Carg05115-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGGGCTCCATGCTGTGAGAAAGTGGGGCTGAAGAGAGGGCCATGGAGCCCTCAAGAAGACCAAATTCTTATCAAATTCATTCAACAAAATGGGCATTCCAATTGGAGGGCACTTCCCAAAAGAGCTGGTTTATATCTTATTTGCAAAACCCATTATGTAAATTCTCTTCGATTTGTATTTTATCGTTTATTTTGTATCGTATTGTAGGACTGTTACGGTGCGGGAAAAGTTGTAGGCTTCGATGGATCAATTATCTAAGGCCAGACCTTAAACGAGGAGATTTCACTCGTGAAGAAGAGGAGACGATTATAAACTTGCATCGATTGTTGGGAAACAGGTGCTTTTTGATCTTTTTCAAATGGGTATCCTCGAAATAGTCTCGATTGTTGGGTTTGTTTTAGTTCAACTGATGGGAGGGTTGGAATCACTCGGCTCTTAGTTGAGAGTAATATTTTTTAACTAATTGAGCTATATTCAAGTTGATCTGTTTCGGTTGAAACTTTACTAAAAGTTTCATTTTTTATGGTTCACAATATTGATTGATGTGGGTTGGTAAACAATATTGTTAGTTTAAATTATCTATTACAAATTTGCTAATGGTATTATTTAATTATGTAATTTCTTTGTATTATTCAGATGGTCGATGATTGCAGCAAAGTTACCTGGAAGAACAGATAACGAGATTAAAAATGTTTGGCACACTTCTTTGAAGAAGAGATTAAACCAAAGCCAAACTCGAGAAGATCACACCGAGCTAAACAAGAATGACATCCCTTTTCGAGATCAACCACCATATTCGTTGGATATCAAATCAGACGGAGAGGAAAATGTTGATCATTGTACTAAGAACAACGATGATGATAATGATACCAGACTCGAGGAGTTTGCTTTTGCAAAAGATTTCTTAGAAAATTTATTTTCGGAAGAAGAAATTTTTCCGAACAATTGTGATATGATAAAAAATGATGATCAATCACCCAAAGAAGTTGAAATTTCTTCGGACACCGTTGATATCATGGATTTTTGGAGAGGTGTTTTTATGAAAGATGGAGAGTTACCCGAGCTATTTAATGAATTTCCCTCATCTATTCTAAGTTGTACACATTCCTAA ATGGGAAGGGCTCCATGCTGTGAGAAAGTGGGGCTGAAGAGAGGGCCATGGAGCCCTCAAGAAGACCAAATTCTTATCAAATTCATTCAACAAAATGGGCATTCCAATTGGAGGGCACTTCCCAAAAGAGCTGGACTGTTACGGTGCGGGAAAAGTTGTAGGCTTCGATGGATCAATTATCTAAGGCCAGACCTTAAACGAGGAGATTTCACTCGTGAAGAAGAGGAGACGATTATAAACTTGCATCGATTGTTGGGAAACAGATGGTCGATGATTGCAGCAAAGTTACCTGGAAGAACAGATAACGAGATTAAAAATGTTTGGCACACTTCTTTGAAGAAGAGATTAAACCAAAGCCAAACTCGAGAAGATCACACCGAGCTAAACAAGAATGACATCCCTTTTCGAGATCAACCACCATATTCGTTGGATATCAAATCAGACGGAGAGGAAAATGTTGATCATTGTACTAAGAACAACGATGATGATAATGATACCAGACTCGAGGAGTTTGCTTTTGCAAAAGATTTCTTAGAAAATTTATTTTCGGAAGAAGAAATTTTTCCGAACAATTGTGATATGATAAAAAATGATGATCAATCACCCAAAGAAGTTGAAATTTCTTCGGACACCGTTGATATCATGGATTTTTGGAGAGGTGTTTTTATGAAAGATGGAGAGTTACCCGAGCTATTTAATGAATTTCCCTCATCTATTCTAAGTTGTACACATTCCTAA ATGGGAAGGGCTCCATGCTGTGAGAAAGTGGGGCTGAAGAGAGGGCCATGGAGCCCTCAAGAAGACCAAATTCTTATCAAATTCATTCAACAAAATGGGCATTCCAATTGGAGGGCACTTCCCAAAAGAGCTGGACTGTTACGGTGCGGGAAAAGTTGTAGGCTTCGATGGATCAATTATCTAAGGCCAGACCTTAAACGAGGAGATTTCACTCGTGAAGAAGAGGAGACGATTATAAACTTGCATCGATTGTTGGGAAACAGATGGTCGATGATTGCAGCAAAGTTACCTGGAAGAACAGATAACGAGATTAAAAATGTTTGGCACACTTCTTTGAAGAAGAGATTAAACCAAAGCCAAACTCGAGAAGATCACACCGAGCTAAACAAGAATGACATCCCTTTTCGAGATCAACCACCATATTCGTTGGATATCAAATCAGACGGAGAGGAAAATGTTGATCATTGTACTAAGAACAACGATGATGATAATGATACCAGACTCGAGGAGTTTGCTTTTGCAAAAGATTTCTTAGAAAATTTATTTTCGGAAGAAGAAATTTTTCCGAACAATTGTGATATGATAAAAAATGATGATCAATCACCCAAAGAAGTTGAAATTTCTTCGGACACCGTTGATATCATGGATTTTTGGAGAGGTGTTTTTATGAAAGATGGAGAGTTACCCGAGCTATTTAATGAATTTCCCTCATCTATTCTAAGTTGTACACATTCCTAA MGRAPCCEKVGLKRGPWSPQEDQILIKFIQQNGHSNWRALPKRAGLLRCGKSCRLRWINYLRPDLKRGDFTREEEETIINLHRLLGNRWSMIAAKLPGRTDNEIKNVWHTSLKKRLNQSQTREDHTELNKNDIPFRDQPPYSLDIKSDGEENVDHCTKNNDDDNDTRLEEFAFAKDFLENLFSEEEIFPNNCDMIKNDDQSPKEVEISSDTVDIMDFWRGVFMKDGELPELFNEFPSSILSCTHS
BLAST of Carg05115-RA vs. NCBI nr
Match: XP_023515116.1 (transcription factor MYB14-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 472.6 bits (1215), Expect = 8.0e-130 Identity = 224/231 (96.97%), Postives = 228/231 (98.70%), Query Frame = 0
BLAST of Carg05115-RA vs. NCBI nr
Match: XP_022959668.1 (transcription factor MYB4-like [Cucurbita moschata]) HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128 Identity = 223/231 (96.54%), Postives = 226/231 (97.84%), Query Frame = 0
BLAST of Carg05115-RA vs. NCBI nr
Match: XP_023004363.1 (transcription factor MYB13-like [Cucurbita maxima]) HSP 1 Score: 454.9 bits (1169), Expect = 1.7e-124 Identity = 216/231 (93.51%), Postives = 221/231 (95.67%), Query Frame = 0
BLAST of Carg05115-RA vs. NCBI nr
Match: XP_008451250.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo]) HSP 1 Score: 340.5 bits (872), Expect = 4.7e-90 Identity = 175/252 (69.44%), Postives = 197/252 (78.17%), Query Frame = 0
BLAST of Carg05115-RA vs. NCBI nr
Match: XP_022143611.1 (transcription factor MYB14-like [Momordica charantia]) HSP 1 Score: 339.7 bits (870), Expect = 8.1e-90 Identity = 177/258 (68.60%), Postives = 198/258 (76.74%), Query Frame = 0
BLAST of Carg05115-RA vs. TAIR10
Match: AT3G23250.1 (myb domain protein 15) HSP 1 Score: 223.0 bits (567), Expect = 2.0e-58 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = 0
BLAST of Carg05115-RA vs. TAIR10
Match: AT2G31180.1 (myb domain protein 14) HSP 1 Score: 222.6 bits (566), Expect = 2.6e-58 Identity = 123/250 (49.20%), Postives = 163/250 (65.20%), Query Frame = 0
BLAST of Carg05115-RA vs. TAIR10
Match: AT1G06180.1 (myb domain protein 13) HSP 1 Score: 214.2 bits (544), Expect = 9.3e-56 Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0
BLAST of Carg05115-RA vs. TAIR10
Match: AT1G79180.1 (myb domain protein 63) HSP 1 Score: 204.9 bits (520), Expect = 5.6e-53 Identity = 111/226 (49.12%), Postives = 142/226 (62.83%), Query Frame = 0
BLAST of Carg05115-RA vs. TAIR10
Match: AT3G61250.1 (myb domain protein 17) HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51 Identity = 82/116 (70.69%), Postives = 102/116 (87.93%), Query Frame = 0
BLAST of Carg05115-RA vs. Swiss-Prot
Match: sp|Q9LTC4|MYB15_ARATH (Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 3.6e-57 Identity = 98/130 (75.38%), Postives = 114/130 (87.69%), Query Frame = 0
BLAST of Carg05115-RA vs. Swiss-Prot
Match: sp|Q9SJX8|MYB14_ARATH (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 4.7e-57 Identity = 123/250 (49.20%), Postives = 163/250 (65.20%), Query Frame = 0
BLAST of Carg05115-RA vs. Swiss-Prot
Match: sp|Q7XBH4|MYB4_ORYSJ (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2) HSP 1 Score: 219.5 bits (558), Expect = 4.0e-56 Identity = 93/117 (79.49%), Postives = 111/117 (94.87%), Query Frame = 0
BLAST of Carg05115-RA vs. Swiss-Prot
Match: sp|Q6K1S6|MYB30_ORYSJ (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 2.0e-55 Identity = 94/116 (81.03%), Postives = 109/116 (93.97%), Query Frame = 0
BLAST of Carg05115-RA vs. Swiss-Prot
Match: sp|Q9LNC9|MYB13_ARATH (Transcription factor MYB13 OS=Arabidopsis thaliana OX=3702 GN=MYB13 PE=2 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.7e-54 Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0
BLAST of Carg05115-RA vs. TrEMBL
Match: tr|A0A1S3BR10|A0A1S3BR10_CUCME (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103492597 PE=4 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 3.1e-90 Identity = 175/252 (69.44%), Postives = 197/252 (78.17%), Query Frame = 0
BLAST of Carg05115-RA vs. TrEMBL
Match: tr|A0A0A0KAA1|A0A0A0KAA1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G375780 PE=4 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 8.5e-88 Identity = 170/252 (67.46%), Postives = 195/252 (77.38%), Query Frame = 0
BLAST of Carg05115-RA vs. TrEMBL
Match: tr|A0A0K1SB66|A0A0K1SB66_REHGL (R2R3-MYB protein OS=Rehmannia glutinosa OX=99300 GN=MYB11 PE=2 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62 Identity = 128/252 (50.79%), Postives = 176/252 (69.84%), Query Frame = 0
BLAST of Carg05115-RA vs. TrEMBL
Match: tr|A0A0V0HMD9|A0A0V0HMD9_SOLCH (Putative myb-related protein Myb4-like OS=Solanum chacoense OX=4108 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 9.2e-58 Identity = 126/266 (47.37%), Postives = 160/266 (60.15%), Query Frame = 0
BLAST of Carg05115-RA vs. TrEMBL
Match: tr|M1BCC5|M1BCC5_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102595003 PE=4 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57 Identity = 128/271 (47.23%), Postives = 164/271 (60.52%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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