Carg04979-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04979-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor
Location	Cucurbita_argyrosperma_scaffold_060 : 618786 .. 619382 (+)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACAAACTCCCACCATTCTCAACCCACCACCACCTCCTCCGCCTCTTCTTCCGCCTCTTCCTCCGGCGAGAACAGCCGAAAGAGGCCGAGGGGCACGACAACGACGAGCAACATAGAGAGCGAGAGCGAATCGAGCCACTCGACGAGGAAGTACAGAGGGGTTCGTCGAAGAGCGTGGGGAAAATGGGTGTCCGAAATAAGGGAGCCAAGGAAGAAATCAAGGATATGGCTCGGTACGTACTCGACCGCGGAGATGGCGGCACGAGCACACGACGCGGCGGCTCTTGCCATCAAAGGCTGTGGTGCATTCCTCAACTTCCCTGAACTCAAACACCAACTCCCCCGCCCTGCCTCCCTCTCCGCCAAGGACATCCAGGCGGCCGCCGCAGACGCAGCCACCCTGAAACCACCAATGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGACGTGGTTTGATTTGCCGGATCTTGTGGTCGGAGGGAGTGATGGGCTGCTGCTGGCCGGCTATGATTCGCCGTGGCAGTTCGGTGGAGATCAACAAAATTCATGGCATTGGGACTCTTATTCTCATACTATTCTTCCTTGA

mRNA sequence

ATGAACACAAACTCCCACCATTCTCAACCCACCACCACCTCCTCCGCCTCTTCTTCCGCCTCTTCCTCCGGCGAGAACAGCCGAAAGAGGCCGAGGGGCACGACAACGACGAGCAACATAGAGAGCGAGAGCGAATCGAGCCACTCGACGAGGAAGTACAGAGGGGTTCGTCGAAGAGCGTGGGGAAAATGGGTGTCCGAAATAAGGGAGCCAAGGAAGAAATCAAGGATATGGCTCGGTACGTACTCGACCGCGGAGATGGCGGCACGAGCACACGACGCGGCGGCTCTTGCCATCAAAGGCTGTGGTGCATTCCTCAACTTCCCTGAACTCAAACACCAACTCCCCCGCCCTGCCTCCCTCTCCGCCAAGGACATCCAGGCGGCCGCCGCAGACGCAGCCACCCTGAAACCACCAATGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGACGTGGTTTGATTTGCCGGATCTTGTGGTCGGAGGGAGTGATGGGCTGCTGCTGGCCGGCTATGATTCGCCGTGGCAGTTCGGTGGAGATCAACAAAATTCATGGCATTGGGACTCTTATTCTCATACTATTCTTCCTTGA

Coding sequence (CDS)

ATGAACACAAACTCCCACCATTCTCAACCCACCACCACCTCCTCCGCCTCTTCTTCCGCCTCTTCCTCCGGCGAGAACAGCCGAAAGAGGCCGAGGGGCACGACAACGACGAGCAACATAGAGAGCGAGAGCGAATCGAGCCACTCGACGAGGAAGTACAGAGGGGTTCGTCGAAGAGCGTGGGGAAAATGGGTGTCCGAAATAAGGGAGCCAAGGAAGAAATCAAGGATATGGCTCGGTACGTACTCGACCGCGGAGATGGCGGCACGAGCACACGACGCGGCGGCTCTTGCCATCAAAGGCTGTGGTGCATTCCTCAACTTCCCTGAACTCAAACACCAACTCCCCCGCCCTGCCTCCCTCTCCGCCAAGGACATCCAGGCGGCCGCCGCAGACGCAGCCACCCTGAAACCACCAATGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGACGTGGTTTGATTTGCCGGATCTTGTGGTCGGAGGGAGTGATGGGCTGCTGCTGGCCGGCTATGATTCGCCGTGGCAGTTCGGTGGAGATCAACAAAATTCATGGCATTGGGACTCTTATTCTCATACTATTCTTCCTTGA

Protein sequence

MNTNSHHSQPTTTSSASSSASSSGENSRKRPRGTTTTSNIESESESSHSTRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELKHQLPRPASLSAKDIQAAAADAATLKPPMAEEEEEEEEEEETWFDLPDLVVGGSDGLLLAGYDSPWQFGGDQQNSWHWDSYSHTILP

Homology

[Close]

BLAST of Carg04979-RA vs. NCBI nr
Match: XP_023004375.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 2.3e-63
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP
Sbjct: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109

Query: 110 ELKHQLPRPASLSAKDIQAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 169
           ELKHQLPRPASLSAKDIQA   XXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL
Sbjct: 110 ELKHQLPRPASLSAKDIQA---XXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 169

Query: 170 LAGYDSPWQFGGDQQNSWHWDSYSHTILP 199
           LAGYDSPWQFGGDQQNSWHWDSYSHTILP
Sbjct: 170 LAGYDSPWQFGGDQQNSWHWDSYSHTILP 195

[Close]

BLAST of Carg04979-RA vs. NCBI nr
Match: XP_022959732.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 8.9e-63
Identity = 145/149 (97.32%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP
Sbjct: 49  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 108

Query: 110 ELKHQLPRPASLSAKDIQAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 169
           ELKHQLPRPASLSAKDIQA   XXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL
Sbjct: 109 ELKHQLPRPASLSAKDIQA---XXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 168

Query: 170 LAGYDSPWQFGGDQQNSWHWDSYSHTILP 199
           LAGYDSPWQFGGDQQ+SWHWDSYSHTILP
Sbjct: 169 LAGYDSPWQFGGDQQHSWHWDSYSHTILP 194

[Close]

BLAST of Carg04979-RA vs. NCBI nr
Match: XP_023515152.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 9.8e-62
Identity = 146/149 (97.99%), Postives = 146/149 (97.99%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP
Sbjct: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109

Query: 110 ELKHQLPRPASLSAKDIQAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 169
           ELKHQLPRPASLSAKDIQA XXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL
Sbjct: 110 ELKHQLPRPASLSAKDIQA-XXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGLL 169

Query: 170 LAGYDSPWQFGGDQQNSWHWDSYSHTILP 199
           LA YDSPWQFGGDQQ SWHWDSYSHTILP
Sbjct: 170 LARYDSPWQFGGDQQTSWHWDSYSHTILP 197

[Close]

BLAST of Carg04979-RA vs. NCBI nr
Match: XP_022959279.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita moschata])

HSP 1 Score: 167.5 bits (423), Expect = 4.4e-38
Identity = 96/162 (59.26%), Postives = 103/162 (63.58%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           T K+RGVR RAWGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  AFLNFP
Sbjct: 29  TPKFRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFP 88

Query: 110 ELKHQLPRPASLSAKDI-----QAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGG 169
           ++KHQLPRPASLSAKDI     QA                         WFDLPDLVV G
Sbjct: 89  QIKHQLPRPASLSAKDIQAAAAQAAALKHQPNPTESSPSETTSCEEEDTWFDLPDLVVRG 148

Query: 170 -SDGLLL------AGYDSPWQFGGDQQN-SWHWDSYSHTILP 199
            +DG LL      +     W F GD  +  WH D Y+HTI P
Sbjct: 149 INDGFLLDFDYSSSXXXXSWHFSGDHDDLQWHSD-YAHTIFP 189

[Close]

BLAST of Carg04979-RA vs. NCBI nr
Match: XP_022974292.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita maxima])

HSP 1 Score: 166.4 bits (420), Expect = 9.9e-38
Identity = 96/163 (58.90%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           T K+RGVR RAWGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  AFLNFP
Sbjct: 29  TPKFRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFP 88

Query: 110 ELKHQLPRPASLSAKDI-----QAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGG 169
           ++KHQLPRPASLSAKDI     QA                         WFDLPDLVV G
Sbjct: 89  QIKHQLPRPASLSAKDIQAAAAQAAALKHQPNPTESSPSETTSCEEEETWFDLPDLVVRG 148

Query: 170 -SDGLLL-------AGYDSPWQFGGDQQN-SWHWDSYSHTILP 199
            +DG LL             W F GD  +  WH D Y+HTI P
Sbjct: 149 INDGFLLDFDXXXXXXXXXXWHFSGDHDDLQWHSD-YAHTIFP 190

[Close]

BLAST of Carg04979-RA vs. TAIR10
Match: AT3G60490.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-30
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG   FLNFPEL 
Sbjct: 71  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELS 130

Query: 113 HQLPRPASLSAKDIQA 129
             LPRP S S KDIQA
Sbjct: 131 GLLPRPVSCSPKDIQA 146

[Close]

BLAST of Carg04979-RA vs. TAIR10
Match: AT2G44940.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  A+LNFP+L 
Sbjct: 100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLA 159

Query: 113 HQLPRPASLSAKDIQA 129
            +LPRP + S KDIQA
Sbjct: 160 GELPRPVTNSPKDIQA 175

[Close]

BLAST of Carg04979-RA vs. TAIR10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 3.5e-29
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R WGKWVSEIREPRKKSRIWLGT+ST EMAARAHDAAAL IKG  A LNFPEL 
Sbjct: 43  YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELA 102

Query: 113 HQLPRPASLSAKDIQA 129
             LPRPAS S +D+QA
Sbjct: 103 TYLPRPASSSPRDVQA 118

[Close]

BLAST of Carg04979-RA vs. TAIR10
Match: AT2G25820.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRG R R+WGKWVSEIREPRKKSRIWLGT+ TAEMAARAHD AAL+IKG  A LNFPEL 
Sbjct: 26  YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELA 85

Query: 113 HQLPRPASLSAKDIQA 129
             LPRP SLS +DIQA
Sbjct: 86  DFLPRPVSLSQQDIQA 101

[Close]

BLAST of Carg04979-RA vs. TAIR10
Match: AT4G16750.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-28
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           +RGVR R WGKWVSEIREPRKKSRIWLGT+ST EMAARAHD AALAIKG  A LNFPEL 
Sbjct: 40  FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELA 99

Query: 113 HQLPRPASLSAKDIQ 128
           + LPRPAS   KDIQ
Sbjct: 100 YHLPRPASADPKDIQ 114

[Close]

BLAST of Carg04979-RA vs. Swiss-Prot
Match: sp|Q9M210|ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana OX=3702 GN=ERF035 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.7e-29
Identity = 63/76 (82.89%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG   FLNFPEL 
Sbjct: 71  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELS 130

Query: 113 HQLPRPASLSAKDIQA 129
             LPRP S S KDIQA
Sbjct: 131 GLLPRPVSCSPKDIQA 146

[Close]

BLAST of Carg04979-RA vs. Swiss-Prot
Match: sp|Q8LBQ7|ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 GN=ERF034 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 3.7e-28
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  A+LNFP+L 
Sbjct: 100 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLA 159

Query: 113 HQLPRPASLSAKDIQA 129
            +LPRP + S KDIQA
Sbjct: 160 GELPRPVTNSPKDIQA 175

[Close]

BLAST of Carg04979-RA vs. Swiss-Prot
Match: sp|O80654|ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 GN=ERF037 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-28
Identity = 61/76 (80.26%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R WGKWVSEIREPRKKSRIWLGT+ST EMAARAHDAAAL IKG  A LNFPEL 
Sbjct: 43  YRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELA 102

Query: 113 HQLPRPASLSAKDIQA 129
             LPRPAS S +D+QA
Sbjct: 103 TYLPRPASSSPRDVQA 118

[Close]

BLAST of Carg04979-RA vs. Swiss-Prot
Match: sp|Q52QU1|ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 GN=ERF042 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.8e-27
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRG R R+WGKWVSEIREPRKKSRIWLGT+ TAEMAARAHD AAL+IKG  A LNFPEL 
Sbjct: 26  YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELA 85

Query: 113 HQLPRPASLSAKDIQA 129
             LPRP SLS +DIQA
Sbjct: 86  DFLPRPVSLSQQDIQA 101

[Close]

BLAST of Carg04979-RA vs. Swiss-Prot
Match: sp|Q9SUK8|ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 GN=ERF039 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           +RGVR R WGKWVSEIREPRKKSRIWLGT+ST EMAARAHD AALAIKG  A LNFPEL 
Sbjct: 40  FRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELA 99

Query: 113 HQLPRPASLSAKDIQ 128
           + LPRPAS   KDIQ
Sbjct: 100 YHLPRPASADPKDIQ 114

[Close]

BLAST of Carg04979-RA vs. TrEMBL
Match: tr|A0A1S3CBH6|A0A1S3CBH6_CUCME (ethylene-responsive transcription factor ERF039-like OS=Cucumis melo OX=3656 GN=LOC103499073 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.7e-36
Identity = 96/165 (58.18%), Postives = 103/165 (62.42%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           T K+RGVR R WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  AFLNFP
Sbjct: 39  TPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFP 98

Query: 110 ELKHQLPRPASLSAKDIQ-AXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVGGSDGL 169
           +LKHQLPRPASLSAKDIQ A                         WFDLPDL+V  S+G 
Sbjct: 99  QLKHQLPRPASLSAKDIQAAAAQAAALKHEPETATSCRGEEEESTWFDLPDLIV--SNGF 158

Query: 170 LLA---GYDS---------PWQFGGD--QQNSWHWDS-YSHTILP 199
           LL     Y S          WQF  D  + N + W S +SHTI P
Sbjct: 159 LLGLDENYSSSXXXXXXXXSWQFLVDDHEDNHFQWHSDFSHTIFP 201

[Close]

BLAST of Carg04979-RA vs. TrEMBL
Match: tr|A0A0A0KAN0|A0A0A0KAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G104640 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 94/173 (54.34%), Postives = 100/173 (57.80%), Query Frame = 0


Query: 50  TRKYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFP 109
           T K+RGVR RAWGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  AFLNFP
Sbjct: 44  TPKFRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFP 103

Query: 110 ELKHQLPRPASLSAKDIQ------AXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLVVG 169
           +LKHQLPRPASLSAKDIQ      A                         WFDLPDL+V 
Sbjct: 104 QLKHQLPRPASLSAKDIQAAAAQAAALKHEPETPTSCLEEGLEEEEEESTWFDLPDLIV- 163

Query: 170 GSDGLLLAGYDSPWQFGG------------------DQQNSWHWDSYSHTILP 199
            S+G LL G D  +                      D    WH D +SHTI P
Sbjct: 164 -SNGFLL-GLDENYSXXXXXXXXXXXXXXFLVDDHEDNHFQWHSD-FSHTIFP 212

[Close]

BLAST of Carg04979-RA vs. TrEMBL
Match: tr|B9T7D9|B9T7D9_RICCO (DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0236090 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 70/109 (64.22%), Postives = 74/109 (67.89%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R WGKWVSEIREPRKKSRIWLGTY TAEMAARAHDAAALAIKG  A LNFP+L 
Sbjct: 75  YRGVRMRQWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDAAALAIKGNSAHLNFPDLA 134

Query: 113 HQLPRPASLSAKDIQAXXXXXXXXXXXXXXXXXXXXXXXXXWFDLPDLV 162
           H+LPRPAS S KDIQA                         + DLPDL+
Sbjct: 135 HELPRPASASPKDIQAAAALAAALECKEGHESSLLTDEDDMFIDLPDLL 183

[Close]

BLAST of Carg04979-RA vs. TrEMBL
Match: tr|A0A1Q3DEW9|A0A1Q3DEW9_CEPFO (AP2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34255 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.6e-28
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 53  YRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPELK 112
           YRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD A LAIKG  A+LNFPE+ 
Sbjct: 76  YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVATLAIKGHSAYLNFPEIA 135

Query: 113 HQLPRPASLSAKDIQA 129
           HQLPRPAS S KDIQA
Sbjct: 136 HQLPRPASTSPKDIQA 151

[Close]

BLAST of Carg04979-RA vs. TrEMBL
Match: tr|A0A067JY82|A0A067JY82_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14613 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-28
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 52  KYRGVRRRAWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDAAALAIKGCGAFLNFPEL 111
           KYRGVR R+WGKWVSEIREPRKKSRIWLGTY TAEMAARAHD AALAIKG  A+LNFPEL
Sbjct: 81  KYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSAYLNFPEL 140

Query: 112 KHQLPRPASLSAKDIQA 129
            H+LPRP + S KDIQA
Sbjct: 141 VHELPRPVTKSPKDIQA 157

The following BLAST results are available for this feature:

BLAST of Carg04979-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004375.1	2.3e-63	97.99	ethylene-responsive transcription factor ERF039-like [Cucurbita maxima]	[more]
XP_022959732.1	8.9e-63	97.32	ethylene-responsive transcription factor ERF039-like [Cucurbita moschata]	[more]
XP_023515152.1	9.8e-62	97.99	ethylene-responsive transcription factor ERF039-like [Cucurbita pepo subsp. pepo...	[more]
XP_022959279.1	4.4e-38	59.26	ethylene-responsive transcription factor ERF039-like [Cucurbita moschata]	[more]
XP_022974292.1	9.9e-38	58.90	ethylene-responsive transcription factor ERF039-like [Cucurbita maxima]	[more]

BLAST of Carg04979-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60490.1	5.4e-30	82.89	Integrase-type DNA-binding superfamily protein	[more]
AT2G44940.1	2.1e-29	80.26	Integrase-type DNA-binding superfamily protein	[more]
AT1G77200.1	3.5e-29	80.26	Integrase-type DNA-binding superfamily protein	[more]
AT2G25820.1	1.0e-28	78.95	Integrase-type DNA-binding superfamily protein	[more]
AT4G16750.1	1.3e-28	80.00	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Carg04979-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M210\|ERF35_ARATH	9.7e-29	82.89	Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q8LBQ7\|ERF34_ARATH	3.7e-28	80.26	Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|O80654\|ERF37_ARATH	6.3e-28	80.26	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q52QU1\|ERF42_ARATH	1.8e-27	78.95	Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9SUK8\|ERF39_ARATH	2.4e-27	80.00	Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg04979-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CBH6\|A0A1S3CBH6_CUCME	4.7e-36	58.18	ethylene-responsive transcription factor ERF039-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0KAN0\|A0A0A0KAN0_CUCSA	3.4e-34	54.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G104640 PE=4 SV=1	[more]
tr\|B9T7D9\|B9T7D9_RICCO	2.1e-28	64.22	DNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0236090 PE=4 S...	[more]
tr\|A0A1Q3DEW9\|A0A1Q3DEW9_CEPFO	3.6e-28	84.21	AP2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_3425...	[more]
tr\|A0A067JY82\|A0A067JY82_JATCU	4.7e-28	83.12	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14613 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04979	Carg04979	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04979-RA.exon.1	Carg04979-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04979-RA.CDS.1	Carg04979-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04979-RA	Carg04979-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 75..91 score: 65.78 coord: 53..64 score: 70.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 52..115 e-value: 6.2E-35 score: 132.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 52..101 e-value: 6.9E-13 score: 48.5
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 52..109 score: 23.327
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 52..111 e-value: 4.59146E-19 score: 76.9267
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 51..111 e-value: 1.2E-29 score: 103.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..154
None	No IPR available	PANTHER	PTHR31985	FAMILY NOT NAMED	coord: 12..151
None	No IPR available	PANTHER	PTHR31985:SF77	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-RELATED	coord: 12..151
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 52..109