF+SFSF F 
Sbjct: 1   MDVPPPTRPEPTPDRRYLRRTTPFQ----------SFIISLCFIFFVLVSPFHSFSFHF- 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
            FK QS WKSLDFL LALVLFAIACGLLSKNNGENT+ EEIYR + T++DSE ++KSNPS
Sbjct: 61  -FKSQSPWKSLDFLSLALVLFAIACGLLSKNNGENTIHEEIYRPTFTADDSEHTHKSNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLS-GGGYITNYQSISSDSLQHCRNLKEFEE 180
            PNQWNGY+DRTDQILLH+PPE+AGVEYW+LS G  Y+TNY S+SSDSLQHC+NLK+ ++
Sbjct: 121 TPNQWNGYSDRTDQILLHHPPEVAGVEYWKLSYGTNYMTNYHSLSSDSLQHCQNLKDLDD 180

Query: 181 GSDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVT-PPQISSPP------GAVVVAEVE 240
           G  S R  +A F V +EE S SFSPL+Q SVP L+T PPQ SSPP      GA+V AEVE
Sbjct: 181 GFVSNRAFRATFPVYNEETSSSFSPLHQFSVPSLMTEPPQPSSPPVKIPPTGAIVEAEVE 240

Query: 241 RINEGDGGFEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENF 300
           RINEGDG FEPEL G DFQA+E      XXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 241 RINEGDGDFEPELPGLDFQALEGEINENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 KEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQX 360
            EF+TPQHR+N   S P    PPV VH YQ SSI+GETK+  PA PES+  KLIAV  + 
Sbjct: 301 XEFLTPQHRYNNRPSSP----PPVAVHHYQTSSIIGETKQDLPASPESAAHKLIAVSVRF 360

Query: 361 XXXXXXXXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRA 420
                             ELQI+ +G+S R ENAERK  +FC SPDVNSKAD+FIE FR 
Sbjct: 361 QNSTGEQPPSTG-----EELQIVTKGESTRTENAERKSTKFCESPDVNSKADNFIERFRE 420

Query: 421 GLKLERMNSMKERQRKTRTSILGRKGP 440
           GLKLERMNS+KE+QRKTRTSILGRKGP
Sbjct: 421 GLKLERMNSIKEKQRKTRTSILGRKGP 426

[Close]

BLAST of Carg06428-RA vs. NCBI nr
Match: ADN33733.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 404.4 bits (1038), Expect = 4.8e-109
Identity = 264/448 (58.93%), Postives = 300/448 (66.96%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MD PPP+RPEPTS RR LRRTTPFQ           L+ISLCFIF V +SPF+SFSF F 
Sbjct: 1   MDIPPPIRPEPTSDRRYLRRTTPFQ----------SLIISLCFIFFVLVSPFHSFSFHF- 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
            FK QS WKSLDFL LALVLFAIACGLLSKNNGENT+ EE YR + TS+DSE ++K NPS
Sbjct: 61  -FKSQSPWKSLDFLSLALVLFAIACGLLSKNNGENTIHEETYRPTFTSDDSEHTHKPNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLS-GGGYITNYQSISSDSLQHCRNLKEFEE 180
            P+QWNGY+DRTDQILLH+PPE+AGVEYW+LS G  Y+TNYQS+SSDSLQHC+NLK+F++
Sbjct: 121 TPDQWNGYSDRTDQILLHHPPEVAGVEYWKLSYGTNYMTNYQSLSSDSLQHCQNLKDFDD 180

Query: 181 GSDSKRVTKAAFSVKDEEISPSFSP-------LYQISVPPLVTPPQISSPPGAVVVAEVE 240
           G    R ++A F V +EEIS SFSP                             V AEVE
Sbjct: 181 GFVYNRASRATFPVYNEEISSSFSPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAEVE 240

Query: 241 RINEGDGGFEPELLGEDFQAME-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVEN 300
           RINEGDG FEPEL G DFQA+E      XXXXXXXXXXXXXXXXXXXXXXXX       N
Sbjct: 241 RINEGDGDFEPELPGLDFQALEGDIDENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 300

Query: 301 FKEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQ 360
           FKEF+TPQHR+N                         +     PAPPES+ QKLIAVR Q
Sbjct: 301 FKEFLTPQHRYNNRXXXXXXXXXXXXXXXXXXXXXXXD----LPAPPESAAQKLIAVRFQ 360

Query: 361 XXXXXXXXXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFR 420
                              E Q++ +G+S R ENAERK  +FC SPDVNSKAD+FIE FR
Sbjct: 361 -------NSAGEQPPFTAEESQLVTKGESTRKENAERKSTKFCESPDVNSKADNFIERFR 420

Query: 421 AGLKLERMNSMKERQRKTRTSILGRKGP 440
            GLKLERMNS+KE+QRKTRTSILGRK P
Sbjct: 421 EGLKLERMNSIKEKQRKTRTSILGRKSP 425

[Close]

BLAST of Carg06428-RA vs. TAIR10
Match: AT1G72790.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 53.9 bits (128), Expect = 2.9e-07
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 387 ERKGARFCGSPDVNSKADSFIETFRAGLKLERMNSMK 424
           E  G+ FC SPDV++KAD FI  FRAGLKLE+MNS+K
Sbjct: 498 EAAGSMFCPSPDVDTKADDFIARFRAGLKLEKMNSVK 534

[Close]

BLAST of Carg06428-RA vs. TrEMBL
Match: tr|A0A0A0LIC7|A0A0A0LIC7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848160 PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 1.6e-129
Identity = 289/447 (64.65%), Postives = 327/447 (73.15%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MD PPP RPEPT  RR LRRTTPFQ            +ISLCFIF V +SPF+SFSF F 
Sbjct: 1   MDVPPPTRPEPTPDRRYLRRTTPFQ----------SFIISLCFIFFVLVSPFHSFSFHF- 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
            FK QS WKSLDFL LALVLFAIACGLLSKNNGENT+ EEIYR + T++DSE ++KSNPS
Sbjct: 61  -FKSQSPWKSLDFLSLALVLFAIACGLLSKNNGENTIHEEIYRPTFTADDSEHTHKSNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLS-GGGYITNYQSISSDSLQHCRNLKEFEE 180
            PNQWNGY+DRTDQILLH+PPE+AGVEYW+LS G  Y+TNY S+SSDSLQHC+NLK+ ++
Sbjct: 121 TPNQWNGYSDRTDQILLHHPPEVAGVEYWKLSYGTNYMTNYHSLSSDSLQHCQNLKDLDD 180

Query: 181 GSDSKRVTKAAFSVKDEEISPSFSPLYQISVPPLVT-PPQISSPP------GAVVVAEVE 240
           G  S R  +A F V +EE S SFSPL+Q SVP L+T PPQ SSPP      GA+V AEVE
Sbjct: 181 GFVSNRAFRATFPVYNEETSSSFSPLHQFSVPSLMTEPPQPSSPPVKIPPTGAIVEAEVE 240

Query: 241 RINEGDGGFEPELLGEDFQAMEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVENF 300
           RINEGDG FEPEL G DFQA+E      XXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 241 RINEGDGDFEPELPGLDFQALEGEINENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 KEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQX 360
            EF+TPQHR+N   S P    PPV VH YQ SSI+GETK+  PA PES+  KLIAV  + 
Sbjct: 301 XEFLTPQHRYNNRPSSP----PPVAVHHYQTSSIIGETKQDLPASPESAAHKLIAVSVRF 360

Query: 361 XXXXXXXXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFRA 420
                             ELQI+ +G+S R ENAERK  +FC SPDVNSKAD+FIE FR 
Sbjct: 361 QNSTGEQPPSTG-----EELQIVTKGESTRTENAERKSTKFCESPDVNSKADNFIERFRE 420

Query: 421 GLKLERMNSMKERQRKTRTSILGRKGP 440
           GLKLERMNS+KE+QRKTRTSILGRKGP
Sbjct: 421 GLKLERMNSIKEKQRKTRTSILGRKGP 426

[Close]

BLAST of Carg06428-RA vs. TrEMBL
Match: tr|A0A1S4DWQ5|A0A1S4DWQ5_CUCME (uncharacterized protein LOC103490038 OS=Cucumis melo OX=3656 GN=LOC103490038 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 264/448 (58.93%), Postives = 300/448 (66.96%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MD PPP+RPEPTS RR LRRTTPFQ           L+ISLCFIF V +SPF+SFSF F 
Sbjct: 35  MDIPPPIRPEPTSDRRYLRRTTPFQ----------SLIISLCFIFFVLVSPFHSFSFHF- 94

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
            FK QS WKSLDFL LALVLFAIACGLLSKNNGENT+ EE YR + TS+DSE ++K NPS
Sbjct: 95  -FKSQSPWKSLDFLSLALVLFAIACGLLSKNNGENTIHEETYRPTFTSDDSEHTHKPNPS 154

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLS-GGGYITNYQSISSDSLQHCRNLKEFEE 180
            P+QWNGY+DRTDQILLH+PPE+AGVEYW+LS G  Y+TNYQS+SSDSLQHC+NLK+F++
Sbjct: 155 TPDQWNGYSDRTDQILLHHPPEVAGVEYWKLSYGTNYMTNYQSLSSDSLQHCQNLKDFDD 214

Query: 181 GSDSKRVTKAAFSVKDEEISPSFSP-------LYQISVPPLVTPPQISSPPGAVVVAEVE 240
           G    R ++A F V +EEIS SFSP                             V AEVE
Sbjct: 215 GFVYNRASRATFPVYNEEISSSFSPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAEVE 274

Query: 241 RINEGDGGFEPELLGEDFQAME-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVEN 300
           RINEGDG FEPEL G DFQA+E      XXXXXXXXXXXXXXXXXXXXXXXX       N
Sbjct: 275 RINEGDGDFEPELPGLDFQALEGDIDENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 334

Query: 301 FKEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQ 360
           FKEF+TPQHR+N                         +     PAPPES+ QKLIAVR Q
Sbjct: 335 FKEFLTPQHRYNNRXXXXXXXXXXXXXXXXXXXXXXXD----LPAPPESAAQKLIAVRFQ 394

Query: 361 XXXXXXXXXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFR 420
                              E Q++ +G+S R ENAERK  +FC SPDVNSKAD+FIE FR
Sbjct: 395 -------NSAGEQPPFTAEESQLVTKGESTRKENAERKSTKFCESPDVNSKADNFIERFR 454

Query: 421 AGLKLERMNSMKERQRKTRTSILGRKGP 440
            GLKLERMNS+KE+QRKTRTSILGRK P
Sbjct: 455 EGLKLERMNSIKEKQRKTRTSILGRKSP 459

[Close]

BLAST of Carg06428-RA vs. TrEMBL
Match: tr|E5GB91|E5GB91_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.2e-109
Identity = 264/448 (58.93%), Postives = 300/448 (66.96%), Query Frame = 0


Query: 1   MDTPPPLRPEPTSGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFR 60
           MD PPP+RPEPTS RR LRRTTPFQ           L+ISLCFIF V +SPF+SFSF F 
Sbjct: 1   MDIPPPIRPEPTSDRRYLRRTTPFQ----------SLIISLCFIFFVLVSPFHSFSFHF- 60

Query: 61  SFKPQSTWKSLDFLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPS 120
            FK QS WKSLDFL LALVLFAIACGLLSKNNGENT+ EE YR + TS+DSE ++K NPS
Sbjct: 61  -FKSQSPWKSLDFLSLALVLFAIACGLLSKNNGENTIHEETYRPTFTSDDSEHTHKPNPS 120

Query: 121 IPNQWNGYTDRTDQILLHYPPEIAGVEYWRLS-GGGYITNYQSISSDSLQHCRNLKEFEE 180
            P+QWNGY+DRTDQILLH+PPE+AGVEYW+LS G  Y+TNYQS+SSDSLQHC+NLK+F++
Sbjct: 121 TPDQWNGYSDRTDQILLHHPPEVAGVEYWKLSYGTNYMTNYQSLSSDSLQHCQNLKDFDD 180

Query: 181 GSDSKRVTKAAFSVKDEEISPSFSP-------LYQISVPPLVTPPQISSPPGAVVVAEVE 240
           G    R ++A F V +EEIS SFSP                             V AEVE
Sbjct: 181 GFVYNRASRATFPVYNEEISSSFSPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAEVE 240

Query: 241 RINEGDGGFEPELLGEDFQAME-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWQKGVEN 300
           RINEGDG FEPEL G DFQA+E      XXXXXXXXXXXXXXXXXXXXXXXX       N
Sbjct: 241 RINEGDGDFEPELPGLDFQALEGDIDENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 300

Query: 301 FKEFVTPQHRFNRNLSPPPAPGPPVTVHQYQISSIVGETKRGFPAPPESSPQKLIAVRTQ 360
           FKEF+TPQHR+N                         +     PAPPES+ QKLIAVR Q
Sbjct: 301 FKEFLTPQHRYNNRXXXXXXXXXXXXXXXXXXXXXXXD----LPAPPESAAQKLIAVRFQ 360

Query: 361 XXXXXXXXXXXXXXXXXTAELQILLEGKSKRNENAERKGARFCGSPDVNSKADSFIETFR 420
                              E Q++ +G+S R ENAERK  +FC SPDVNSKAD+FIE FR
Sbjct: 361 -------NSAGEQPPFTAEESQLVTKGESTRKENAERKSTKFCESPDVNSKADNFIERFR 420

Query: 421 AGLKLERMNSMKERQRKTRTSILGRKGP 440
            GLKLERMNS+KE+QRKTRTSILGRK P
Sbjct: 421 EGLKLERMNSIKEKQRKTRTSILGRKSP 425

[Close]

BLAST of Carg06428-RA vs. TrEMBL
Match: tr|A0A2P5BE63|A0A2P5BE63_PARAD (Hydroxyproline-rich glycoprotein family protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_246960 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-12
Identity = 63/182 (34.62%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 13  SGRRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFRSFKPQSTWKSLD 72
           S RR L R++   F N  AF I+ +V SL FIF++  +     SF+ + F+P S  KS D
Sbjct: 24  SRRRRLSRSSSL-FFNSGAFLIVLIVTSLAFIFIIIPA---ILSFTSQIFRPHSVKKSWD 83

Query: 73  FLCLALVLFAIACGLLSKNNGENTVREEIYRASVTSNDSELSYKSNPSIPNQWNGYTDRT 132
            L L LVLFAI CG LS+NNGE+     +  +       + + KSNPS P++W  ++D+T
Sbjct: 84  SLNLVLVLFAIVCGFLSRNNGED---RTVSNSXXXXXXXQETRKSNPSTPHRWYEFSDQT 143

Query: 133 DQILLH----------YP------PEIAGVEYWRLSGGGYITNYQSISSDSLQHCRNLKE 179
            +   +          YP        +   E WR     +++NY+ I SD L     L+E
Sbjct: 144 TESFNNGISRLRSSSSYPDLRQESSWVTRDERWRFYDDTHVSNYRPIGSDELHRRWPLQE 198

HSP 2 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 391 ARFCGSPDVNSKADSFIETFRAGLKLERMNSMKERQRKTRTSILGRKGPE 441
           A FC SPDV++KA++FIE FRAGL+LE+ NSMKER R+       R GPE
Sbjct: 524 AMFCPSPDVDTKANNFIERFRAGLRLEKENSMKERDRRR-----SRFGPE 568

[Close]

BLAST of Carg06428-RA vs. TrEMBL
Match: tr|W9QL44|W9QL44_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013462 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 76/217 (35.02%), Postives = 102/217 (47.00%), Query Frame = 0


Query: 15  RRDLRRTTPFQFLNFDAFPILFLVISLCFIFVVSISPFYSFSFSFRSFKPQSTWKSLDFL 74
           RR L R++   F N  A  I  +V +L FIFV+  S     SF+ + F+P S  KS D L
Sbjct: 27  RRRLSRSSSLLF-NSGAVLIALIVTALAFIFVIIPS---FLSFTSQIFRPHSVKKSWDSL 86

Query: 75  CLALVLFAIACGLLSKNNGENT-VREEIYRASVTSNDSELSYKSNPSIPNQWNGYTDRTD 134
            L LVLFAI CG LS+N+ ENT    +  R S     +E   KSNPS P+QW  Y+DRT 
Sbjct: 87  NLVLVLFAIVCGFLSRNSTENTSSNHDDQRVS-----NEGGQKSNPSTPHQWYEYSDRTQ 146

Query: 135 QILLH------------YP------PEIAGVEYWRLSGGGYITNYQSISSD----SLQHC 194
               +            YP        ++  E WR     ++ NY+   SD     LQ+ 
Sbjct: 147 SDSFNSRIYRRMRSSSSYPDLRQESSWVSRDEQWRFYDDTHVANYRPSDSDQHHHQLQYR 206

Query: 195 R---NLKEFEEGSDSKRVTKAAFSVKDEEISPSFSPL 206
           R   N  E E    +K +    F V+ +E S   +PL
Sbjct: 207 RRPWNEPEEEIQLQTKNIEVDTFEVRAKEDSQPSAPL 234

The following BLAST results are available for this feature:

BLAST of Carg06428-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956265.1	3.1e-201	93.42	uncharacterized protein LOC111458018 [Cucurbita moschata]	[more]
XP_022980613.1	9.1e-201	90.52	uncharacterized protein LOC111479931 [Cucurbita maxima]	[more]
XP_023528506.1	6.1e-189	85.94	uncharacterized protein LOC111791412 [Cucurbita pepo subsp. pepo]	[more]
KGN59806.1	2.4e-129	64.65	hypothetical protein Csa_3G848160 [Cucumis sativus]	[more]
ADN33733.1	4.8e-109	58.93	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of Carg06428-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72790.1	2.9e-07	67.57	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Carg06428-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06428-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIC7\|A0A0A0LIC7_CUCSA	1.6e-129	64.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848160 PE=4 SV=1	[more]
tr\|A0A1S4DWQ5\|A0A1S4DWQ5_CUCME	3.2e-109	58.93	uncharacterized protein LOC103490038 OS=Cucumis melo OX=3656 GN=LOC103490038 PE=...	[more]
tr\|E5GB91\|E5GB91_CUCME	3.2e-109	58.93	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A2P5BE63\|A0A2P5BE63_PARAD	3.6e-12	34.62	Hydroxyproline-rich glycoprotein family protein OS=Parasponia andersonii OX=3476...	[more]
tr\|W9QL44\|W9QL44_9ROSA	1.8e-11	35.02	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013462 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06428	Carg06428	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06428-RA.exon.1	Carg06428-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06428-RA.CDS.1	Carg06428-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06428-RA	Carg06428-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..279
None	No IPR available	COILS	Coil	Coil	coord: 369..389
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 420..441
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 32..428
None	No IPR available	PANTHER	PTHR33098:SF6	SUBFAMILY NOT NAMED	coord: 32..428
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 397..426 e-value: 4.4E-7 score: 29.2