Carg05771-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05771-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_033 : 936795 .. 938066 (+)
Sequence length	1272

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCATCGCCACACGCCACATCCGTCGTCTATCGACGGCAGCCACCGCCACCGCCACCGCAACCGCTGCTGCCAAGGCCACAGAAACCGCTGCTGCCAAGGCCACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACAGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTATGCTCAGGAACTCACCATTCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATCGAATCCCTGATCGAATCCCATAAAAATGACCCGAAGATCACTCAGGAGCCCTTTTTGTCCACCTTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGTGATTTCCTTCAATGCGCTATTATGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCCCCTGAGAAGGCCATGCAAATCGTAAGGGGGATGGAGGAAAACGATGTGGAGGTAACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGAATAAGATGATATCAAAAGGGTGTGAACTCGATGTAGGGGCCTATAACGTAAGATTGATGCACGAGCACGGTGGGAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGAACATTTATGTATTACCTCTGTAGAAATGGGGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTAATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGGCCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTTCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA

mRNA sequence

ATGTCCTCCATCGCCACACGCCACATCCGTCGTCTATCGACGGCAGCCACCGCCACCGCCACCGCAACCGCTGCTGCCAAGGCCACAGAAACCGCTGCTGCCAAGGCCACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACAGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTATGCTCAGGAACTCACCATTCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATCGAATCCCTGATCGAATCCCATAAAAATGACCCGAAGATCACTCAGGAGCCCTTTTTGTCCACCTTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGTGATTTCCTTCAATGCGCTATTATGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCCCCTGAGAAGGCCATGCAAATCGTAAGGGGGATGGAGGAAAACGATGTGGAGGTAACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGAATAAGATGATATCAAAAGGGTGTGAACTCGATGTAGGGGCCTATAACGTAAGATTGATGCACGAGCACGGTGGGAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGAACATTTATGTATTACCTCTGTAGAAATGGGGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTAATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGGCCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTTCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA

Coding sequence (CDS)

ATGTCCTCCATCGCCACACGCCACATCCGTCGTCTATCGACGGCAGCCACCGCCACCGCCACCGCAACCGCTGCTGCCAAGGCCACAGAAACCGCTGCTGCCAAGGCCACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACAGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTATGCTCAGGAACTCACCATTCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATCGAATCCCTGATCGAATCCCATAAAAATGACCCGAAGATCACTCAGGAGCCCTTTTTGTCCACCTTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGTGATTTCCTTCAATGCGCTATTATGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCCCCTGAGAAGGCCATGCAAATCGTAAGGGGGATGGAGGAAAACGATGTGGAGGTAACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGAATAAGATGATATCAAAAGGGTGTGAACTCGATGTAGGGGCCTATAACGTAAGATTGATGCACGAGCACGGTGGGAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGAACATTTATGTATTACCTCTGTAGAAATGGGGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTAATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGGCCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTTCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA

Protein sequence

MSSIATRHIRRLSTAATATATATAAAKATETAAAKATATTSSSISISKAKSKLRTEYDPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGESEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASSSSSSSKADDETEE

Homology

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BLAST of Carg05771-RA vs. NCBI nr
Match: XP_022985077.1 (pentatricopeptide repeat-containing protein At4g36680, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 684.1 bits (1764), Expect = 3.0e-193
Identity = 413/423 (97.64%), Postives = 414/423 (97.87%), Query Frame = 0


Query: 1   MSSIATRHIRRLSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 60
           MSSIATRHIRRLSTA      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD
Sbjct: 1   MSSIATRHIRRLSTA------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 60

Query: 61  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120
           KALNIYSSVSSHYTSPVSSRYAQE+TIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST
Sbjct: 61  KALNIYSSVSSHYTSPVSSRYAQEITIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120

Query: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX 180
           LIRSYGRAGMFEHAMRTYNQMEDFGTPRS ISFNALLCAFNHSKQFDKVPQLXXXXXXXX
Sbjct: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSAISFNALLCAFNHSKQFDKVPQLXXXXXXXX 180

Query: 181 XXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGESEEA 240
           XXXXXXXXYGILVKSYCESGSPEKAMQIVR MEENDVEVTAVTFTTILDALYKKGESEEA
Sbjct: 181 XXXXXXXXYGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEA 240

Query: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300
           EKIWNKMISKGCELDVGAYNVRLMHEHG KPEHVEALIEEMANSGMKPDTISYNYLMTCY
Sbjct: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGSKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300

Query: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360
           CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV
Sbjct: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360

Query: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASXXXXXXXXDDE 420
           NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASXXXXXXXXDDE
Sbjct: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASXXXXXXXXDDE 417

Query: 421 TEE 424
           TEE
Sbjct: 421 TEE 417

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BLAST of Carg05771-RA vs. NCBI nr
Match: XP_022929280.1 (scarecrow-like protein 4 [Cucurbita moschata])

HSP 1 Score: 675.2 bits (1741), Expect = 1.4e-190
Identity = 398/409 (97.31%), Postives = 399/409 (97.56%), Query Frame = 0


Query: 1   MSSIATRHIRRLSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 60
           MSSIATRHIRRLST        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD
Sbjct: 11  MSSIATRHIRRLST--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 70

Query: 61  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120
           KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST
Sbjct: 71  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 130

Query: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX 180
           LIRSYG+AGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX
Sbjct: 131 LIRSYGQAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX 190

Query: 181 XXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGESEEA 240
           XXXXXXXXYGILVKSYCESGSPEKAMQIVR MEENDVEVTAVTFTTILDALYKKGESEEA
Sbjct: 191 XXXXXXXXYGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEA 250

Query: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300
           EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY
Sbjct: 251 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 310

Query: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360
           CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV
Sbjct: 311 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 370

Query: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLK WRKVEEALGLAS
Sbjct: 371 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKTWRKVEEALGLAS 411

[Close]

BLAST of Carg05771-RA vs. NCBI nr
Match: XP_023553152.1 (pentatricopeptide repeat-containing protein At4g36680, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 673.7 bits (1737), Expect = 4.1e-190
Identity = 397/408 (97.30%), Postives = 397/408 (97.30%), Query Frame = 0


Query: 1   MSSIATRHIRRLSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 60
           MSSIATRHIRRLSTA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD
Sbjct: 1   MSSIATRHIRRLSTA--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPD 60

Query: 61  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120
           KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST
Sbjct: 61  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120

Query: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX 180
           LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQ XXXXXXXX
Sbjct: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQXXXXXXXXX 180

Query: 181 XXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGESEEA 240
           XXXXXXXX GILVKSYCESGSPEKAMQIVR MEENDVEVTAVTFTTILDALYKKGESEEA
Sbjct: 181 XXXXXXXXXGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEA 240

Query: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300
           EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY
Sbjct: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300

Query: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360
           CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV
Sbjct: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360

Query: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLA 409
           NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLA
Sbjct: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLA 400

[Close]

BLAST of Carg05771-RA vs. NCBI nr
Match: XP_018826496.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Juglans regia])

HSP 1 Score: 517.7 bits (1332), Expect = 3.7e-143
Identity = 251/352 (71.31%), Postives = 293/352 (83.24%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IYSSVS +Y+SP SSRYAQ+LT+RRLAKS RF DIESLIESHK DPKI +EP+
Sbjct: 36  DPDKALEIYSSVSKNYSSPTSSRYAQDLTVRRLAKSHRFSDIESLIESHKKDPKIKEEPY 95

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           LSTLIRSYGRAGMF+HA+RT++QM+D GTPRS +SFNALL A NHSK F+KVPQL     
Sbjct: 96  LSTLIRSYGRAGMFDHALRTFDQMDDLGTPRSAVSFNALLSACNHSKMFNKVPQLFEEIP 155

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      YGILVKSYCE+GSPE A+ I + MEE  VE+TAVTFTTIL ALYK G+S
Sbjct: 156 RKYNVSPDKVSYGILVKSYCEAGSPETAVGIFKEMEEKGVEITAVTFTTILGALYKNGKS 215

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
           EEAEK WN+M+ KGCE+DV AYNVR+M+ HGG+PE+V ALI EM+N+G+KPD ISYNYLM
Sbjct: 216 EEAEKYWNEMVKKGCEIDVAAYNVRIMYAHGGEPENVMALINEMSNAGLKPDAISYNYLM 275

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCY K+GM+DEAK VY+ +E NGCN NAATFRT +YYLCRN DYEKGY VFKESVKVHKI
Sbjct: 276 TCYLKSGMMDEAKAVYEGLEGNGCNPNAATFRTLIYYLCRNEDYEKGYKVFKESVKVHKI 335

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           PD  T++ LVEGL++KKKMK AKGLIRTI+KKFPP+ + AW KVE+ LGL+S
Sbjct: 336 PDFVTMRNLVEGLVKKKKMKAAKGLIRTIKKKFPPNVVNAWTKVEKELGLSS 387

[Close]

BLAST of Carg05771-RA vs. NCBI nr
Match: XP_008453729.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Cucumis melo])

HSP 1 Score: 512.7 bits (1319), Expect = 1.2e-141
Identity = 259/352 (73.58%), Postives = 282/352 (80.11%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IYSSVSSHYTSPV+SRYAQE+TIRRLAKSRRF DIESLIESHKNDPKITQEPF
Sbjct: 50  DPDKALEIYSSVSSHYTSPVTSRYAQEITIRRLAKSRRFKDIESLIESHKNDPKITQEPF 109

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           LSTLIRSYGR GMFEHAMRTYNQM D GTPRS +SFNALL A NHSKQFDKVPQL     
Sbjct: 110 LSTLIRSYGRVGMFEHAMRTYNQMGDLGTPRSALSFNALLSACNHSKQFDKVPQLFDEMP 169

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      YGILVKSYC++GSPEKA+QI+R MEENDVEVTAVTFTTI++ALYKKGES
Sbjct: 170 KRYNFSPNKISYGILVKSYCDAGSPEKALQILREMEENDVEVTAVTFTTIINALYKKGES 229

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
            EAEKIW+KM+SKGCELDVGAYNVRLMHEHGGKPE V+A+IEEMANSG+KPD ISYNYLM
Sbjct: 230 AEAEKIWDKMMSKGCELDVGAYNVRLMHEHGGKPERVQAIIEEMANSGLKPDAISYNYLM 289

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCYCKNGMIDEAK                                       ESVK++KI
Sbjct: 290 TCYCKNGMIDEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVKMNKI 349

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           PD NT+KYLVEGL+EKK M+EAKGLIRT+RKKFPPD+LKAWR+VEE +GLAS
Sbjct: 350 PDFNTLKYLVEGLVEKKMMREAKGLIRTVRKKFPPDTLKAWREVEEGVGLAS 401

[Close]

BLAST of Carg05771-RA vs. TAIR10
Match: AT4G36680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 432.6 bits (1111), Expect = 2.9e-121
Identity = 220/353 (62.32%), Postives = 266/353 (75.35%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IY++VS H  SPVSSRYAQELT+RRLAK RRF DIE+LIESHKNDPKI +EPF
Sbjct: 45  DPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPF 104

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQL-XXXX 177
            STLIRSYG+A MF HAMRT+ QM+ +GTPRS +SFNALL A  HSK FDKVPQL  XXX
Sbjct: 105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXX 164

Query: 178 XXXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGE 237
           X           YGIL+KSYC+SG+PEKA++I+R M+   +EVT + FTTIL +LYKKGE
Sbjct: 165 XRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGE 224

Query: 238 SEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYL 297
            E A+                AYNVR+M      PE V+ LIEEM++ G+KPDTISYNYL
Sbjct: 225 LEVADNXXXXXXXXXXXXXXAAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYL 284

Query: 298 MTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHK 357
           MT YC+ GM+DEAKKVY+ +E N C  NAATFRT +++LC +  YE+GY +FK+SV +HK
Sbjct: 285 MTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHK 344

Query: 358 IPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           IPD NT+K+LV GL+E KK  +AKGLIRT++KKFPP  L AW+K+EE LGL S
Sbjct: 345 IPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGLYS 397

[Close]

BLAST of Carg05771-RA vs. TAIR10
Match: AT2G18520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 408.7 bits (1049), Expect = 4.4e-114
Identity = 203/353 (57.51%), Postives = 262/353 (74.22%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IY SVS++ TSP+SSRYA ELT++RLAKS+RF DIE+LIESHKN+PKI  E F
Sbjct: 45  DPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETF 104

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQL-XXXX 177
           LSTLIRSYGRA MF+HAM+ + +M+  GTPR+V+SFNALL A  HS  F++VPQL     
Sbjct: 105 LSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFP 164

Query: 178 XXXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGE 237
                       YG+L+KSYC+SG PEKAM+I+R ME   VEVT + FTTIL +LYK G 
Sbjct: 165 QRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGL 224

Query: 238 SEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYL 297
            +EAE +W +M++KGC+LD   YNVRLM+     PE V+ L+EEM++ G+KPDT+SYNYL
Sbjct: 225 VDEAESLWIEMVNKGCDLDNTVYNVRLMNAAKESPERVKELMEEMSSVGLKPDTVSYNYL 284

Query: 298 MTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHK 357
           MT YC  GM+ EAKKVY+ +E      NAATFRT +++LC NG Y++G  VFK+S  VHK
Sbjct: 285 MTAYCVKGMMSEAKKVYEGLE----QPNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHK 344

Query: 358 IPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           IPD  T K+L EGL++  +M++A+G+ R ++KKFPP  +  W+K+EE LGL S
Sbjct: 345 IPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKLGLYS 393

[Close]

BLAST of Carg05771-RA vs. TAIR10
Match: AT1G80150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-22
Identity = 60/191 (31.41%), Postives = 100/191 (52.36%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DP+K  N++ + +++    + +R+A E T+ RLA + R D IE L+E  K  P+  +E F
Sbjct: 50  DPEKLYNLFKANATN-RLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGF 109

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           +  +I  YG+AGM + A+ T+  M+ +G  RSV SFNA L   + +     + +      
Sbjct: 110 IVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAP 169

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      + I +KS+CE G  + A   +R ME++ +    VT+TT++ ALYK    
Sbjct: 170 SKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERC 229

Query: 238 EEAEKIWNKMI 249
                +WN M+
Sbjct: 230 VIGNGLWNLMV 239

[Close]

BLAST of Carg05771-RA vs. TAIR10
Match: AT3G13160.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 87.8 bits (216), Expect = 1.7e-17
Identity = 43/130 (33.08%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 84  ELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMED 143
           E T+RRLA +++F+ +E ++E     P +++E F++ +I  YGR GMFE+A + +++M +
Sbjct: 75  ERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPE 134

Query: 144 FGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXXXXXXXXXXYGILVKSYCESGSPE 203
               R+ +SFNALL A  +SK+FD V  +                Y  L+K  C  GS  
Sbjct: 135 RNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFT 194

Query: 204 KAMQIVRGME 214
           +A+ ++  +E
Sbjct: 195 EAVALIDEIE 204

[Close]

BLAST of Carg05771-RA vs. TAIR10
Match: AT1G55890.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-17
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 86  TIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMEDFG 145
           T+RRL  ++R   +E ++E  K    +++E F + +I  YG+AGMFE+A + + +M +  
Sbjct: 80  TVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRD 139

Query: 146 TPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXXXXXXXXXXYGILVKSYCESGSPEKA 205
             RSV+SFNALL A+  SK+FD V +L                Y  L+K+ CE  S  +A
Sbjct: 140 CKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEA 199

Query: 206 MQIVRGME 214
           + ++  +E
Sbjct: 200 VALLDEIE 207

[Close]

BLAST of Carg05771-RA vs. Swiss-Prot
Match: sp|Q9M065|PP352_ARATH (Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g36680 PE=1 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 5.2e-120
Identity = 220/353 (62.32%), Postives = 266/353 (75.35%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IY++VS H  SPVSSRYAQELT+RRLAK RRF DIE+LIESHKNDPKI +EPF
Sbjct: 45  DPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKIKEEPF 104

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQL-XXXX 177
            STLIRSYG+A MF HAMRT+ QM+ +GTPRS +SFNALL A  HSK FDKVPQL  XXX
Sbjct: 105 YSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQLFDXXX 164

Query: 178 XXXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGE 237
           X           YGIL+KSYC+SG+PEKA++I+R M+   +EVT + FTTIL +LYKKGE
Sbjct: 165 XRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGE 224

Query: 238 SEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYL 297
            E A+                AYNVR+M      PE V+ LIEEM++ G+KPDTISYNYL
Sbjct: 225 LEVADNXXXXXXXXXXXXXXAAYNVRIMSAQKESPERVKELIEEMSSMGLKPDTISYNYL 284

Query: 298 MTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHK 357
           MT YC+ GM+DEAKKVY+ +E N C  NAATFRT +++LC +  YE+GY +FK+SV +HK
Sbjct: 285 MTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVYMHK 344

Query: 358 IPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           IPD NT+K+LV GL+E KK  +AKGLIRT++KKFPP  L AW+K+EE LGL S
Sbjct: 345 IPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEEELGLYS 397

[Close]

BLAST of Carg05771-RA vs. Swiss-Prot
Match: sp|Q9ZU67|PP162_ARATH (Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g18520 PE=1 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 8.0e-113
Identity = 203/353 (57.51%), Postives = 262/353 (74.22%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IY SVS++ TSP+SSRYA ELT++RLAKS+RF DIE+LIESHKN+PKI  E F
Sbjct: 45  DPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNPKIKTETF 104

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQL-XXXX 177
           LSTLIRSYGRA MF+HAM+ + +M+  GTPR+V+SFNALL A  HS  F++VPQL     
Sbjct: 105 LSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERVPQLFDEFP 164

Query: 178 XXXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGE 237
                       YG+L+KSYC+SG PEKAM+I+R ME   VEVT + FTTIL +LYK G 
Sbjct: 165 QRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGL 224

Query: 238 SEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYL 297
            +EAE +W +M++KGC+LD   YNVRLM+     PE V+ L+EEM++ G+KPDT+SYNYL
Sbjct: 225 VDEAESLWIEMVNKGCDLDNTVYNVRLMNAAKESPERVKELMEEMSSVGLKPDTVSYNYL 284

Query: 298 MTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHK 357
           MT YC  GM+ EAKKVY+ +E      NAATFRT +++LC NG Y++G  VFK+S  VHK
Sbjct: 285 MTAYCVKGMMSEAKKVYEGLE----QPNAATFRTLIFHLCINGLYDQGLTVFKKSAIVHK 344

Query: 358 IPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           IPD  T K+L EGL++  +M++A+G+ R ++KKFPP  +  W+K+EE LGL S
Sbjct: 345 IPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFPPRLVTEWKKLEEKLGLYS 393

[Close]

BLAST of Carg05771-RA vs. Swiss-Prot
Match: sp|Q8GW57|PP134_ARATH (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-21
Identity = 60/191 (31.41%), Postives = 100/191 (52.36%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DP+K  N++ + +++    + +R+A E T+ RLA + R D IE L+E  K  P+  +E F
Sbjct: 50  DPEKLYNLFKANATN-RLVIENRFAFEDTVSRLAGAGRLDFIEDLLEHQKTLPQGRREGF 109

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           +  +I  YG+AGM + A+ T+  M+ +G  RSV SFNA L   + +     + +      
Sbjct: 110 IVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLSFNPDLHTIWEFLHDAP 169

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      + I +KS+CE G  + A   +R ME++ +    VT+TT++ ALYK    
Sbjct: 170 SKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDVVTYTTLISALYKHERC 229

Query: 238 EEAEKIWNKMI 249
                +WN M+
Sbjct: 230 VIGNGLWNLMV 239

[Close]

BLAST of Carg05771-RA vs. Swiss-Prot
Match: sp|Q9LK57|PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g13160 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-16
Identity = 43/130 (33.08%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 84  ELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMED 143
           E T+RRLA +++F+ +E ++E     P +++E F++ +I  YGR GMFE+A + +++M +
Sbjct: 75  ERTVRRLAAAKKFEWVEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPE 134

Query: 144 FGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXXXXXXXXXXYGILVKSYCESGSPE 203
               R+ +SFNALL A  +SK+FD V  +                Y  L+K  C  GS  
Sbjct: 135 RNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFT 194

Query: 204 KAMQIVRGME 214
           +A+ ++  +E
Sbjct: 195 EAVALIDEIE 204

[Close]

BLAST of Carg05771-RA vs. Swiss-Prot
Match: sp|Q9LG23|PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-16
Identity = 44/128 (34.38%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 86  TIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMEDFG 145
           T+RRL  ++R   +E ++E  K    +++E F + +I  YG+AGMFE+A + + +M +  
Sbjct: 80  TVRRLVAAKRLHYVEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRD 139

Query: 146 TPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXXXXXXXXXXYGILVKSYCESGSPEKA 205
             RSV+SFNALL A+  SK+FD V +L                Y  L+K+ CE  S  +A
Sbjct: 140 CKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEA 199

Query: 206 MQIVRGME 214
           + ++  +E
Sbjct: 200 VALLDEIE 207

[Close]

BLAST of Carg05771-RA vs. TrEMBL
Match: tr|A0A2I4F4B4|A0A2I4F4B4_9ROSI (pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Juglans regia OX=51240 GN=LOC108995377 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 2.5e-143
Identity = 251/352 (71.31%), Postives = 293/352 (83.24%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IYSSVS +Y+SP SSRYAQ+LT+RRLAKS RF DIESLIESHK DPKI +EP+
Sbjct: 36  DPDKALEIYSSVSKNYSSPTSSRYAQDLTVRRLAKSHRFSDIESLIESHKKDPKIKEEPY 95

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           LSTLIRSYGRAGMF+HA+RT++QM+D GTPRS +SFNALL A NHSK F+KVPQL     
Sbjct: 96  LSTLIRSYGRAGMFDHALRTFDQMDDLGTPRSAVSFNALLSACNHSKMFNKVPQLFEEIP 155

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      YGILVKSYCE+GSPE A+ I + MEE  VE+TAVTFTTIL ALYK G+S
Sbjct: 156 RKYNVSPDKVSYGILVKSYCEAGSPETAVGIFKEMEEKGVEITAVTFTTILGALYKNGKS 215

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
           EEAEK WN+M+ KGCE+DV AYNVR+M+ HGG+PE+V ALI EM+N+G+KPD ISYNYLM
Sbjct: 216 EEAEKYWNEMVKKGCEIDVAAYNVRIMYAHGGEPENVMALINEMSNAGLKPDAISYNYLM 275

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCY K+GM+DEAK VY+ +E NGCN NAATFRT +YYLCRN DYEKGY VFKESVKVHKI
Sbjct: 276 TCYLKSGMMDEAKAVYEGLEGNGCNPNAATFRTLIYYLCRNEDYEKGYKVFKESVKVHKI 335

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           PD  T++ LVEGL++KKKMK AKGLIRTI+KKFPP+ + AW KVE+ LGL+S
Sbjct: 336 PDFVTMRNLVEGLVKKKKMKAAKGLIRTIKKKFPPNVVNAWTKVEKELGLSS 387

[Close]

BLAST of Carg05771-RA vs. TrEMBL
Match: tr|A0A1S3BX19|A0A1S3BX19_CUCME (pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494372 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 7.9e-142
Identity = 259/352 (73.58%), Postives = 282/352 (80.11%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IYSSVSSHYTSPV+SRYAQE+TIRRLAKSRRF DIESLIESHKNDPKITQEPF
Sbjct: 50  DPDKALEIYSSVSSHYTSPVTSRYAQEITIRRLAKSRRFKDIESLIESHKNDPKITQEPF 109

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           LSTLIRSYGR GMFEHAMRTYNQM D GTPRS +SFNALL A NHSKQFDKVPQL     
Sbjct: 110 LSTLIRSYGRVGMFEHAMRTYNQMGDLGTPRSALSFNALLSACNHSKQFDKVPQLFDEMP 169

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      YGILVKSYC++GSPEKA+QI+R MEENDVEVTAVTFTTI++ALYKKGES
Sbjct: 170 KRYNFSPNKISYGILVKSYCDAGSPEKALQILREMEENDVEVTAVTFTTIINALYKKGES 229

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
            EAEKIW+KM+SKGCELDVGAYNVRLMHEHGGKPE V+A+IEEMANSG+KPD ISYNYLM
Sbjct: 230 AEAEKIWDKMMSKGCELDVGAYNVRLMHEHGGKPERVQAIIEEMANSGLKPDAISYNYLM 289

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCYCKNGMIDEAK                                       ESVK++KI
Sbjct: 290 TCYCKNGMIDEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVKMNKI 349

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLAS 410
           PD NT+KYLVEGL+EKK M+EAKGLIRT+RKKFPPD+LKAWR+VEE +GLAS
Sbjct: 350 PDFNTLKYLVEGLVEKKMMREAKGLIRTVRKKFPPDTLKAWREVEEGVGLAS 401

[Close]

BLAST of Carg05771-RA vs. TrEMBL
Match: tr|A0A251NBS6|A0A251NBS6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G151800 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 4.8e-139
Identity = 241/365 (66.03%), Postives = 292/365 (80.00%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKAL IYSSVS HY++P SSRYAQ+LT+RRLAKS RF DIE LIESHKNDPKITQEPF
Sbjct: 35  DPDKALEIYSSVSEHYSTPTSSRYAQDLTVRRLAKSHRFADIEKLIESHKNDPKITQEPF 94

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           L TLIRSYGR+GMF+HAMRT++QM+  GTPRS +SFNALL A  +SKQF+KVPQL     
Sbjct: 95  LCTLIRSYGRSGMFDHAMRTFDQMDQLGTPRSSLSFNALLTACTNSKQFEKVPQLFDEIP 154

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
                      YGIL+KSYC +  PEKA++ +R MEE  +E+TAVTFTTI +ALYKKG  
Sbjct: 155 NKHGVSPDKVSYGILIKSYCAADKPEKAIETLRLMEEKGIEITAVTFTTIFNALYKKGNG 214

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
           EEAE +WN+M+ KG E+D  AYNV++M+ HGG P++V+ALIEEMAN+G+KPDTISYNYLM
Sbjct: 215 EEAENLWNEMVKKGIEVDAAAYNVKIMYVHGGNPDNVKALIEEMANAGLKPDTISYNYLM 274

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCYC+N M++EA KVY+ +E N CN NAATFRT ++YLC + DY+K Y +FK SV+VHKI
Sbjct: 275 TCYCRNEMMEEAVKVYEGLEGNACNPNAATFRTLIFYLCSSEDYDKAYKIFKRSVEVHKI 334

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASXXXXXXXX 417
           PD NT+++LVEGL++KKKMKEAKGLIRTI+KKFPP+ L AW+KVEE LGLAS        
Sbjct: 335 PDFNTMRHLVEGLVKKKKMKEAKGLIRTIKKKFPPNLLVAWKKVEEGLGLASSDRNASSV 394

Query: 418 DDETE 423
            D  E
Sbjct: 395 PDNDE 399

[Close]

BLAST of Carg05771-RA vs. TrEMBL
Match: tr|A0A0A0KXX6|A0A0A0KXX6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038790 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.1e-138
Identity = 273/363 (75.21%), Postives = 295/363 (81.27%), Query Frame = 0


Query: 58  DPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPF 117
           DPDKA+ IYSSVSSHYTSPV+SRYAQE+TIRRLAK+RRF DIESLIESHKNDPKITQEPF
Sbjct: 79  DPDKAVEIYSSVSSHYTSPVTSRYAQEITIRRLAKARRFKDIESLIESHKNDPKITQEPF 138

Query: 118 LSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXX 177
           LSTLIRSYGR GMFEHAMRTYNQM D GTPRS +SFNALL A N+SKQFDKVPQLXXXXX
Sbjct: 139 LSTLIRSYGRVGMFEHAMRTYNQMGDLGTPRSALSFNALLTACNNSKQFDKVPQLXXXXX 198

Query: 178 XXXXXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGES 237
           XXXXXXXXXXXYGILVKSYC++GSPEKAM+IVR MEEN VEV AVTFTTIL+ALYKKG+S
Sbjct: 199 XXXXXXXXXXXYGILVKSYCDAGSPEKAMEIVREMEENGVEVNAVTFTTILNALYKKGDS 258

Query: 238 EEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLM 297
            EAEKIW  MISKGCELDVGAYNVRLMHEHGGKPEHV+ALIEEMANSG+KPD ISYNYLM
Sbjct: 259 AEAEKIWETMISKGCELDVGAYNVRLMHEHGGKPEHVQALIEEMANSGLKPDAISYNYLM 318

Query: 298 TCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKI 357
           TCYCKNGM DEA                                         SVK++KI
Sbjct: 319 TCYCKNGMFDEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVKMNKI 378

Query: 358 PDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASXXXXXXXX 417
           PD NT+KYLVEGL+EKK M+EAKGLIRTIRKKFPPD+LKAWR+VEE +GLAS        
Sbjct: 379 PDFNTLKYLVEGLVEKKMMREAKGLIRTIRKKFPPDTLKAWREVEEGVGLASAGDDVSSK 438

Query: 418 DDE 421
           DD+
Sbjct: 439 DDD 441

[Close]

BLAST of Carg05771-RA vs. TrEMBL
Match: tr|K4BB76|K4BB76_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.8e-130
Identity = 225/348 (64.66%), Postives = 281/348 (80.75%), Query Frame = 0


Query: 61  KALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLST 120
           KAL IYSSVS  Y SP+SSRYAQE T++RLAKS RF DIE+ +ESHKN PKITQEPFLS+
Sbjct: 48  KALEIYSSVSDRYVSPLSSRYAQEFTVKRLAKSHRFSDIENFLESHKNSPKITQEPFLSS 107

Query: 121 LIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLXXXXXXXX 180
           +IRSYG AGMF+HA++ Y+QM+D GTPRS ISFN LL A   SK +D+VPQL        
Sbjct: 108 IIRSYGVAGMFDHALKIYHQMDDLGTPRSAISFNVLLSACVRSKLYDRVPQLFDEIPVKY 167

Query: 181 XXXXXXXXYGILVKSYCESGSPEKAMQIVRGMEENDVEVTAVTFTTILDALYKKGESEEA 240
                   YGIL++SYCE+GSPE AM+I++ MEE  VE+T VTFTTIL + YKKG+S+EA
Sbjct: 168 GFLPDKVSYGILIRSYCETGSPEMAMEILKVMEEKSVEITTVTFTTILHSFYKKGKSDEA 227

Query: 241 EKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCY 300
           EK+WN+M+++GC  DVGAYNV++M+  GG  E V+ALIEEM ++G+KPDTISYNYLMTCY
Sbjct: 228 EKVWNEMVNRGCGPDVGAYNVKIMNIQGGDLEGVKALIEEMNDAGLKPDTISYNYLMTCY 287

Query: 301 CKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDV 360
           CKN ++DEA+ VYDD+E NGCN NAATFRT ++YLC+ G YE GY VFKESVKV KIPD 
Sbjct: 288 CKNELMDEAQMVYDDLEKNGCNPNAATFRTLIFYLCKKGRYETGYKVFKESVKVQKIPDF 347

Query: 361 NTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLA 409
           +T+ YLVEGL++K K+K+AKG+ RT++KKFPP+ +KAW K+E+ LGLA
Sbjct: 348 DTLTYLVEGLVKKSKLKDAKGMSRTVKKKFPPNLVKAWTKLEKELGLA 395

The following BLAST results are available for this feature:

BLAST of Carg05771-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985077.1	3.0e-193	97.64	pentatricopeptide repeat-containing protein At4g36680, mitochondrial-like [Cucur...	[more]
XP_022929280.1	1.4e-190	97.31	scarecrow-like protein 4 [Cucurbita moschata]	[more]
XP_023553152.1	4.1e-190	97.30	pentatricopeptide repeat-containing protein At4g36680, mitochondrial-like [Cucur...	[more]
XP_018826496.1	3.7e-143	71.31	PREDICTED: pentatricopeptide repeat-containing protein At4g36680, mitochondrial ...	[more]
XP_008453729.1	1.2e-141	73.58	PREDICTED: pentatricopeptide repeat-containing protein At4g36680, mitochondrial ...	[more]

BLAST of Carg05771-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36680.1	2.9e-121	62.32	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G18520.1	4.4e-114	57.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80150.1	1.4e-22	31.41	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G13160.1	1.7e-17	33.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G55890.1	3.9e-17	34.38	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg05771-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M065\|PP352_ARATH	5.2e-120	62.32	Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidop...	[more]
sp\|Q9ZU67\|PP162_ARATH	8.0e-113	57.51	Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidop...	[more]
sp\|Q8GW57\|PP134_ARATH	2.5e-21	31.41	Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidop...	[more]
sp\|Q9LK57\|PP226_ARATH	3.1e-16	33.08	Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidop...	[more]
sp\|Q9LG23\|PPR82_ARATH	6.9e-16	34.38	Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop...	[more]

BLAST of Carg05771-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4F4B4\|A0A2I4F4B4_9ROSI	2.5e-143	71.31	pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Juglans ...	[more]
tr\|A0A1S3BX19\|A0A1S3BX19_CUCME	7.9e-142	73.58	pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Cucumis ...	[more]
tr\|A0A251NBS6\|A0A251NBS6_PRUPE	4.8e-139	66.03	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G151800 PE=4 SV=1	[more]
tr\|A0A0A0KXX6\|A0A0A0KXX6_CUCSA	1.1e-138	75.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G038790 PE=4 SV=1	[more]
tr\|K4BB76\|K4BB76_SOLLC	1.8e-130	64.66	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05771	Carg05771	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05771-RA.exon.1	Carg05771-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05771-RA.CDS.1	Carg05771-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05771-RA	Carg05771-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 288..336 e-value: 6.4E-12 score: 45.4 coord: 221..261 e-value: 1.5E-9 score: 37.7 coord: 149..197 e-value: 5.5E-8 score: 32.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 327..353 e-value: 5.5E-4 score: 17.9 coord: 151..185 e-value: 2.0E-4 score: 19.3 coord: 291..323 e-value: 3.7E-10 score: 37.3 coord: 222..256 e-value: 1.2E-8 score: 32.5 coord: 119..146 e-value: 1.3E-6 score: 26.2 coord: 187..220 e-value: 1.3E-6 score: 26.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 119..145 e-value: 4.8E-5 score: 23.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 114..148 score: 8.955
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 149..179 score: 7.607
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 289..323 score: 12.693
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 359..389 score: 6.095
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 185..219 score: 10.676
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 220..254 score: 11.312
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 324..358 score: 8.396
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 51..262 e-value: 5.3E-34 score: 120.0 coord: 263..422 e-value: 1.5E-27 score: 98.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 156..353
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 289..393
None	No IPR available	PANTHER	PTHR24015:SF506	SUBFAMILY NOT NAMED	coord: 24..383
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 24..383