Carg05266-RA (mRNA) Silver-seed gourd

Overview
NameCarg05266-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionShikimate kinase
LocationCucurbita_argyrosperma_scaffold_010 : 794282 .. 799130 (-)
Sequence length1741
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTTGTTTGAATTTCTGGCGGAGCCGGAGCGACAACAGTTATAGCGCGCACCAAATTCGATACTCGTGCCGGTGATCTTGAAACCTCTCTTCCAGAACCACATGTGCATAGAAATTTGTCACCGCTTGCCCTTCTTTTGGCTTTGATTCTCACATTCTTCATCCTGTTTTGCTTGCCTTTTTGTGATTGTGGTGTGCTACGCGCCTTTCACTGAATTTGTGCTCTCATTTGTTTTCAAATAATTTCACGGCATCCGATCTTTTTTACTGGTTTGGAGTTGCAAAATTTTTTGAGTTTGATCGTTGAAGCTCTACTCTGTCTGTAAGTTTCGTTCCTTCTGAAAGAGTTTGAACCGTTTTCCTGGTTGTTTTTCGAGCTTTCTTACGACTTGATGTTTCTGTAATGCAACTTGGCGTTGATTTGAATTTTTATATTTTGTTTCTGATAATAATTATTTTAAGTTTTTTATTCACTTTCACTCTTAAATCTAATTCTCTTGAGTGATTAATGTTCAATTGAAACTTTAGGTCGTGTGTGGTTATCTAATCCAGTTAGCTGAGAAACTGAGGGAATTTTGGCAGCGACTATGGAGGTCAACGTAGGACATCTGCAGAATTTATCAATCCGGATTGATTCCGGAATGTTTGTGAGGAAACCGAGTGGTTCGGTCCGATTCCTTCTCCCAATTTCTAAACAGCAGAAGCTGCCACCGGTGGTTTCCGCTTTTCAGCAACCTTTGAGACTTTCTAATCGATGCAGGACGATCTCTGTTGGGGCCTCCTGCTATCGTGAGAATATTTCAGGTAATACAAGTCATTGAACTTCCACCGTGATTATAAATGTGCGTTTCTCTTTGTCATTTTTCCTCGTTTCTTTCTTTCGTTAATTCCTTTAAATATTGTCTGAGTTATATTCTCATTTACTATTATTGACTTGGTGATCGGCACTGAATCTATAATATATGCTTCTATTGTTTTTCATGGCTGAGCTTGATTTGTAGTCAGAACTTCAAATCTAATATTTGGATTTTGTTTTCTTGTTTCCTTACGAGAAGGTACAGTTATTTGGATTCTAAAAAGAGTTTTTGGTAAATTCCTCTGCGTCCATTTTCTGTCCTAATTTAATTTTGCATTTCTATTAATAATAAAACATTATGAAAAGCATGAACTACACAGTATAAAAGCAGTCTTATGCTACGTCTACGGCCAAATGATTTGTAGAGTTGTTCTGTTGATTTCAACGGAACCTTTTGGATTCTGAAAACCTCAACATCTTGTTTTGGCCAATGAATTAAGAACTACCTTTTATTCTAAGTAAACAAAAGGAACAAGAATAAAAGAAAATGTTACTCATTTCAAAGAAATGAAAATTGCTGTAGTGATTTTTTAGGTGATTAAATGGATAATGTATAAAATGGTCTCACACTTGGCGTATAAAATCCTTGAAAAATGCATCTCAGCAATTGATCCTCCCTGTTATTATAACCGGTCTCTCAGTGAGTAATTTCTTTATTTAGATGTTCTTCTGTCAGACTTTCGAGCATCTGAACCCTTCAAATCTTTGAAGGAGAAGTACTACGCAGAATAGATCCACATTTTTTAACATCATCTTGTAGATATTTTCCATTAGTGACTTTGTTGTCATTAGAAAGACATGCCTTTTATTTTGTTATTTCATTGTTGTCATGAATGATGAATAATCTGTATCGTATTGTCTTCCTCTTGCTTGTCTACAGCAAGCAAGGAAGGTAACCAATTGATTTTGACTTGTTGCTTTCCAATATTCCTTTTGTAGGTTTGGCGTTGGAAACTGAAAATTTTCATCCTTTTGACAAAGATCTACTTTTAAAGGTCAAGCAGAATTCTTGTTTGTTATATTTACTTAAATCTCAAGTAGAGCTGGGGTGACGTGGGATATGTGCTTTTTCTTTCTGATTCATCGAATATACTATTCTCCCCTTCCTTAAATAGCTTTTGGACGATAATTGGTGCAATTTGAACCTTCAAATGTGCAACTCTTAAAGTTTATCTAACTAGAATTTGGAAATATTGCAGAATAAGTCACAAGAGGTCCAGCCCCATCTAAATGGAAAATGCATATATCTAGTCGGTTAGTGTCTTTTCTTATTTACACTTTGTAATTGGCAATTCTTCTGCTTGGATACTAAATCTATCAAAGTGCTCATTTGCAGGAATGATGGGCAGTGGAAAGACAACCATAGGCAAGATTTTAGCAAAAGAATTGCGTTACGCATTTTCTGACAGGTTGTTATTTAATTGCTAACTAGCAAAGTACTTGTACTCCGGTTTGAAGTTTAATAAACAAGGAAAGAATGATTATATTGGAAGAAAAATTATTGCCCAATTTCCTCACTGTCACATCATTTTTCCCGCATCCAAGGTCTACTATGAAGCTGAACTGGGCTGGAAGAACAGTACTAAAGTGATATTGAGGACTATTGTAGTCGAATGAATTTAGTGAAGAGTTGCAGCTCCTGATGCAATAAATTGGATTTGCATTAACATCCAATATATGAATTTTTACTATTCTTTCTGATAGAAAATTATGGCATTTATAATTTGCCTCCATCTTGAGCACACATATGTTATTGGAAGTTTCTTGTGAGTGATTTTCTTTCATATTAATTATGCATTGCATATCTGGATGCTCCAGTGATACATTGGTGGAGCAAGAAGTTGGTGGAACTTCAGTGGCTGAAATTTTTAAGCTTTATGGCGAGGAATTTTTCAGAGACAAGGAGGTTAGTGATGATGGATGCCATTTGACTATCCTTTCCATCTGTGAAGTAGGTGGTTATTACTCTCTACTGTATTTGAGGTTTTTTTGAAATGAATGTAATGTGGGAAGTACAGTGCTTTGTAGATAATTTTCATTGAAATGAGCATATTTTAAATTCTTAAGATGCTAGAAGAGGAAAATGTCTGCATGTGATTTCCCTGCTTCCTTTTTTATAGGAATGGGAAGGAATCTGGATTTCTTAGTAATAGTGGGGTTTAGGAATGTCCAAAAGCCTGATGAATTTTTCAGTTAGGTTGAGTTAAAAACTTGTGTAGATTGGTTTGACTACACATAGGTTGAACCTCTGGGGGTAGTTAATAAGTATCAAACTTAGTAGTTTGGATTGAACCAAATGAAAGAAAATTGTTTTTCGTATAATAAGGTAAAATAATATAATGAACAACTATTTATAATTTAAGGCATGGAAATAGAGTTAAAGATCTTAATTACTTTTCTTCAAAGATTAACGATCAATGATTTGAATGGTCTCAACCAACCCATATAACATGGTTAGGCTCGGTTGAGTTTTGTCCATTACTTAATTCGAGGTTATTTAGGCTGGACAAATTTTACCTGAGCTTTTGTATTGGGTGAAAAATATCTTTGAATTAAGCTCCTGAACCCACCCCACTGACACCCCTCCCTATTAATTAATTTATTTAAAGTTTGATTGTTGATTTGCTGAACTAGTCGTGGAACTATCAATCATCGATGGATGATATTTTGACAAAGTTTTGAAAACTATGCCGTTTTCTCAAATAGGATGGTTATCAGCCATTCTTGCTACCATCCCCTAGTAACTTCTGCTATATCTTTTTCCTCTCGTCTAGCTGCTATGCTTTCAAGCAGCTAAGAAAATGTTTTGCAACTCTGAGCTATTATGGCAGATCCAAATTAGTGACAGTGATTTTCCTGTTAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTGATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGTTAGTAGTTCGGACACGTGACGATTTCTAGTTGTTATGTTGGTTGTCTGTTGTTGATTAGTGAGAGTCATCCTATTCGATTGTAGGAAATATATGCAGAACGGGATTAGCATCTGGCTAGACGTGCCATTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTAGGTACCGACTCACGCCCCCTCTTGCATAATGAGTCGGGCAATGGCTACACAAAGGTCCAATCATCCAGTCAATGTTTTTACTTATTTAGTTGTGATGCTTGATCCTAATACATCTTTTAATCTTCTGATTCTCACTCAGGCTTTCAGACGACTCTCAGTTCTTCTGGAGGAGAGGGGTGATGCATATACCAACGCCAATGTCAAAGTTTGTTTAGGAAGTATGAATGAAATAAGAACATCATATTCCTCTGTCTGTCTAGAAAAAAAGAGAGTAGTAGAAAGCTAATAACATGATTTTCTGTTCAATTCATTCTCAAGTTACAATGAACGTTTGTTATTTCTATATCTTCTTCTGTTTAAGCACAGGTTTTTGTTAACATTGCAGGTCTAGCAGCCAAACTGGGTTTGTCAGATGTATGTAATCTGACCCCTGAAGATATTGCTATAGAGGTCCCTCTCCTTCTGCCTCCTCATTTATCTTTGTTCCTGTTATGCATGATGATTAAACAAACTATCCAATTTGTTTTGAATTAAAGTATTTTTCCTCCTTCGCAGGCGCTTGTACAAATCCAGCACTTTGTGGAGCAGGAAGATGGTTATTGTACAAGTTAAGACTACTGCAGATCATCATCCGGTGTTTAAAGCCTCCTCTCTTCTTAAAGAAGCACGGAATGGCATTGCTTCTACTCTTGCCAATTGTATAACATGGGATCATCAGGTATGAATAACCACCTGGAATGGAACGTCGTCAGTGTTAGAAGTGTATCTATCAAAATTTTGAGACAAATAAAATCTTCTTTTCTTCTTAATTTCTGGGATACTGTATGATATTTATTATATAGTCCATTGCATTTGAAATAAAAAGGCAACTTTTCAAGTT

mRNA sequence

ATGGCGGTTTGTTTGAATTTCTGGCGGAGCCGGAGCGACAACAGTTATAGCGCGCACCAAATTCGATACTCGTGCCGGTGATCTTGAAACCTCTCTTCCAGAACCACATGTGCATAGAAATTTGTCACCGCTTGCCCTTCTTTTGGCTTTGATTCTCACATTCTTCATCCTGTTTTGCTTGCCTTTTTGTGATTGTGGTGTGCTACGCGCCTTTCACTGAATTTGTGCTCTCATTTGTTTTCAAATAATTTCACGGCATCCGATCTTTTTTACTGGTTTGGAGTTGCAAAATTTTTTGAGTTTGATCGTTGAAGCTCTACTCTGTCTGTAAGTTTCGTTCCTTCTGAAAGAGTTTGAACCGTTTTCCTGGTTGTTTTTCGAGCTTTCTTACGACTTGATGTTTCTGTAATGCAACTTGGCGTTGATTTGAATTTTTATATTTTGTTTCTGATAATAATTATTTTAAGTTTTTTATTCACTTTCACTCTTAAATCTAATTCTCTTGAGTGATTAATGTTCAATTGAAACTTTAGGTCGTGTGTGGTTATCTAATCCAGTTAGCTGAGAAACTGAGGGAATTTTGGCAGCGACTATGGAGGTCAACGTAGGACATCTGCAGAATTTATCAATCCGGATTGATTCCGGAATGTTTGTGAGGAAACCGAGTGGTTCGGTCCGATTCCTTCTCCCAATTTCTAAACAGCAGAAGCTGCCACCGGTGGTTTCCGCTTTTCAGCAACCTTTGAGACTTTCTAATCGATGCAGGACGATCTCTGTTGGGGCCTCCTGCTATCGTGAGAATATTTCAGGTTTGGCGTTGGAAACTGAAAATTTTCATCCTTTTGACAAAGATCTACTTTTAAAGAATAAGTCACAAGAGGTCCAGCCCCATCTAAATGGAAAATGCATATATCTAGTCGGAATGATGGGCAGTGGAAAGACAACCATAGGCAAGATTTTAGCAAAAGAATTGCGTTACGCATTTTCTGACAGTGATACATTGGTGGAGCAAGAAGTTGGTGGAACTTCAGTGGCTGAAATTTTTAAGCTTTATGGCGAGGAATTTTTCAGAGACAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTGATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAACGGGATTAGCATCTGGCTAGACGTGCCATTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTAGGTACCGACTCACGCCCCCTCTTGCATAATGAGTCGGGCAATGGCTACACAAAGGTTTTTGTTAACATTGCAGGTCTAGCAGCCAAACTGGGTTTGTCAGATGTATGTAATCTGACCCCTGAAGATATTGCTATAGAGGTCCCTCTCCTTCTGCCTCCTCATTTATCTTTGTTCCTGCGCTTGTACAAATCCAGCACTTTGTGGAGCAGGAAGATGGTTATTGTACAAGTTAAGACTACTGCAGATCATCATCCGGTGTTTAAAGCCTCCTCTCTTCTTAAAGAAGCACGGAATGGCATTGCTTCTACTCTTGCCAATTGTATAACATGGGATCATCAGGTATGAATAACCACCTGGAATGGAACGTCGTCAGTGTTAGAAGTGTATCTATCAAAATTTTGAGACAAATAAAATCTTCTTTTCTTCTTAATTTCTGGGATACTGTATGATATTTATTATATAGTCCATTGCATTTGAAATAAAAAGGCAACTTTTCAAGTT

Coding sequence (CDS)

ATGGAGGTCAACGTAGGACATCTGCAGAATTTATCAATCCGGATTGATTCCGGAATGTTTGTGAGGAAACCGAGTGGTTCGGTCCGATTCCTTCTCCCAATTTCTAAACAGCAGAAGCTGCCACCGGTGGTTTCCGCTTTTCAGCAACCTTTGAGACTTTCTAATCGATGCAGGACGATCTCTGTTGGGGCCTCCTGCTATCGTGAGAATATTTCAGGTTTGGCGTTGGAAACTGAAAATTTTCATCCTTTTGACAAAGATCTACTTTTAAAGAATAAGTCACAAGAGGTCCAGCCCCATCTAAATGGAAAATGCATATATCTAGTCGGAATGATGGGCAGTGGAAAGACAACCATAGGCAAGATTTTAGCAAAAGAATTGCGTTACGCATTTTCTGACAGTGATACATTGGTGGAGCAAGAAGTTGGTGGAACTTCAGTGGCTGAAATTTTTAAGCTTTATGGCGAGGAATTTTTCAGAGACAAGGAGACTGAGGTATTGAGAAAACTATCATCGATGCACGGGTTTGTGATTTCCACTGGTGGAGGTATTGTTGTTCGGCCTATTAACTGGAAATATATGCAGAACGGGATTAGCATCTGGCTAGACGTGCCATTGGAAGCCTTGGCAAAAAGAATTGCTGCAGTAGGTACCGACTCACGCCCCCTCTTGCATAATGAGTCGGGCAATGGCTACACAAAGGTTTTTGTTAACATTGCAGGTCTAGCAGCCAAACTGGGTTTGTCAGATGTATGTAATCTGACCCCTGAAGATATTGCTATAGAGGTCCCTCTCCTTCTGCCTCCTCATTTATCTTTGTTCCTGCGCTTGTACAAATCCAGCACTTTGTGGAGCAGGAAGATGGTTATTGTACAAGTTAAGACTACTGCAGATCATCATCCGGTGTTTAAAGCCTCCTCTCTTCTTAAAGAAGCACGGAATGGCATTGCTTCTACTCTTGCCAATTGTATAACATGGGATCATCAGGTATGA

Protein sequence

MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTISVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVFVNIAGLAAKLGLSDVCNLTPEDIAIEVPLLLPPHLSLFLRLYKSSTLWSRKMVIVQVKTTADHHPVFKASSLLKEARNGIASTLANCITWDHQV
Homology
[Close]
BLAST of Carg05266-RA vs. NCBI nr
Match: XP_022963330.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963332.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963333.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 496.9 bits (1278), Expect = 5.3e-137
Identity = 253/282 (89.72%), Postives = 255/282 (90.43%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           MEVNVGHLQNLSIRIDSGMF RKPSGSVRFL PISKQQKLPPVVSAFQQPLRLSNRCRTI
Sbjct: 1   MEVNVGHLQNLSIRIDSGMFARKPSGSVRFLPPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YAFSDSDTLVEQEVGGTSVAEIFKLYGE+FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTK F    
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LAAKLGLSDVCNLTPEDIAIE
Sbjct: 241 VLLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPEDIAIE 282

[Close]
BLAST of Carg05266-RA vs. NCBI nr
Match: XP_023518721.1 (shikimate kinase 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023518723.1 shikimate kinase 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023518724.1 shikimate kinase 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023518725.1 shikimate kinase 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.9 bits (1278), Expect = 5.3e-137
Identity = 252/282 (89.36%), Postives = 256/282 (90.78%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           MEVNVGHLQNLSIRIDSGMF+RKPSGSVRFLLPIS+QQKLPPVVSAFQQPLRLSNRCRTI
Sbjct: 1   MEVNVGHLQNLSIRIDSGMFLRKPSGSVRFLLPISEQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           S GASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG
Sbjct: 61  SAGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YAFSDSDTLVEQEVGGTSVAEIFKLYGE+FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTK F    
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFKRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LAAKLGLSDVCNLTPEDIAIE
Sbjct: 241 ILLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPEDIAIE 282

[Close]
BLAST of Carg05266-RA vs. NCBI nr
Match: XP_023004078.1 (shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023004079.1 shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023004080.1 shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 495.7 bits (1275), Expect = 1.2e-136
Identity = 252/282 (89.36%), Postives = 255/282 (90.43%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           M VNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI
Sbjct: 1   MTVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG
Sbjct: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL YAFSDSDTLVEQEVGGTSVAEIFKLYGE+FFRDKETEVLRKLSSMHGFVIST
Sbjct: 121 KILAKELSYAFSDSDTLVEQEVGGTSVAEIFKLYGEDFFRDKETEVLRKLSSMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTK F    
Sbjct: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LAAKLGLSDVCNLTP DIA+E
Sbjct: 241 ILLEERGDAYTNANVKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]
BLAST of Carg05266-RA vs. NCBI nr
Match: XP_022950653.1 (shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shikimate kinase 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 451.4 bits (1160), Expect = 2.6e-123
Identity = 230/282 (81.56%), Postives = 239/282 (84.75%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           ME N+GHLQ LSIRIDSGMFV KPSGSVRFL PIS Q K  P+VSAFQQPLRL NRCRT+
Sbjct: 1   MEANLGHLQYLSIRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           S GASCYRENISGL LETENFHPFD+DLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDEDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH+ESGN YTK F    
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LAAKLGLSDVCNLTP DIA+E
Sbjct: 241 ILQEXXXXXXXXANAKVCLGSLAAKLGLSDVCNLTPADIALE 282

[Close]
BLAST of Carg05266-RA vs. NCBI nr
Match: XP_022977943.1 (shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikimate kinase 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 3.3e-123
Identity = 229/282 (81.21%), Postives = 238/282 (84.40%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           ME N+GHLQ LS+RIDSGMFV KPSGSVRFL PIS Q K  P+VSAFQQPLRL NRCRT+
Sbjct: 1   MEANLGHLQYLSVRIDSGMFVTKPSGSVRFLQPISDQHKPLPLVSAFQQPLRLPNRCRTV 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           S GASCYRENISGL LETENFHPFDKDLLLKNKS EVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SFGASCYRENISGLTLETENFHPFDKDLLLKNKSHEVQPHLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVAEIFKL+GE FFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELSYTFSDSDTLVEQEVGGTSVAEIFKLHGEGFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYMQ GISIWLDVPLEALAKRIAAVGTDSRPLLH+ESGN YTK F    
Sbjct: 181 GGGIVVRPINWKYMQKGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LAAKLG SDVCNLTP DIA+E
Sbjct: 241 ILQEXXXXXXXXANAKVCLGSLAAKLGFSDVCNLTPADIALE 282

[Close]
BLAST of Carg05266-RA vs. TAIR10
Match: AT2G21940.4 (shikimate kinase 1)

HSP 1 Score: 262.7 bits (670), Expect = 3.1e-70
Identity = 136/257 (52.92%), Postives = 177/257 (68.87%), Query Frame = 0 

Query: 26  GSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTISVGASCYRENISGLALETENFHPFD 85
           GS+R+   +   ++   +  A  QP R +++ R +S   SC   N SG  LET + +PFD
Sbjct: 27  GSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSGALLETGSVYPFD 86

Query: 86  KDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVEQEVGGT 145
           +D +LK K++EV+P+LNG+ +YLVGMMGSGKTT+GK+++K L Y F D DTL+EQ + GT
Sbjct: 87  ED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT 146

Query: 146 SVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGISIWLDVP 205
           SVAEIF  +GE FFR KET+ L+KLSS +  V+STGGG V+RPINWKYM  GISIWLDVP
Sbjct: 147 SVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVP 206

Query: 206 LEALAKRIAAVGTDSRPLLHNESGNGYTKVF--------------------VNIAGLAAK 263
           LEALA RIAAVGTDSRPLLH+ESG+ Y+  F                    V++  +AAK
Sbjct: 207 LEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWXXXXXXXXXXXARVSLENIAAK 266

[Close]
BLAST of Carg05266-RA vs. TAIR10
Match: AT4G39540.3 (shikimate kinase 2)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-58
Identity = 136/276 (49.28%), Postives = 172/276 (62.32%), Query Frame = 0 

Query: 20  FVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTISVGASCYRENISGLALETE 79
           F  KP GS+R+     K+ K   VV A     R  +R R++S       +  S   LET 
Sbjct: 20  FEGKPRGSLRYNTQRIKEDKRFRVV-ALTLDKRRDHRLRSVS-------DKNSSALLETG 79

Query: 80  NF--HPFDKD-LLLKNKSQEVQPHLNGKCIYL--------VGMMGSGKTTIGKILAKELR 139
           +    PFD++  +LK K++EV+P+LNG+ +YL        +GMMGSGKTT+GKI+A+ L 
Sbjct: 80  SLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLLNSFLVNALGMMGSGKTTVGKIMARSLG 139

Query: 140 YAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSM-HGFVISTGGGIVVR 199
           Y F D DTL+EQ + GTSVAEIF+ +GE  FR+KETE L+KLS M H  V+STGGG V+R
Sbjct: 140 YTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIR 199

Query: 200 PINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLH-NESGNGYTKVF---------- 259
           PINWKYM  GISIWLDVPLEALA RIAAVGT SRPLLH +ESG+ YT             
Sbjct: 200 PINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDAR 259

Query: 260 ----------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                     V++  +  KLG   V +LTP +IAIE
Sbjct: 260 GEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIE 287

[Close]
BLAST of Carg05266-RA vs. TAIR10
Match: AT3G26900.1 (shikimate kinase like 1)

HSP 1 Score: 122.9 bits (307), Expect = 3.8e-28
Identity = 83/254 (32.68%), Postives = 129/254 (50.79%), Query Frame = 0 

Query: 25  SGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTIS-----VGASCYRENISGLALETE 84
           +G V  LLP+      P   +   +PL  S+  R IS       +    +  +   +   
Sbjct: 13  TGFVPRLLPLLS----PQARTTLCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGISVV 72

Query: 85  NFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVE 144
           +  P D   ++K K+ ++ P L G  I+LVG+  S KT  GK+LA+ LRY + DSD L+ 
Sbjct: 73  DSDPID---VVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLIT 132

Query: 145 QEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGIS 204
           +  GG   A+  K   E+ F++ ETEVL++LSSM   V+  G G V    N   +++GIS
Sbjct: 133 EAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLRNLALLRHGIS 192

Query: 205 IWLDVPLEALAK--------RIAAVGTDSRPLLHNESGNGY--TKVFVNIAGLAAKLGLS 264
           IW+DVPL+  AK          +    D+    + +S  GY    V +++  +A KL   
Sbjct: 193 IWIDVPLDITAKGDDDSFHSEPSPELFDTLKASYEKSRKGYETADVSISLEKIATKLEFE 252

[Close]
BLAST of Carg05266-RA vs. Swiss-Prot
Match: sp|Q9SJ05|SK1_ARATH (Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV=2)

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-67
Identity = 136/257 (52.92%), Postives = 177/257 (68.87%), Query Frame = 0 

Query: 26  GSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTISVGASCYRENISGLALETENFHPFD 85
           GS+R+   +   ++   +  A  QP R +++ R +S   SC   N S L LET + +PFD
Sbjct: 27  GSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSSAL-LETGSVYPFD 86

Query: 86  KDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVEQEVGGT 145
           +D +LK K++EV+P+LNG+ +YLVGMMGSGKTT+GK+++K L Y F D DTL+EQ + GT
Sbjct: 87  ED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT 146

Query: 146 SVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGISIWLDVP 205
           SVAEIF  +GE FFR KET+ L+KLSS +  V+STGGG V+RPINWKYM  GISIWLDVP
Sbjct: 147 SVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVP 206

Query: 206 LEALAKRIAAVGTDSRPLLHNESGNGYTKVF--------------------VNIAGLAAK 263
           LEALA RIAAVGTDSRPLLH+ESG+ Y+  F                    V++  +AAK
Sbjct: 207 LEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWXXXXXXXXXXXARVSLENIAAK 266

[Close]
BLAST of Carg05266-RA vs. Swiss-Prot
Match: sp|Q00497|SK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 5.2e-67
Identity = 143/300 (47.67%), Postives = 187/300 (62.33%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           ME  V     LS  I+S   VRKPSG +RF    +++ +   VVS   QP + ++  R +
Sbjct: 1   MEARVSQSLQLSSWINSDKVVRKPSGLLRFSEKWNEKPRHRVVVSCHLQPRKAAHSDRRV 60

Query: 61  SVGASCYRENISGLALETENFH-PFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTI 120
            +  SC  +N+    LE+  F    D+   LKNK++EV+ +L+G+C+YLVGMMG GKTT+
Sbjct: 61  QLKVSCSPQNVQASVLESGCFSASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTV 120

Query: 121 GKILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIS 180
           G+ILA+ L Y+F D D L+EQ VGG +VAEIF+L GE FFRD ETEVL KLS MH  V+S
Sbjct: 121 GRILAETLGYSFFDCDRLIEQAVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVS 180

Query: 181 TGGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF--- 240
           TGGG VVRPINW++M  GIS+WLDVPLEALAKRI   GT SRPLLH ESG+ Y       
Sbjct: 181 TGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRL 240

Query: 241 --------VNIAGLAAKLGL--------SDVCNLTPEDIAIEVPLLLPPHLSLFLRLYKS 281
                    N A  +A++ L         DVC++TP +I +EV +     +  FL+  KS
Sbjct: 241 TTLMETRGENYANASARVSLENIALKREKDVCHITPAEITLEVLI----QIENFLKTQKS 296

[Close]
BLAST of Carg05266-RA vs. Swiss-Prot
Match: sp|Q8GY88|SK2_ARATH (Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 6.1e-60
Identity = 137/268 (51.12%), Postives = 172/268 (64.18%), Query Frame = 0 

Query: 20  FVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTISVGASCYRENISGLALETE 79
           F  KP GS+R+     K+ K   VV A     R  +R R++S       +  S   LET 
Sbjct: 20  FEGKPRGSLRYNTQRIKEDKRFRVV-ALTLDKRRDHRLRSVS-------DKNSSALLETG 79

Query: 80  NF--HPFDKD-LLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDT 139
           +    PFD++  +LK K++EV+P+LNG+ +YLVGMMGSGKTT+GKI+A+ L Y F D DT
Sbjct: 80  SLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 139

Query: 140 LVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSM-HGFVISTGGGIVVRPINWKYMQ 199
           L+EQ + GTSVAEIF+ +GE  FR+KETE L+KLS M H  V+STGGG V+RPINWKYM 
Sbjct: 140 LIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMH 199

Query: 200 NGISIWLDVPLEALAKRIAAVGTDSRPLLH-NESGNGYTKVF------------------ 259
            GISIWLDVPLEALA RIAAVGT SRPLLH +ESG+ YT                     
Sbjct: 200 KGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKAS 259

Query: 260 --VNIAGLAAKLGLSDVCNLTPEDIAIE 263
             V++  +  KLG   V +LTP +IAIE
Sbjct: 260 ARVSLENITLKLGYRSVSDLTPAEIAIE 279

[Close]
BLAST of Carg05266-RA vs. Swiss-Prot
Match: sp|Q7X7H9|SK3_ORYSJ (Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK3 PE=1 SV=2)

HSP 1 Score: 232.6 bits (592), Expect = 6.1e-60
Identity = 129/251 (51.39%), Postives = 168/251 (66.93%), Query Frame = 0 

Query: 44  VSAFQQPLRLSNRCRT--ISVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHL 103
           V  F QPL L +  R+    +  SC R+  +G+    + ++  D+ L+LK K+++V P+L
Sbjct: 34  VEKFAQPLVLGSDRRSCGAKLKVSCSRKP-AGI---DKTYYSADEALVLKQKAEDVVPYL 93

Query: 104 NGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRD 163
           N +CIYLVGMMGSGKTT+GKILA+ L Y+F DSD LVE+ VG +SVAEIF+L+ E FFRD
Sbjct: 94  NDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFRD 153

Query: 164 KETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSR 223
            E+EVLR LSSMH  V++TGGG V+RPINW YM+ G +IWLDVPL+ALA+RIAAVGT SR
Sbjct: 154 NESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDVPLDALARRIAAVGTASR 213

Query: 224 PLLHNESGNGYTKVF--------------------VNIAGLAAKLGLSDVCNLTPEDIAI 273
           PLLH ESG+ Y K +                    V++  +A K G S+V  LTP  IAI
Sbjct: 214 PLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAVKQGHSNVTTLTPSAIAI 273

[Close]
BLAST of Carg05266-RA vs. Swiss-Prot
Match: sp|Q5NTH4|SK1_ORYSJ (Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK1 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.8e-56
Identity = 113/198 (57.07%), Postives = 141/198 (71.21%), Query Frame = 0 

Query: 85  DKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELRYAFSDSDTLVEQEVGG 144
           D+ LLLK KS+EV  +LNG+CIYLVGMMGSGK+T+GKI+++ L Y+F DSD LVEQ VG 
Sbjct: 78  DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query: 145 TSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRPINWKYMQNGISIWLDV 204
            SVA+IFK++ E FFRD E+ VLR LSSM   V++TGGG V+RP+NWKYM+ G+S+WLDV
Sbjct: 138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query: 205 PLEALAKRIAAVGTDSRPLLHNESGNGYTKVF--------------------VNIAGLAA 263
           PL+ALA+RIA VGT SRPLL   SG+ YT  F                    V++  +A+
Sbjct: 198 PLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSMLAEQRGDAYANADVRVSLEEIAS 257

[Close]
BLAST of Carg05266-RA vs. TrEMBL
Match: tr|A0A0A0KFZ0|A0A0A0KFZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 4.9e-123
Identity = 230/282 (81.56%), Postives = 240/282 (85.11%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           MEVN GHLQ+LSIRID GM VRKPSGSVRFL PIS QQKLP +VSAFQQPLRLSNRCRT+
Sbjct: 1   MEVNFGHLQHLSIRIDFGMVVRKPSGSVRFLQPISDQQKLPGLVSAFQQPLRLSNRCRTV 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           SV  SCYRENISGL LETE  HPFDKDLLLKNKSQEVQPHLNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVETSCYRENISGLTLETEKSHPFDKDLLLKNKSQEVQPHLNGQCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILAKEL Y FSDSDTLVEQEVGGTSVA+IFKL+GE FFRDKETEVLRKLS MHGFVIST
Sbjct: 121 KILAKELGYTFSDSDTLVEQEVGGTSVADIFKLHGEVFFRDKETEVLRKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYM+NGISIWLDVPLEALAKRIAAVGTDSRPLLH+ESGN YTK F    
Sbjct: 181 GGGIVVRPINWKYMRNGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYTKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LA KLGLSDVCNLTP DIA+E
Sbjct: 241 VLLEERGDAYANANAKVCLGSLADKLGLSDVCNLTPADIAVE 282

[Close]
BLAST of Carg05266-RA vs. TrEMBL
Match: tr|A0A1S3B0E4|A0A1S3B0E4_CUCME (shikimate kinase 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484699 PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 6.2e-118
Identity = 222/282 (78.72%), Postives = 236/282 (83.69%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           ME N GHLQ+LSIRID G  VRKPSGSVRFL PIS +QKLP +VSAFQQPLRLSNRCRT+
Sbjct: 1   MEANFGHLQHLSIRIDFGTVVRKPSGSVRFLQPISDRQKLPGLVSAFQQPLRLSNRCRTV 60

Query: 61  SVGASCYRENISGLALETENFHPFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIG 120
           SV  SCYRENIS L LETE FHPFDKDLLLKNKSQEV+P LNG+CIYLVGMMGSGKTTIG
Sbjct: 61  SVETSCYRENISDLTLETEIFHPFDKDLLLKNKSQEVRPLLNGRCIYLVGMMGSGKTTIG 120

Query: 121 KILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIST 180
           KILA+EL Y FSDSDTLVEQ+VGGTSVA+IFKL+GE FFRDKETEVL+KLS MHGFVIST
Sbjct: 121 KILARELGYTFSDSDTLVEQDVGGTSVADIFKLHGEVFFRDKETEVLKKLSLMHGFVIST 180

Query: 181 GGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF---- 240
           GGGIVVRPINWKYM+NGISIWLDVPLEALAKRIAAVGTDSRPLLH+ESGN Y K F    
Sbjct: 181 GGGIVVRPINWKYMRNGISIWLDVPLEALAKRIAAVGTDSRPLLHHESGNAYMKAFRRLS 240

Query: 241 ----------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                           V +  LA KLGLSDVCNLTP DIAIE
Sbjct: 241 VLLEERGDAYANANAKVCLGSLADKLGLSDVCNLTPADIAIE 282

[Close]
BLAST of Carg05266-RA vs. TrEMBL
Match: tr|M5W0C8|M5W0C8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G172800 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 7.5e-79
Identity = 161/284 (56.69%), Postives = 194/284 (68.31%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSAFQQPLRLSNRCRTI 60
           ME  V H    S  IDS    R+PS S R    + +Q KL  +V+A     R+SNR R +
Sbjct: 4   MEATVAHRLQFSTWIDSEKVARRPSSSARCSQRLKEQNKLRVLVAAHLPSSRVSNRQRHV 63

Query: 61  SVGASCYRENISGLALETENFH-PFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTI 120
           ++  SC         +E+ NF  PFD+ L+LKNK+Q ++P+LNG+CIYLVGMMGSGKTT+
Sbjct: 64  ALEVSCSYNKFPASTVESGNFQTPFDESLVLKNKAQAIEPYLNGRCIYLVGMMGSGKTTV 123

Query: 121 GKILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVIS 180
           GKIL++ + Y+F DSDTLVE EVGGTSVAEIFKL GE FFRDKETEVLRKLS MH  V+S
Sbjct: 124 GKILSQAINYSFIDSDTLVEHEVGGTSVAEIFKLNGEGFFRDKETEVLRKLSLMHHLVVS 183

Query: 181 TGGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF--- 240
           TGGG VVRPINWK M+ GIS+WLDVPLEALA+RIAAVGT SRPLLH+ESG+ Y K F   
Sbjct: 184 TGGGAVVRPINWKCMKKGISVWLDVPLEALAQRIAAVGTGSRPLLHHESGDAYRKTFMRL 243

Query: 241 -----------------VNIAGLAAKLGLSDVCNLTPEDIAIEV 264
                            V++  +AAKLG  DV +LTP  I IEV
Sbjct: 244 TSLFEQRGDSYANASARVSLENIAAKLGYRDVSSLTPTAIVIEV 287

[Close]
BLAST of Carg05266-RA vs. TrEMBL
Match: tr|Q30CZ9|Q30CZ9_FAGSY (Putative shikimate kinase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7382 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 163/274 (59.49%), Postives = 191/274 (69.71%), Query Frame = 0 

Query: 11  LSIRIDSGMFVRKPSGSVRFLLPISKQQKLPPVVSA-FQQPLRLSNRCRTISVGASCYRE 70
           +S RI S  F R+  GSVR      +Q +LP +VSA  Q   R SN  +T S+  SC  +
Sbjct: 11  VSPRIGSERFARRTCGSVRVSRRFREQDRLPVLVSAQLQDKTRNSNWHKTASLEVSCSYK 70

Query: 71  NISGLALETENFH-PFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGKTTIGKILAKELR 130
           N     LE+   H PFD  L+LKNKSQE++P+L+G+CIYLVGMMGSGKTT+GK+L++ L 
Sbjct: 71  NFPASVLESGGIHAPFDDALILKNKSQEIEPYLSGRCIYLVGMMGSGKTTVGKVLSQVLS 130

Query: 131 YAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGFVISTGGGIVVRP 190
           YAF DSDTLVEQ+V   SVAEIF LYGE FFRDKETEVLRKLS MH  V+STGGG VVRP
Sbjct: 131 YAFFDSDTLVEQDVDANSVAEIFNLYGEGFFRDKETEVLRKLSLMHRLVVSTGGGAVVRP 190

Query: 191 INWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVFVNIAGL------ 250
           INWKYMQ GIS+WLDVPLEALA+RIAAVGT SRPLLH++SG+ YTK F+ +  L      
Sbjct: 191 INWKYMQKGISVWLDVPLEALARRIAAVGTGSRPLLHHDSGDAYTKTFMRLTSLMEERSE 250

Query: 251 --------------AAKLGLSDVCNLTPEDIAIE 263
                         AAKLG  DV NLTP  IAIE
Sbjct: 251 AYANANARVSLEDVAAKLGHRDVSNLTPTAIAIE 284

[Close]
BLAST of Carg05266-RA vs. TrEMBL
Match: tr|A0A2P4HMA9|A0A2P4HMA9_QUESU (Shikimate kinase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_06012 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.1e-77
Identity = 164/286 (57.34%), Postives = 199/286 (69.58%), Query Frame = 0 

Query: 1   MEVNVGHLQNLSIRIDSGMFVRK--PSGSVRFLLPISKQQKLPPVVSAFQQP-LRLSNRC 60
           ME  + +   +S RIDS    R+     SV+F     +Q +L  +VSA  QP +R SNR 
Sbjct: 1   MEAKIANGLLVSPRIDSEKVARRIGTGRSVQFSRRFKEQDRLQVLVSAQLQPKIRNSNRH 60

Query: 61  RTISVGASCYRENISGLALETENFH-PFDKDLLLKNKSQEVQPHLNGKCIYLVGMMGSGK 120
           +T+S+  SC  +N     LE+  F  PFD+  +LKNKSQE+ P+L+G+CIYLVGMMGSGK
Sbjct: 61  KTVSLEVSCSYKNFPASLLESGGFQAPFDEARILKNKSQEIGPYLSGRCIYLVGMMGSGK 120

Query: 121 TTIGKILAKELRYAFSDSDTLVEQEVGGTSVAEIFKLYGEEFFRDKETEVLRKLSSMHGF 180
           TT+GK+L++ L Y+F DSDTLVEQ+V GTSVAEIFKLYGE FFRDKETEVLRKLS MH  
Sbjct: 121 TTVGKVLSQVLGYSFFDSDTLVEQDVEGTSVAEIFKLYGEGFFRDKETEVLRKLSLMHRL 180

Query: 181 VISTGGGIVVRPINWKYMQNGISIWLDVPLEALAKRIAAVGTDSRPLLHNESGNGYTKVF 240
           V+STGGG VVRPINWKYMQ GIS+WLDVPLE LA+RIAAVGT SRPLLH++SG+ YTK  
Sbjct: 181 VVSTGGGAVVRPINWKYMQKGISVWLDVPLEDLARRIAAVGTGSRPLLHHDSGDAYTKTL 240

Query: 241 --------------------VNIAGLAAKLGLSDVCNLTPEDIAIE 263
                               V++  +AAKLG  DV NLTP  IAIE
Sbjct: 241 TRLNTLMEERSDAYANANARVSLEDIAAKLGHRDVSNLTPTAIAIE 286

The following BLAST results are available for this feature:
BLAST of Carg05266-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963330.15.3e-13789.72shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022963332.1 shik... [more]
XP_023518721.15.3e-13789.36shikimate kinase 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023518723.1 s... [more]
XP_023004078.11.2e-13689.36shikimate kinase 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_0230040... [more]
XP_022950653.12.6e-12381.56shikimate kinase 1, chloroplastic-like [Cucurbita moschata] >XP_022950654.1 shik... [more]
XP_022977943.13.3e-12381.21shikimate kinase 1, chloroplastic-like [Cucurbita maxima] >XP_022977944.1 shikim... [more]
BLAST of Carg05266-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21940.43.1e-7052.92shikimate kinase 1[more]
AT4G39540.31.2e-5849.28shikimate kinase 2[more]
AT3G26900.13.8e-2832.68shikimate kinase like 1[more]
BLAST of Carg05266-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SJ05|SK1_ARATH1.4e-6752.92Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK1 PE=1 SV... [more]
sp|Q00497|SK_SOLLC5.2e-6747.67Shikimate kinase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=SK PE=1 SV=1[more]
sp|Q8GY88|SK2_ARATH6.1e-6051.12Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SK2 PE=1 SV... [more]
sp|Q7X7H9|SK3_ORYSJ6.1e-6051.39Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK... [more]
sp|Q5NTH4|SK1_ORYSJ1.8e-5657.07Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=SK... [more]
BLAST of Carg05266-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KFZ0|A0A0A0KFZ0_CUCSA4.9e-12381.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487590 PE=3 SV=1[more]
tr|A0A1S3B0E4|A0A1S3B0E4_CUCME6.2e-11878.72shikimate kinase 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484699 PE=3 S... [more]
tr|M5W0C8|M5W0C8_PRUPE7.5e-7956.69Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G172800 PE=3 SV=1[more]
tr|Q30CZ9|Q30CZ9_FAGSY1.3e-7859.49Putative shikimate kinase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7382 PE=2 SV=1[more]
tr|A0A2P4HMA9|A0A2P4HMA9_QUESU3.1e-7757.34Shikimate kinase, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_06012 PE=3 SV... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000623Shikimate_kinase/TSH1
IPR023000Shikimate_kinase_CS
IPR031322Shikimate/glucono_kinase
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg05266Carg05266gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg05266-RACarg05266-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05266-RA.three_prime_UTR.1Carg05266-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05266-RA.CDS.9Carg05266-RA.CDS.9CDS
Carg05266-RA.CDS.8Carg05266-RA.CDS.8CDS
Carg05266-RA.CDS.7Carg05266-RA.CDS.7CDS
Carg05266-RA.CDS.6Carg05266-RA.CDS.6CDS
Carg05266-RA.CDS.5Carg05266-RA.CDS.5CDS
Carg05266-RA.CDS.4Carg05266-RA.CDS.4CDS
Carg05266-RA.CDS.3Carg05266-RA.CDS.3CDS
Carg05266-RA.CDS.2Carg05266-RA.CDS.2CDS
Carg05266-RA.CDS.1Carg05266-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05266-RA.five_prime_UTR.1Carg05266-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg05266-RA.exon.9Carg05266-RA.exon.9exon
Carg05266-RA.exon.8Carg05266-RA.exon.8exon
Carg05266-RA.exon.7Carg05266-RA.exon.7exon
Carg05266-RA.exon.6Carg05266-RA.exon.6exon
Carg05266-RA.exon.5Carg05266-RA.exon.5exon
Carg05266-RA.exon.4Carg05266-RA.exon.4exon
Carg05266-RA.exon.3Carg05266-RA.exon.3exon
Carg05266-RA.exon.2Carg05266-RA.exon.2exon
Carg05266-RA.exon.1Carg05266-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01100SHIKIMTKNASEcoord: 106..121
score: 59.62
coord: 130..143
score: 37.36
coord: 197..214
score: 32.05
coord: 177..186
score: 67.69
coord: 159..167
score: 56.41
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 87..267
e-value: 2.5E-59
score: 202.7
NoneNo IPR availablePANTHERPTHR21087:SF5SUBFAMILY NOT NAMEDcoord: 55..244
NoneNo IPR availablePANTHERPTHR21087SHIKIMATE KINASEcoord: 55..244
IPR031322Shikimate kinase/gluconokinasePFAMPF01202SKIcoord: 112..229
e-value: 6.8E-43
score: 146.4
IPR023000Shikimate kinase, conserved sitePROSITEPS01128SHIKIMATE_KINASEcoord: 160..185
IPR000623Shikimate kinase/Threonine synthase-like 1HAMAPMF_00109Shikimate_kinasecoord: 103..268
score: 22.676
IPR000623Shikimate kinase/Threonine synthase-like 1CDDcd00464SKcoord: 106..236
e-value: 1.80814E-54
score: 176.592
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 104..221