Carg04894-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04894-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glycine-rich protein
Location	Cucurbita_argyrosperma_scaffold_060 : 112235 .. 112636 (-)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGAGGACTTGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

mRNA sequence

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGAGGACTTGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

Coding sequence (CDS)

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTAGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTCGGTGGATTTGGAGGCGGTGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGAGGACTTGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

Protein sequence

MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAVGGTGPGGIGGGIGGLGGFGGGGGAGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGLGGGVGGGGGSGLP

Homology

[Close]

BLAST of Carg04894-RA vs. NCBI nr
Match: XP_022960398.1 (acanthoscurrin-1-like [Cucurbita moschata])

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG
Sbjct: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 54

[Close]

BLAST of Carg04894-RA vs. NCBI nr
Match: XP_023004890.1 (acanthoscurrin-1-like [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG
Sbjct: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 54

[Close]

BLAST of Carg04894-RA vs. NCBI nr
Match: XP_011659762.1 (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN44566.1 hypothetical protein Csa_7G336450 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-18
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFG
Sbjct: 1  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFG 54

[Close]

BLAST of Carg04894-RA vs. NCBI nr
Match: XP_023549421.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAKL MA+ LAL+ATHALARPTP DATF DQKNFLTYGG+G YSGIGSNGLPFG
Sbjct: 1  MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFG 54

[Close]

BLAST of Carg04894-RA vs. NCBI nr
Match: XP_008462124.1 (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 9.3e-16
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 6  MAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFG
Sbjct: 1  MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFG 49

[Close]

BLAST of Carg04894-RA vs. TAIR10
Match: AT4G29030.1 (Putative membrane lipoprotein)

HSP 1 Score: 43.9 bits (102), Expect = 9.0e-05
Identity = 29/57 (50.88%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHAL---ARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAK F  + L      AL   AR  P     +DQKN+L YG  GGYSG+G NGLPFG
Sbjct: 1  MAKWFFTIFLVFALASALACGARNVP--VGLSDQKNYLGYG--GGYSGVGDNGLPFG 53

[Close]

BLAST of Carg04894-RA vs. TrEMBL
Match: tr|A0A0A0K9U1|A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.0e-18
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFG
Sbjct: 1  MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFG 54

[Close]

BLAST of Carg04894-RA vs. TrEMBL
Match: tr|A0A1S3CGR1|A0A1S3CGR1_CUCME (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.2e-16
Identity = 44/49 (89.80%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 6  MAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFG
Sbjct: 1  MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFG 49

[Close]

BLAST of Carg04894-RA vs. TrEMBL
Match: tr|A0A1S3CFV5|A0A1S3CFV5_CUCME (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.1e-11
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIG 48
          MAKLFMA+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIG
Sbjct: 1  MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIG 47

[Close]

BLAST of Carg04894-RA vs. TrEMBL
Match: tr|A0A0A0K6P3|A0A0A0K6P3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGS 49
          MAKLF+A+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGS
Sbjct: 1  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGS 48

[Close]

BLAST of Carg04894-RA vs. TrEMBL
Match: tr|A0A2P5BRQ1|A0A2P5BRQ1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_216580 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MAKLFMAMLLALLATHALAR--PTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFG 55
          MAK  + ++LAL+  HA AR  P PKDA   DQKNFLTYGG+GGYSG+G+NGLPFG
Sbjct: 1  MAKWCVVLVLALVVVHATARNVPAPKDAGLNDQKNFLTYGGVGGYSGVGNNGLPFG 56

The following BLAST results are available for this feature:

BLAST of Carg04894-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960398.1	2.1e-20	100.00	acanthoscurrin-1-like [Cucurbita moschata]	[more]
XP_023004890.1	2.1e-20	100.00	acanthoscurrin-1-like [Cucurbita maxima]	[more]
XP_011659762.1	7.6e-18	88.89	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus] >KGN445...	[more]
XP_023549421.1	1.9e-16	85.19	glycine-rich protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_008462124.1	9.3e-16	89.80	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]

BLAST of Carg04894-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G29030.1	9.0e-05	50.88	Putative membrane lipoprotein	[more]

BLAST of Carg04894-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg04894-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9U1\|A0A0A0K9U1_CUCSA	5.0e-18	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336450 PE=4 SV=1	[more]
tr\|A0A1S3CGR1\|A0A1S3CGR1_CUCME	6.2e-16	89.80	acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1	[more]
tr\|A0A1S3CFV5\|A0A1S3CFV5_CUCME	2.1e-11	82.98	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0A0K6P3\|A0A0A0K6P3_CUCSA	2.7e-11	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1	[more]
tr\|A0A2P5BRQ1\|A0A2P5BRQ1_PARAD	2.3e-10	66.07	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_216580 PE...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04894	Carg04894	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04894-RA.CDS.1	Carg04894-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04894-RA.exon.1	Carg04894-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04894-RA	Carg04894-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463	FAMILY NOT NAMED	coord: 1..103
None	No IPR available	PANTHER	PTHR34463:SF1	GLYCINE-RICH PROTEIN LIKE	coord: 1..103