Carg04893-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg04893-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor PIF1
Location	Cucurbita_argyrosperma_scaffold_060 : 98559 .. 101954 (+)
Sequence length	2077

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTTCCCCTTCCCCAACAATTTTTCAGATTCTCCCAAACCCACCCATCTCTCCGAAAACCAATCAAGATTCCATTTCTATCCCCTATTTTTGTTCCTTGTTTTTGCGCAGACGCCGTTGTTGCGCTCACTCATCTCTTAGCTTCATGGTGTTCGTCCATGGAGGATTGATTTTTTCTCTGTGTATAGTTCTCTCCTTTTCTTCTTCGTTTGTTCTCGATTTGGGTTCTCGGTGGATTGAAGCTTGGAAGTTGAAACTCCTTTGATTTTTGTTTCCTCCAGGTTATTGATGATCGGAAGATTGAGGATGAACCACTGCGTTCCTGATTTTGAAATGGCTGACGATTTCTCCCTCCCAACATTCTCTAGTTTAACCAGGCCGAGAAAATCGTCTATGTAAGCTTTGTTTGAAGATATTGTTGTTGAAATTTTTTCTGGGTTTTGATTTTGATTTTGTTTTGTGGACTGAGAGCTTTTAACTCGCAGGCCGGACGATGATGTAGTGGAGCTTCTATGGCAGAACGGCCAAGTGGTGGCTCACAGCCAGAACCAGAGGTCGGTCCGGAAATCACCGCCCTCCAAATTCGATGTTTCGATTCCGCAAGATCAAACGGCGGCGGTGGCGACTAGAGAGATCCGGCCTTCGTCTCAATTGGAGGAACCTCATGACCTTTTTATGCAAGAAGATGAAATGGCCTCGTGGCTCAACTATCCTCTCGTTGAGGATCATAATTTCTGCTCCGACCTCCTCTTCCCCTCCATAACTGCTTCTCTTTGCGGCAATTCTCAAACCGAGCCCCGGCCATCCGCTACGGCGACGGTCACTCTCACGCAGGGGCCGCCAACTCGACCGGAAAAGCAGAGCTCCGTGCAGTTCTCGAGGAACAGAGCGACGGTCGAATCGGAACCGTCGAATTCAAAGGCTATGGTGCGGGAAGCCACTGTGGTGGATTCTTGCGACACGCCGTCTGTCGGGCCGGAATCTAGGGCTTCAGAAATCGCGAGGAGAAAGCTTGTGGAGGCGGTGAATGGTGCCGATGTATGGCGTGAGACGGTTTGTGGTAGTGATGGAGGCGGAGGTGCGTCGGTCAGCGGCGATGGCGTCGGGGAGAAAGAGTTGGTGACTTGTGAAATGACTGTCACTTCATCCCCTGGCGGCTCGAGTGCCAGTGCCGAGCCTGCTGCCCCAAAACTGGCTGCCGATGACCGAAAGCGCAAAGGAAGAGCTCCCGATGATACCGAATGCCAAAGCGAGGTAAGCATCTTCTCTTTGTTTATCTTTAGCATGAAACAATTTAGTATGGAATCCAACCATGAATCTTTTTGAAGCTCAAACTACAAAAGATTGAATCCTCAATTGAAGGAGCAAACGGGAACTTTAAAACGGTTTGAAACAGGTTGAACAATGGCCACTAAAAGCCCCACAGATGATTGCTGACTGCTTTGTTTTGGGCAAACTAAGAGATTTGTATATCTGTTTTTGCAATTCTTGGGTGATTTGCTAATGTTCTTTGCCATTAGGATGTTGAGTACGAATCCACTGATCCGAAGAAACAATTGCGTGGTTCGACATCGATGAAAAGATCTCGTGCTGCTGAGGTTCACAACCTCTCAGAGAGGGTGCGAAATTGAATTTATTACTAATTGTATGGTTGTAAACAAGCAAATGTACCTTCTATGGTAGTGTTGTTTTCTTCTTGGAGGTGAAGTGAAATATTGCAAATCTATTTGCAGAGACGTCGGGATCGGATAAATGAGAAGATGAAGGCTTTACAGGAACTCATCCCTCGATGCAACAAGGTTTGTTTTCAGCTTCAATGTGATTCTGAGTAGAGGTTTCTCTGTTTCTCATATCCGAACTTGTGTTGAGTTCCTTTACTGATTTGCAGACCGATAAGGCTTCGATGTTGGATGAAGCGATCGAGTACTTAAAGACCCTTCAGTTGCAAGTGCAGGTACATGCTTTGAATTCCATTCTTAATCGTTCCATAAAAGTGCAAGTCTAAACTGAATCATGGTAGAAGGAAATGTATGAATTAGTAACAGATTCTATTTAACCAATTGTTTAGAAGGAAATAGTCAATACTTTACATATAAAACAGTTGATATCATTGAACAATTAGGGAATGAAACATATCTTTGATTCTGCCTGCTGTGATCTCATTGTAAATCTTCTGCATAAACATACACAACAAGGCATACTTGAACGTGATCGGCTGATGCATCTTGTTAACGTTGGGAATGACTATTTATAACCCAGATGATGTCGATGGGATGTGGAATGATGCCGATGATGTTCCCGGGCGTTCAACAATACTTGCCACCACCGATGGGGATGGGAATCGGGATGGGCATGGGTATGGGAATGGAAATGGGCATGAATAGACCAATGATGCAATTTCCTAATCTCCTGGCTGGCTCAAACTTACCAATGCAAGCTGGAGCAGCAGCAGCAGCAGCTCATTTGGGACAGAGATTCCCTCTCCCTGCCTTTGCAATGCCTCCTGTTCCCGGTAGCAATCCATCCCAAGCTCAAGCAATGAATAATCAACCGGATCCGATCGTTAACCCAGCTGGAACACAAAATACAGCCCCGCCTCCAGTCTCAGGTTTTCCTGATTCTTATCAGCAGTTTCTTAGCTCCAACCAGGTGCAGTTTCATATCGCACAGGCTGTTCAGGTATCATTTTTTGACAGTCACCTTCATTTTGTATACAAATTCAGCATGTTTCTAAAGTTGGTTGGCATCAAAATTTCAACCAAATGCCACTGTCAACCTTGCGAATCCGAACCGACGAGTTAATTTTCAACCTTTTACAGAATCAGCAACCAGTTCAGCCTAATACAAGCAGGCCATGTACTGACAGGAATCCCAAAAATCTCTAAAATCATCAATCAGGTAAGCCTCTTCCTTTATCTTTTGGGATGTTCATGATATTCATCGGTTGTATGATACTTCGTTCGTTGATTAGTTGAAACATTATTGTTATATTACCTTAAGATCCAAAATAAGTTCCATTCACGTTGCTATTTATAAAGTTTTCGCGTATTTTAGGTTAATATTGAATGTTTGGACTCGAGAAACCTGCTTGCTGGGCAAGATTTGCACATATTAGAGTGTCGAAAGCTTCGAACATGTGCATCCGCTGCTTGCAAGTATGATATATGTCACAAATAACATGTAATGACCGTGACCCTGTAAACACAAGTCTGTACTTCTCTTGCGTTATTCTATCTTTTAAACAATCGTTGCCCTTTTCCTGACTTGTTATTCTGCTAGATTGTGATAGAAAGAAAGTTGAGTTACAGATGGTCACTACACGAAACTGTCGTGTTGCATTTCATTCGGCTCGGGTCCAGGGCGTTGATGCTGATAGATCCAACTTGGTGTGGTAA

mRNA sequence

GCCTTTCCCCTTCCCCAACAATTTTTCAGATTCTCCCAAACCCACCCATCTCTCCGAAAACCAATCAAGATTCCATTTCTATCCCCTATTTTTGTTCCTTGTTTTTGCGCAGACGCCGTTGTTGCGCTCACTCATCTCTTAGCTTCATGGTGTTCGTCCATGGAGGATTGATTTTTTCTCTGTGTTATTGATGATCGGAAGATTGAGGATGAACCACTGCGTTCCTGATTTTGAAATGGCTGACGATTTCTCCCTCCCAACATTCTCTAGTTTAACCAGGCCGAGAAAATCGTCTATGCCGGACGATGATGTAGTGGAGCTTCTATGGCAGAACGGCCAAGTGGTGGCTCACAGCCAGAACCAGAGGTCGGTCCGGAAATCACCGCCCTCCAAATTCGATGTTTCGATTCCGCAAGATCAAACGGCGGCGGTGGCGACTAGAGAGATCCGGCCTTCGTCTCAATTGGAGGAACCTCATGACCTTTTTATGCAAGAAGATGAAATGGCCTCGTGGCTCAACTATCCTCTCGTTGAGGATCATAATTTCTGCTCCGACCTCCTCTTCCCCTCCATAACTGCTTCTCTTTGCGGCAATTCTCAAACCGAGCCCCGGCCATCCGCTACGGCGACGGTCACTCTCACGCAGGGGCCGCCAACTCGACCGGAAAAGCAGAGCTCCGTGCAGTTCTCGAGGAACAGAGCGACGGTCGAATCGGAACCGTCGAATTCAAAGGCTATGGTGCGGGAAGCCACTGTGGTGGATTCTTGCGACACGCCGTCTGTCGGGCCGGAATCTAGGGCTTCAGAAATCGCGAGGAGAAAGCTTGTGGAGGCGGTGAATGGTGCCGATGTATGGCGTGAGACGGTTTGTGGTAGTGATGGAGGCGGAGGTGCGTCGGTCAGCGGCGATGGCGTCGGGGAGAAAGAGTTGGTGACTTGTGAAATGACTGTCACTTCATCCCCTGGCGGCTCGAGTGCCAGTGCCGAGCCTGCTGCCCCAAAACTGGCTGCCGATGACCGAAAGCGCAAAGGAAGAGCTCCCGATGATACCGAATGCCAAAGCGAGGATGTTGAGTACGAATCCACTGATCCGAAGAAACAATTGCGTGGTTCGACATCGATGAAAAGATCTCGTGCTGCTGAGGTTCACAACCTCTCAGAGAGGAGACGTCGGGATCGGATAAATGAGAAGATGAAGGCTTTACAGGAACTCATCCCTCGATGCAACAAGACCGATAAGGCTTCGATGTTGGATGAAGCGATCGAGTACTTAAAGACCCTTCAGTTGCAAGTGCAGATGATGTCGATGGGATGTGGAATGATGCCGATGATGTTCCCGGGCGTTCAACAATACTTGCCACCACCGATGGGGATGGGAATCGGGATGGGCATGGGTATGGGAATGGAAATGGGCATGAATAGACCAATGATGCAATTTCCTAATCTCCTGGCTGGCTCAAACTTACCAATGCAAGCTGGAGCAGCAGCAGCAGCAGCTCATTTGGGACAGAGATTCCCTCTCCCTGCCTTTGCAATGCCTCCTGTTCCCGGTAGCAATCCATCCCAAGCTCAAGCAATGAATAATCAACCGGATCCGATCGTTAACCCAGCTGGAACACAAAATACAGCCCCGCCTCCAGTCTCAGGTTTTCCTGATTCTTATCAGCAGTTTCTTAGCTCCAACCAGGTGCAGTTTCATATCGCACAGGCTGTTCAGCATGTTTCTAAAGTTGGTTGGCATCAAAATTTCAACCAAATGCCACTGTCAACCTTGCGAATCCGAACCGACGAAATCAGCAACCAGTTCAGCCTAATACAAGCAGGCCATGTACTGACAGGAATCCCAAAAATCTCTAAAATCATCAATCAGGTTAATATTGAATGTTTGGACTCGAGAAACCTGCTTGCTGGGCAAGATTTGCACATATTAGAGTGTCGAAAGCTTCGAACATGTGCATCCGCTGCTTGCAAAAAGAAAGTTGAGTTACAGATGGTCACTACACGAAACTGTCGTGTTGCATTTCATTCGGCTCGGGTCCAGGGCGTTGATGCTGATAGATCCAACTTGGTGTGGTAA

Coding sequence (CDS)

ATGATCGGAAGATTGAGGATGAACCACTGCGTTCCTGATTTTGAAATGGCTGACGATTTCTCCCTCCCAACATTCTCTAGTTTAACCAGGCCGAGAAAATCGTCTATGCCGGACGATGATGTAGTGGAGCTTCTATGGCAGAACGGCCAAGTGGTGGCTCACAGCCAGAACCAGAGGTCGGTCCGGAAATCACCGCCCTCCAAATTCGATGTTTCGATTCCGCAAGATCAAACGGCGGCGGTGGCGACTAGAGAGATCCGGCCTTCGTCTCAATTGGAGGAACCTCATGACCTTTTTATGCAAGAAGATGAAATGGCCTCGTGGCTCAACTATCCTCTCGTTGAGGATCATAATTTCTGCTCCGACCTCCTCTTCCCCTCCATAACTGCTTCTCTTTGCGGCAATTCTCAAACCGAGCCCCGGCCATCCGCTACGGCGACGGTCACTCTCACGCAGGGGCCGCCAACTCGACCGGAAAAGCAGAGCTCCGTGCAGTTCTCGAGGAACAGAGCGACGGTCGAATCGGAACCGTCGAATTCAAAGGCTATGGTGCGGGAAGCCACTGTGGTGGATTCTTGCGACACGCCGTCTGTCGGGCCGGAATCTAGGGCTTCAGAAATCGCGAGGAGAAAGCTTGTGGAGGCGGTGAATGGTGCCGATGTATGGCGTGAGACGGTTTGTGGTAGTGATGGAGGCGGAGGTGCGTCGGTCAGCGGCGATGGCGTCGGGGAGAAAGAGTTGGTGACTTGTGAAATGACTGTCACTTCATCCCCTGGCGGCTCGAGTGCCAGTGCCGAGCCTGCTGCCCCAAAACTGGCTGCCGATGACCGAAAGCGCAAAGGAAGAGCTCCCGATGATACCGAATGCCAAAGCGAGGATGTTGAGTACGAATCCACTGATCCGAAGAAACAATTGCGTGGTTCGACATCGATGAAAAGATCTCGTGCTGCTGAGGTTCACAACCTCTCAGAGAGGAGACGTCGGGATCGGATAAATGAGAAGATGAAGGCTTTACAGGAACTCATCCCTCGATGCAACAAGACCGATAAGGCTTCGATGTTGGATGAAGCGATCGAGTACTTAAAGACCCTTCAGTTGCAAGTGCAGATGATGTCGATGGGATGTGGAATGATGCCGATGATGTTCCCGGGCGTTCAACAATACTTGCCACCACCGATGGGGATGGGAATCGGGATGGGCATGGGTATGGGAATGGAAATGGGCATGAATAGACCAATGATGCAATTTCCTAATCTCCTGGCTGGCTCAAACTTACCAATGCAAGCTGGAGCAGCAGCAGCAGCAGCTCATTTGGGACAGAGATTCCCTCTCCCTGCCTTTGCAATGCCTCCTGTTCCCGGTAGCAATCCATCCCAAGCTCAAGCAATGAATAATCAACCGGATCCGATCGTTAACCCAGCTGGAACACAAAATACAGCCCCGCCTCCAGTCTCAGGTTTTCCTGATTCTTATCAGCAGTTTCTTAGCTCCAACCAGGTGCAGTTTCATATCGCACAGGCTGTTCAGCATGTTTCTAAAGTTGGTTGGCATCAAAATTTCAACCAAATGCCACTGTCAACCTTGCGAATCCGAACCGACGAAATCAGCAACCAGTTCAGCCTAATACAAGCAGGCCATGTACTGACAGGAATCCCAAAAATCTCTAAAATCATCAATCAGGTTAATATTGAATGTTTGGACTCGAGAAACCTGCTTGCTGGGCAAGATTTGCACATATTAGAGTGTCGAAAGCTTCGAACATGTGCATCCGCTGCTTGCAAAAAGAAAGTTGAGTTACAGATGGTCACTACACGAAACTGTCGTGTTGCATTTCATTCGGCTCGGGTCCAGGGCGTTGATGCTGATAGATCCAACTTGGTGTGGTAA

Protein sequence

MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNSKAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPPMGMGIGMGMGMGMEMGMNRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKVGWHQNFNQMPLSTLRIRTDEISNQFSLIQAGHVLTGIPKISKIINQVNIECLDSRNLLAGQDLHILECRKLRTCASAACKKKVELQMVTTRNCRVAFHSARVQGVDADRSNLVW

Homology

[Close]

BLAST of Carg04893-RA vs. NCBI nr
Match: XP_022960182.1 (transcription factor PIF1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 934.5 bits (2414), Expect = 1.9e-268
Identity = 505/514 (98.25%), Postives = 508/514 (98.83%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           M+GRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS
Sbjct: 1   MLGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180
           SDLLFPS+TASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS
Sbjct: 121 SDLLFPSMTASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180

Query: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240
           KAMVREATVVDSCDTPSVGPESRASEIARRKL EAVNGADVWRETVCGSDGGGGASVSGD
Sbjct: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLAEAVNGADVWRETVCGSDGGGGASVSGD 240

Query: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300
           GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD
Sbjct: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300

Query: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360
           PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY
Sbjct: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360

Query: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420
           LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL
Sbjct: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420

Query: 421 AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTA 480
           AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPV GSNPSQAQAMNNQPDPIVNPAGTQNT 
Sbjct: 421 AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVTGSNPSQAQAMNNQPDPIVNPAGTQNTT 480

Query: 481 PPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKV 515
           PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ+   V
Sbjct: 481 PPPVSGFPDSYQQFLSSNQVQFHIAQAVQNQQPV 514

[Close]

BLAST of Carg04893-RA vs. NCBI nr
Match: XP_022960179.1 (transcription factor PIF1-like isoform X1 [Cucurbita moschata] >XP_022960180.1 transcription factor PIF1-like isoform X1 [Cucurbita moschata] >XP_022960181.1 transcription factor PIF1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 934.1 bits (2413), Expect = 2.5e-268
Identity = 508/520 (97.69%), Postives = 511/520 (98.27%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           M+GRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS
Sbjct: 1   MLGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180
           SDLLFPS+TASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS
Sbjct: 121 SDLLFPSMTASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180

Query: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240
           KAMVREATVVDSCDTPSVGPESRASEIARRKL EAVNGADVWRETVCGSDGGGGASVSGD
Sbjct: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLAEAVNGADVWRETVCGSDGGGGASVSGD 240

Query: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300
           GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD
Sbjct: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300

Query: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360
           PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY
Sbjct: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360

Query: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420
           LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL
Sbjct: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420

Query: 421 AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTA 480
           AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPV GSNPSQAQAMNNQPDPIVNPAGTQNT 
Sbjct: 421 AGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVTGSNPSQAQAMNNQPDPIVNPAGTQNTT 480

Query: 481 PPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKVGWHQNF 521
           PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ VS    H +F
Sbjct: 481 PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ-VSFFDSHLHF 519

[Close]

BLAST of Carg04893-RA vs. NCBI nr
Match: XP_023514409.1 (transcription factor PIF1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514410.1 transcription factor PIF1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514411.1 transcription factor PIF1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023514412.1 transcription factor PIF1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 928.3 bits (2398), Expect = 1.4e-266
Identity = 508/521 (97.50%), Postives = 510/521 (97.89%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS
Sbjct: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           VRKSPPSKFDVSIPQDQTAAVA REIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  VRKSPPSKFDVSIPQDQTAAVAAREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180
           SDLLFPS+TASLCGNSQTEPRPSATATVTLTQGPPTR EKQSSVQFSRNRATVESEPSNS
Sbjct: 121 SDLLFPSMTASLCGNSQTEPRPSATATVTLTQGPPTRLEKQSSVQFSRNRATVESEPSNS 180

Query: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240
           KAMVREATVVDSCDTPSVGPESRASEIARRKL EAVNGADVWRETVCGSDGGGGASVSGD
Sbjct: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLAEAVNGADVWRETVCGSDGGGGASVSGD 240

Query: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300
           GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD
Sbjct: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300

Query: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360
           PKKQLRGSTSMKRSRAAEVHNLSERR RDRINEKMKALQELIPRCNKTDKASMLDEAIEY
Sbjct: 301 PKKQLRGSTSMKRSRAAEVHNLSERRHRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360

Query: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420
           LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL
Sbjct: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420

Query: 421 AGSNLPMQAG-AAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT 480
           AGSNLPMQAG AAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT
Sbjct: 421 AGSNLPMQAGAAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT 480

Query: 481 APPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKVGWHQNF 521
            PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ VS  G H +F
Sbjct: 481 TPPPVSGFPDSYQQFLSSNQVQFHIAQAVQ-VSFFGSHLHF 520

[Close]

BLAST of Carg04893-RA vs. NCBI nr
Match: XP_023514413.1 (transcription factor PIF1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 926.0 bits (2392), Expect = 6.8e-266
Identity = 504/515 (97.86%), Postives = 506/515 (98.25%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS
Sbjct: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           VRKSPPSKFDVSIPQDQTAAVA REIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  VRKSPPSKFDVSIPQDQTAAVAAREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180
           SDLLFPS+TASLCGNSQTEPRPSATATVTLTQGPPTR EKQSSVQFSRNRATVESEPSNS
Sbjct: 121 SDLLFPSMTASLCGNSQTEPRPSATATVTLTQGPPTRLEKQSSVQFSRNRATVESEPSNS 180

Query: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240
           KAMVREATVVDSCDTPSVGPESRASEIARRKL EAVNGADVWRETVCGSDGGGGASVSGD
Sbjct: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLAEAVNGADVWRETVCGSDGGGGASVSGD 240

Query: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300
           GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD
Sbjct: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300

Query: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360
           PKKQLRGSTSMKRSRAAEVHNLSERR RDRINEKMKALQELIPRCNKTDKASMLDEAIEY
Sbjct: 301 PKKQLRGSTSMKRSRAAEVHNLSERRHRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360

Query: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420
           LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL
Sbjct: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420

Query: 421 AGSNLPMQAG-AAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT 480
           AGSNLPMQAG AAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT
Sbjct: 421 AGSNLPMQAGAAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT 480

Query: 481 APPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKV 515
            PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ+   V
Sbjct: 481 TPPPVSGFPDSYQQFLSSNQVQFHIAQAVQNQQPV 515

[Close]

BLAST of Carg04893-RA vs. NCBI nr
Match: XP_023004992.1 (transcription factor PIF1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 919.1 bits (2374), Expect = 8.3e-264
Identity = 501/515 (97.28%), Postives = 504/515 (97.86%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS
Sbjct: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRPEKQSSVQFSRNRATVESEPSNS 180
           SDLLFPS+TASLCGNS TEPRPSATATVTLTQGPPTR EKQSSVQFSRNRAT ESEPSNS
Sbjct: 121 SDLLFPSMTASLCGNSLTEPRPSATATVTLTQGPPTRLEKQSSVQFSRNRATGESEPSNS 180

Query: 181 KAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240
           KAMVREATVVDSCDTPSVGPESRAS IARRKLVEAVNGADVWRETVCGSDGGGGASVSGD
Sbjct: 181 KAMVREATVVDSCDTPSVGPESRASVIARRKLVEAVNGADVWRETVCGSDGGGGASVSGD 240

Query: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300
           GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD
Sbjct: 241 GVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTD 300

Query: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360
           PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY
Sbjct: 301 PKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEY 360

Query: 361 LKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLL 420
           LKTLQLQVQMMSMGCGMMPMMFPG+QQYLPPXXXXXXXXXXXXXXXXXXX PMMQFPNLL
Sbjct: 361 LKTLQLQVQMMSMGCGMMPMMFPGIQQYLPPXXXXXXXXXXXXXXXXXXXXPMMQFPNLL 420

Query: 421 AGSNLPMQAG-AAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNT 480
           AGSNLPMQAG AAAAAAHLGQRFPLPAFAMPPVPG NPSQAQAMNNQPDPIVNPAGTQNT
Sbjct: 421 AGSNLPMQAGAAAAAAAHLGQRFPLPAFAMPPVPGGNPSQAQAMNNQPDPIVNPAGTQNT 480

Query: 481 APPPVSGFPDSYQQFLSSNQVQFHIAQAVQHVSKV 515
            PPPVSGFPDSYQQFLSSNQVQFHIAQAVQ+   V
Sbjct: 481 TPPPVSGFPDSYQQFLSSNQVQFHIAQAVQNQQPV 515

[Close]

BLAST of Carg04893-RA vs. TAIR10
Match: AT2G20180.2 (phytochrome interacting factor 3-like 5)

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-51
Identity = 189/519 (36.42%), Postives = 239/519 (46.05%), Query Frame = 0


Query: 7   MNHCVPDFEMADDFSLPTFSSLTR-PRKSSM---PDDDVVELLWQNGQVVAHSQNQRSVR 66
           M+H VPDF+  DD+     SSL   PRKS      DDD++ELLWQNGQVV   QNQR   
Sbjct: 1   MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVV--QNQRLHT 60

Query: 67  KSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFCSD 126
           K P S     +P           + P  Q     +LF+QEDEM SWL+YPL  D +FCSD
Sbjct: 61  KKPSSSPPKLLP----------SMDPQQQPSSDQNLFIQEDEMTSWLHYPL-RDDDFCSD 120

Query: 127 LLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRP----------EKQSSVQFSRNRAT 186
           LLF +              P+ATAT T++Q    RP            ++ + FSR R  
Sbjct: 121 LLFSA-------------APTATATATVSQVTAARPPXXXXXXXXXXXRNFMNFSRLRGD 180

Query: 187 V------ESEPSNSKAMVREATVVDSCDTPSVGPESRASE--IARRKLVEAVNGADVWRE 246
                  ES P  SKA+VRE+T V    +PS  P + ASE  + RR              
Sbjct: 181 FNNGRGGESGPLLSKAVVRESTQV----SPSATPSAAASESGLTRR-------------- 240

Query: 247 TVCGSDGGGGASVSGDGVGEKELVTCEMTVTS-SPGGSSASAEPAAPKLAADDRKRKGRA 306
               +DG   ++V+G G   ++     MT  +                            
Sbjct: 241 ----TDGTDSSAVAGGGAYNRKGKAVAMTAPAIEXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 307 PDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIP 366
                                              VHNLSER+RRDRINE+MKALQELIP
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNLSERKRRDRINERMKALQELIP 360

Query: 367 RCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXX 426
           RCNK+DKASMLDEAIEY+K+LQLQ+QMMSMGCGMMPMM+PG+QQY+P             
Sbjct: 361 RCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMP------HMAMGMG 420

Query: 427 XXXXXXXRPMMQFPNLLAGSN-LPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQA 486
                     M FPN+LA    LP Q   A +    G ++P+ A        S+PS+   
Sbjct: 421 MNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGS----GPQYPVHA--------SDPSRVFV 446

Query: 487 MNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQ 502
            N Q DP        +  P   +G+ D YQQF   +  Q
Sbjct: 481 PNQQYDP-------TSGQPQYPAGYTDPYQQFRGLHPTQ 446

[Close]

BLAST of Carg04893-RA vs. TAIR10
Match: AT4G28811.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-39
Identity = 167/499 (33.47%), Postives = 239/499 (47.90%), Query Frame = 0


Query: 24  TFSSLTRPRKS-SMP--------DDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIP 83
           T +  T P+ S S+P        +DDVVELLW++GQVV   Q QR +   PP  F     
Sbjct: 85  TSTPATHPQSSVSLPXXXXXAPSEDDVVELLWKSGQVVQSIQTQRPI---PPPIF----- 144

Query: 84  QDQTAAVATREIRPSSQLEEPH-DLFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLC 143
           +   +      + P   L   H ++F+QEDEMASWL +PL +D+ F S +   S T    
Sbjct: 145 RGSGSGGGEETVLPLPPLHPSHQNIFIQEDEMASWLYHPLRQDY-FSSGVASTSAT---- 204

Query: 144 GNSQTEPRPSATATVTLTQGPPTRPEKQSSVQ--------FSRNRATVESEPS-NSKAMV 203
                  RP ++A++  T  PP+ P  Q  V+        F R R  + S     +  +V
Sbjct: 205 -------RPQSSASLAPTPPPPSVPYGQIPVERRTENFMNFLRLRGNIFSGGRVEAGPVV 264

Query: 204 REATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGE 263
            E+T + S  TPS       S  A   ++ A +G +     + G       +V G G   
Sbjct: 265 IESTQIGSSATPS-------SSAAESCVIPATHGTESRAAAITGV--SRTFAVPGLGRRG 324

Query: 264 KELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQ 323
           KE+ T E   TS  G + A  E    +      +R+ +  +D + +    E + T+   +
Sbjct: 325 KEVAT-ETAGTSYSGVNKAETERVQIQ-----PERETKITEDKKREETIAEIQGTE---E 384

Query: 324 LRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTL 383
             GSTS KRSRAA++HNLSERRRR+RINE+MK LQEL+PRC KTDK SML++ IEY+K+L
Sbjct: 385 AHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSL 444

Query: 384 QLQVQMMSMGCGMM-PMMFPG-VQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAG 443
           QLQ+QMMSMG GMM PMM  G  QQ++P                     P + FP    G
Sbjct: 445 QLQIQMMSMGHGMMPPMMHEGNTQQFMP--------HMAMGMKGMNRPPPFVPFP----G 504

Query: 444 SNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPP 502
              P     A     +G  +P   +  P    S+ S+    +   +P+ N         P
Sbjct: 505 KTFPRPGHMAG----VGPSYPALRYPFPDTQASDLSRVHVPSLHSNPVPN--------QP 521

[Close]

BLAST of Carg04893-RA vs. TAIR10
Match: AT4G28800.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-36
Identity = 155/471 (32.91%), Postives = 224/471 (47.56%), Query Frame = 0


Query: 38  DDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHD 97
           +DD+VELLWQ+GQVV  +Q  R     PP        + +  A  +   +P   L +  +
Sbjct: 19  EDDIVELLWQSGQVVGTNQTHRQSYDPPPILRGSGSGRGEENAPLS---QPPPHLHQ-QN 78

Query: 98  LFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTR 157
           LF+QE EM SWL++   +++ FCS+LL          NS     P ++ ++   Q   TR
Sbjct: 79  LFIQEGEMYSWLHHSYRQNY-FCSELL----------NSTPATHPQSSISLAPRQTIATR 138

Query: 158 PEKQSSVQFSRNRATV-----ESEPSNSKAMVREATVVDSCDTPSVGPESRASEIARRKL 217
              ++ + FS  R  +       E   S ++VRE+  V S  TP   P S A+E     +
Sbjct: 139 -RAENFMNFSWLRGNIFTGGRVDEAGPSFSVVRESMQVGSNTTP---PSSSATESC---V 198

Query: 218 VEAVNGADVWRETVCGSDGGGGASVSGDGVGEK-ELVTCEMTVTSSPGGSSASAEPAAPK 277
           + A  G       V G       +++   +G K + V  E   T S G   A  EP   +
Sbjct: 199 IPATEGT---ASRVSG-------TLAAHDLGRKGKAVAVEAAGTPSSGVCKAETEPVQIQ 258

Query: 278 LAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRI 337
             A + K K R              E T   ++ RGSTS KRSR AE+HNL+ERRRR++I
Sbjct: 259 -PATESKLKAR--------------EETHGTEEARGSTSRKRSRTAEMHNLAERRRREKI 318

Query: 338 NEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPG-VQQYLP 397
           NEKMK LQ+LIPRCNK+ K S LD+AIEY+K+LQ Q+Q M     M PMM  G  QQ++P
Sbjct: 319 NEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM-----MSPMMNAGNTQQFMP 378

Query: 398 PXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMP 457
                                P + FP    G++ PM A  A     +G  +P P +  P
Sbjct: 379 -----------HMAMDMNRPPPFIPFP----GTSFPMPAQMAG----VGPSYPAPRYPFP 410

Query: 458 PVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQ 502
            +   +PS+ +  + QP+P+ N         P    + + Y QF   +Q+Q
Sbjct: 439 NIQTFDPSRVRLPSPQPNPVSN--------QPQFPAYMNPYSQFAGPHQLQ 410

[Close]

BLAST of Carg04893-RA vs. TAIR10
Match: AT4G28790.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 4.8e-32
Identity = 134/377 (35.54%), Postives = 184/377 (48.81%), Query Frame = 0


Query: 28  LTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIR 87
           L  P K  M +DD+VELL ++ QVV  SQ Q +    PP    +                
Sbjct: 14  LISPEKYIMGEDDIVELLGKSSQVVTSSQTQ-TPSCDPP--LILRGXXXXXXXXXXXXXX 73

Query: 88  PSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGN-SQTEPRPSATA 147
               L     LF+QEDEMASWL+ P  +D+ + S LL+  + ++   + +  EP P   A
Sbjct: 74  XXXXLYHQQSLFIQEDEMASWLHQPNRQDYLY-SQLLYSGVASTHPQSLASLEPPPPPRA 133

Query: 148 TVTLTQGPPT-----RPEKQSSVQFSRNRAT-----VESEPSNSKAMVREATVVDSCDTP 207
              L    PT         ++ +  SR R       VE+ PSNS  +      + +    
Sbjct: 134 QYILAADRPTGHILAERRAENFMNISRQRGNIFLGGVEAVPSNSTLLSSATESIPA---- 193

Query: 208 SVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTS 267
           + G ESRA+         AV G            G  G +V+ +  G +    C+     
Sbjct: 194 THGTESRATVTGGVSRTFAVPGL-----------GPRGKAVAIETAGTQSWGLCKAET-- 253

Query: 268 SPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRA 327
                    +PA      D+RKRK R       +  +VE + T+   + R STS KRSRA
Sbjct: 254 ----EPVQRQPATETDITDERKRKTR-------EETNVENQGTE---EARDSTSSKRSRA 313

Query: 328 AEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCG 387
           A +H LSERRRR +INE MKALQEL+PRC KTD++SMLD+ IEY+K+LQ Q+QM SMG  
Sbjct: 314 AIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGHV 355

Query: 388 MM-PMMFPG--VQQYLP 391
           M+ PMM+ G   QQY+P
Sbjct: 374 MIPPMMYAGNIQQQYMP 355

[Close]

BLAST of Carg04893-RA vs. TAIR10
Match: AT1G09530.1 (phytochrome interacting factor 3)

HSP 1 Score: 114.0 bits (284), Expect = 3.3e-25
Identity = 134/415 (32.29%), Postives = 176/415 (42.41%), Query Frame = 0


Query: 32  RKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIRPSSQ 91
           R  S P D+VVEL+W+NGQ+   SQ+ RS           +IP  Q  +   REI   S+
Sbjct: 20  RNPSPPVDEVVELVWENGQISTQSQSSRS----------RNIPPPQANSSRAREIGNGSK 79

Query: 92  LEEPHDLFM----------QEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGNSQTEPR 151
                ++ M          Q+D+   WLN+    D  +CSD L   +++ +  N Q    
Sbjct: 80  TTMVDEIPMSVPSLMTGLSQDDDFVPWLNHHPSLD-GYCSDFL-RDVSSPVTVNEQESDM 139

Query: 152 PSATATVTLTQ----GPPTRPEKQS---------------------SVQFSRNRATVESE 211
                   L Q    G  + P   S                     S Q + +R T   E
Sbjct: 140 AVNQTAFPLFQRRKDGNESAPAASSSQYNGFQSHSLYGSDRARDLPSQQTNPDRFTQTQE 199

Query: 212 P---SNSKAMV------REATVVDSC-----DTPSVGPESRASEIARRKLVEAVNGADVW 271
           P   SN  ++V      R AT   +      DT    P+S  +    R L    +   V 
Sbjct: 200 PLITSNKPSLVNFSHFLRPATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSEDKVL 259

Query: 272 RETVCGS---DGGGGASVSGDGVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKR 331
            E+V  +   D      +S D   + +     +  +S   G+S      +P L+    KR
Sbjct: 260 NESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSLSL---KR 319

Query: 332 KGRAPDDTECQS---EDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMK 391
           K     D +C S                          R+AEVHNLSERRRRDRINEKM+
Sbjct: 320 KHSNIQDIDCHSXXXXXXXXXXXXXXXXXXXXXXXXXXRSAEVHNLSERRRRDRINEKMR 379

[Close]

BLAST of Carg04893-RA vs. Swiss-Prot
Match: sp|Q8GZM7|PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-50
Identity = 189/519 (36.42%), Postives = 239/519 (46.05%), Query Frame = 0


Query: 7   MNHCVPDFEMADDFSLPTFSSLTR-PRKSSM---PDDDVVELLWQNGQVVAHSQNQRSVR 66
           M+H VPDF+  DD+     SSL   PRKS      DDD++ELLWQNGQVV   QNQR   
Sbjct: 1   MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVV--QNQRLHT 60

Query: 67  KSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFCSD 126
           K P S     +P           + P  Q     +LF+QEDEM SWL+YPL  D +FCSD
Sbjct: 61  KKPSSSPPKLLP----------SMDPQQQPSSDQNLFIQEDEMTSWLHYPL-RDDDFCSD 120

Query: 127 LLFPSITASLCGNSQTEPRPSATATVTLTQGPPTRP----------EKQSSVQFSRNRAT 186
           LLF +              P+ATAT T++Q    RP            ++ + FSR R  
Sbjct: 121 LLFSA-------------APTATATATVSQVTAARPPXXXXXXXXXXXRNFMNFSRLRGD 180

Query: 187 V------ESEPSNSKAMVREATVVDSCDTPSVGPESRASE--IARRKLVEAVNGADVWRE 246
                  ES P  SKA+VRE+T V    +PS  P + ASE  + RR              
Sbjct: 181 FNNGRGGESGPLLSKAVVRESTQV----SPSATPSAAASESGLTRR-------------- 240

Query: 247 TVCGSDGGGGASVSGDGVGEKELVTCEMTVTS-SPGGSSASAEPAAPKLAADDRKRKGRA 306
               +DG   ++V+G G   ++     MT  +                            
Sbjct: 241 ----TDGTDSSAVAGGGAYNRKGKAVAMTAPAIEXXXXXXXXXXXXXXXXXXXXXXXXXX 300

Query: 307 PDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIP 366
                                              VHNLSER+RRDRINE+MKALQELIP
Sbjct: 301 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNLSERKRRDRINERMKALQELIP 360

Query: 367 RCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXX 426
           RCNK+DKASMLDEAIEY+K+LQLQ+QMMSMGCGMMPMM+PG+QQY+P             
Sbjct: 361 RCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMP------HMAMGMG 420

Query: 427 XXXXXXXRPMMQFPNLLAGSN-LPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQA 486
                     M FPN+LA    LP Q   A +    G ++P+ A        S+PS+   
Sbjct: 421 MNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGS----GPQYPVHA--------SDPSRVFV 446

Query: 487 MNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQ 502
            N Q DP        +  P   +G+ D YQQF   +  Q
Sbjct: 481 PNQQYDP-------TSGQPQYPAGYTDPYQQFRGLHPTQ 446

[Close]

BLAST of Carg04893-RA vs. Swiss-Prot
Match: sp|Q8GT73|BH119_ARATH (Transcription factor bHLH119 OS=Arabidopsis thaliana OX=3702 GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-38
Identity = 167/499 (33.47%), Postives = 239/499 (47.90%), Query Frame = 0


Query: 24  TFSSLTRPRKS-SMP--------DDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIP 83
           T +  T P+ S S+P        +DDVVELLW++GQVV   Q QR +   PP  F     
Sbjct: 85  TSTPATHPQSSVSLPXXXXXAPSEDDVVELLWKSGQVVQSIQTQRPI---PPPIF----- 144

Query: 84  QDQTAAVATREIRPSSQLEEPH-DLFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLC 143
           +   +      + P   L   H ++F+QEDEMASWL +PL +D+ F S +   S T    
Sbjct: 145 RGSGSGGGEETVLPLPPLHPSHQNIFIQEDEMASWLYHPLRQDY-FSSGVASTSAT---- 204

Query: 144 GNSQTEPRPSATATVTLTQGPPTRPEKQSSVQ--------FSRNRATVESEPS-NSKAMV 203
                  RP ++A++  T  PP+ P  Q  V+        F R R  + S     +  +V
Sbjct: 205 -------RPQSSASLAPTPPPPSVPYGQIPVERRTENFMNFLRLRGNIFSGGRVEAGPVV 264

Query: 204 REATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGE 263
            E+T + S  TPS       S  A   ++ A +G +     + G       +V G G   
Sbjct: 265 IESTQIGSSATPS-------SSAAESCVIPATHGTESRAAAITGV--SRTFAVPGLGRRG 324

Query: 264 KELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQ 323
           KE+ T E   TS  G + A  E    +      +R+ +  +D + +    E + T+   +
Sbjct: 325 KEVAT-ETAGTSYSGVNKAETERVQIQ-----PERETKITEDKKREETIAEIQGTE---E 384

Query: 324 LRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTL 383
             GSTS KRSRAA++HNLSERRRR+RINE+MK LQEL+PRC KTDK SML++ IEY+K+L
Sbjct: 385 AHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYVKSL 444

Query: 384 QLQVQMMSMGCGMM-PMMFPG-VQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAG 443
           QLQ+QMMSMG GMM PMM  G  QQ++P                     P + FP    G
Sbjct: 445 QLQIQMMSMGHGMMPPMMHEGNTQQFMP--------HMAMGMKGMNRPPPFVPFP----G 504

Query: 444 SNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPP 502
              P     A     +G  +P   +  P    S+ S+    +   +P+ N         P
Sbjct: 505 KTFPRPGHMAG----VGPSYPALRYPFPDTQASDLSRVHVPSLHSNPVPN--------QP 521

[Close]

BLAST of Carg04893-RA vs. Swiss-Prot
Match: sp|Q9SVU7|BH056_ARATH (Putative transcription factor bHLH056 OS=Arabidopsis thaliana OX=3702 GN=BHLH56 PE=3 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-34
Identity = 155/471 (32.91%), Postives = 224/471 (47.56%), Query Frame = 0


Query: 38  DDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHD 97
           +DD+VELLWQ+GQVV  +Q  R     PP        + +  A  +   +P   L +  +
Sbjct: 19  EDDIVELLWQSGQVVGTNQTHRQSYDPPPILRGSGSGRGEENAPLS---QPPPHLHQ-QN 78

Query: 98  LFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGNSQTEPRPSATATVTLTQGPPTR 157
           LF+QE EM SWL++   +++ FCS+LL          NS     P ++ ++   Q   TR
Sbjct: 79  LFIQEGEMYSWLHHSYRQNY-FCSELL----------NSTPATHPQSSISLAPRQTIATR 138

Query: 158 PEKQSSVQFSRNRATV-----ESEPSNSKAMVREATVVDSCDTPSVGPESRASEIARRKL 217
              ++ + FS  R  +       E   S ++VRE+  V S  TP   P S A+E     +
Sbjct: 139 -RAENFMNFSWLRGNIFTGGRVDEAGPSFSVVRESMQVGSNTTP---PSSSATESC---V 198

Query: 218 VEAVNGADVWRETVCGSDGGGGASVSGDGVGEK-ELVTCEMTVTSSPGGSSASAEPAAPK 277
           + A  G       V G       +++   +G K + V  E   T S G   A  EP   +
Sbjct: 199 IPATEGT---ASRVSG-------TLAAHDLGRKGKAVAVEAAGTPSSGVCKAETEPVQIQ 258

Query: 278 LAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRI 337
             A + K K R              E T   ++ RGSTS KRSR AE+HNL+ERRRR++I
Sbjct: 259 -PATESKLKAR--------------EETHGTEEARGSTSRKRSRTAEMHNLAERRRREKI 318

Query: 338 NEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPG-VQQYLP 397
           NEKMK LQ+LIPRCNK+ K S LD+AIEY+K+LQ Q+Q M     M PMM  G  QQ++P
Sbjct: 319 NEKMKTLQQLIPRCNKSTKVSTLDDAIEYVKSLQSQIQGM-----MSPMMNAGNTQQFMP 378

Query: 398 PXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMP 457
                                P + FP    G++ PM A  A     +G  +P P +  P
Sbjct: 379 -----------HMAMDMNRPPPFIPFP----GTSFPMPAQMAG----VGPSYPAPRYPFP 410

Query: 458 PVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQ 502
            +   +PS+ +  + QP+P+ N         P    + + Y QF   +Q+Q
Sbjct: 439 NIQTFDPSRVRLPSPQPNPVSN--------QPQFPAYMNPYSQFAGPHQLQ 410

[Close]

BLAST of Carg04893-RA vs. Swiss-Prot
Match: sp|Q9SVU6|BH023_ARATH (Transcription factor bHLH23 OS=Arabidopsis thaliana OX=3702 GN=BHLH23 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.7e-31
Identity = 134/377 (35.54%), Postives = 184/377 (48.81%), Query Frame = 0


Query: 28  LTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPPSKFDVSIPQDQTAAVATREIR 87
           L  P K  M +DD+VELL ++ QVV  SQ Q +    PP    +                
Sbjct: 14  LISPEKYIMGEDDIVELLGKSSQVVTSSQTQ-TPSCDPP--LILRGXXXXXXXXXXXXXX 73

Query: 88  PSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFCSDLLFPSITASLCGN-SQTEPRPSATA 147
               L     LF+QEDEMASWL+ P  +D+ + S LL+  + ++   + +  EP P   A
Sbjct: 74  XXXXLYHQQSLFIQEDEMASWLHQPNRQDYLY-SQLLYSGVASTHPQSLASLEPPPPPRA 133

Query: 148 TVTLTQGPPT-----RPEKQSSVQFSRNRAT-----VESEPSNSKAMVREATVVDSCDTP 207
              L    PT         ++ +  SR R       VE+ PSNS  +      + +    
Sbjct: 134 QYILAADRPTGHILAERRAENFMNISRQRGNIFLGGVEAVPSNSTLLSSATESIPA---- 193

Query: 208 SVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTS 267
           + G ESRA+         AV G            G  G +V+ +  G +    C+     
Sbjct: 194 THGTESRATVTGGVSRTFAVPGL-----------GPRGKAVAIETAGTQSWGLCKAET-- 253

Query: 268 SPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRA 327
                    +PA      D+RKRK R       +  +VE + T+   + R STS KRSRA
Sbjct: 254 ----EPVQRQPATETDITDERKRKTR-------EETNVENQGTE---EARDSTSSKRSRA 313

Query: 328 AEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCG 387
           A +H LSERRRR +INE MKALQEL+PRC KTD++SMLD+ IEY+K+LQ Q+QM SMG  
Sbjct: 314 AIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGHV 355

Query: 388 MM-PMMFPG--VQQYLP 391
           M+ PMM+ G   QQY+P
Sbjct: 374 MIPPMMYAGNIQQQYMP 355

[Close]

BLAST of Carg04893-RA vs. Swiss-Prot
Match: sp|Q10CH5|PIL13_ORYSJ (Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subsp. japonica OX=39947 GN=PIL13 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.1e-28
Identity = 91/202 (45.05%), Postives = 112/202 (55.45%), Query Frame = 0


Query: 300 DPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDEAIE 359
           + K   R   S +R+RAAEVHNLSERRRRDRINEKM+ALQELIP CNKTDKAS+LDEAIE
Sbjct: 205 ETKSSSRRYGSKRRTRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIE 264

Query: 360 YLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQFPNL 419
           YLK+LQ+QVQ+M M  GM PMMFPG  Q++PP                      M    +
Sbjct: 265 YLKSLQMQVQIMWMTTGMAPMMFPGAHQFMPPMAVG------------------MNSACM 324

Query: 420 LAGSNLPMQAGAAAAAAHLGQRFPLPAF-AMPPVPGSNPSQAQAMNNQPDPIVNPAGTQN 479
            A   L   +        +    PL +  AM P+  +N  Q   +    +P ++P G Q 
Sbjct: 325 PAAQGLSHMSRLPYMNHSMPNHIPLNSSPAMNPMNVANQMQNIQLREASNPFLHPDGWQ- 384

Query: 480 TAPPPVSGFPDSYQQFLSSNQV 501
           T PP VSG   S  Q    NQ+
Sbjct: 385 TVPPQVSGPYASGPQVAQQNQI 387

[Close]

BLAST of Carg04893-RA vs. TrEMBL
Match: tr|A0A0A0K531|A0A0A0K531_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G333400 PE=4 SV=1)

HSP 1 Score: 765.4 bits (1975), Expect = 1.0e-217
Identity = 427/514 (83.07%), Postives = 449/514 (87.35%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSS+PDDDV+ELLWQNGQVV HSQNQRS
Sbjct: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSLPDDDVMELLWQNGQVVTHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
            RKSPPSKFDVSIPQ+Q    ATREIRPS+QLEE H+LFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  FRKSPPSKFDVSIPQEQ---AATREIRPSTQLEEHHELFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPSATATVTLTQGPP----TRPEKQSSVQFSRNRATVESE 180
           SDLLFP+ITA LC N Q + RP                  RPE Q+SVQFSRN+ATVESE
Sbjct: 121 SDLLFPAITAPLCANPQPDIRPXXXXXXXXXXXXXXXXCRRPEVQTSVQFSRNKATVESE 180

Query: 181 PSNSKAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGAS 240
           PSNSK MVRE+TVVDSCDTPSVGPESRASE+ARRKLVE VNG  V  E   GSDG  GAS
Sbjct: 181 PSNSKVMVRESTVVDSCDTPSVGPESRASEMARRKLVEVVNGGGVRYEIARGSDGVRGAS 240

Query: 241 VSGDGVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEY 300
           V GDG+GEKE++TCEMTVTSSPGGSSASAEPA PKLA DDRKRKGRA DDTECQSEDVEY
Sbjct: 241 VGGDGIGEKEMMTCEMTVTSSPGGSSASAEPACPKLAVDDRKRKGRALDDTECQSEDVEY 300

Query: 301 ESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE 360
           ES DPKKQLRGSTS KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE
Sbjct: 301 ESADPKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE 360

Query: 361 AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQF 420
           AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPP    XXXXXXXXXXXXXXXRPMMQF
Sbjct: 361 AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPP----XXXXXXXXXXXXXXXRPMMQF 420

Query: 421 PNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGT 480
            NLLAGSNLPMQAG A AAAHLG RFPLP FAMPPVPG++PS+AQAMNNQPDP+ N  GT
Sbjct: 421 HNLLAGSNLPMQAG-ATAAAHLGPRFPLPPFAMPPVPGNDPSRAQAMNNQPDPMANSVGT 480

Query: 481 QNTAPPPVSGFPDSYQQFLSSNQVQFHIAQAVQH 511
           QNT PP V GFPDSYQQFLSS Q+QFH+ QA+Q+
Sbjct: 481 QNTTPPSVLGFPDSYQQFLSSTQMQFHMTQALQN 506

[Close]

BLAST of Carg04893-RA vs. TrEMBL
Match: tr|A0A1S3CFZ1|A0A1S3CFZ1_CUCME (transcription factor PIF1 OS=Cucumis melo OX=3656 GN=LOC103500471 PE=4 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 6.8e-214
Identity = 420/514 (81.71%), Postives = 443/514 (86.19%), Query Frame = 0


Query: 1   MIGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRS 60
           M GRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSS+PDDDVVELLWQNGQVV HSQNQRS
Sbjct: 1   MTGRLRMNHCVPDFEMADDFSLPTFSSLTRPRKSSLPDDDVVELLWQNGQVVTHSQNQRS 60

Query: 61  VRKSPPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVEDHNFC 120
           +RKSPPSKFDVSIPQ+Q    ATREIRPSSQLEE H+LFMQEDEMASWLNYPLVEDHNFC
Sbjct: 61  LRKSPPSKFDVSIPQEQ---AATREIRPSSQLEEHHELFMQEDEMASWLNYPLVEDHNFC 120

Query: 121 SDLLFPSITASLCGNSQTEPRPS----ATATVTLTQGPPTRPEKQSSVQFSRNRATVESE 180
           SDLLFP+ITA LC N Q + RPS              P  RPE Q+SVQFSRN+ATVESE
Sbjct: 121 SDLLFPAITAPLCANPQPDLRPSXXXXXXXXXXXXXXPCRRPEVQTSVQFSRNKATVESE 180

Query: 181 PSNSKAMVREATVVDSCDTPSVGPESRASEIARRKLVEAVNGADVWRETVCGSDGGGGAS 240
           PSNSK MVRE+TVVDSCDTPSVGPESRAS++ARRKLVE VNG  V  E   G DG  G S
Sbjct: 181 PSNSKVMVRESTVVDSCDTPSVGPESRASQMARRKLVEVVNGGGVRYEIARGGDGVRGPS 240

Query: 241 VSGDGVGEKELVTCEMTVTSSPGGSSASAEPAAPKLAADDRKRKGRAPDDTECQSEDVEY 300
           V GDG GEKE++TCEM+VTSSPGGSSASAEPA PKLA DDRKRKGRA DDTEC SED+EY
Sbjct: 241 VGGDGTGEKEMMTCEMSVTSSPGGSSASAEPACPKLAVDDRKRKGRALDDTECHSEDIEY 300

Query: 301 ESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE 360
           ES DPKKQLRGSTS KRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE
Sbjct: 301 ESADPKKQLRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKTDKASMLDE 360

Query: 361 AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPPXXXXXXXXXXXXXXXXXXXRPMMQF 420
           AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPP    XXXXXXXXXXXXXXXRPMMQF
Sbjct: 361 AIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPP----XXXXXXXXXXXXXXXRPMMQF 420

Query: 421 PNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMPPVPGSNPSQAQAMNNQPDPIVNPAGT 480
            NLLAGSNLPMQAG A AAAHLG RFPLP FAMPPVPG++PS+A AMNNQP P+ N  GT
Sbjct: 421 HNLLAGSNLPMQAG-ATAAAHLGPRFPLPPFAMPPVPGNDPSRAHAMNNQPGPMANSVGT 480

Query: 481 QNTAPPPVSGFPDSYQQFLSSNQVQFHIAQAVQH 511
           QNT PP V GFPDSYQQFLS  Q+QFH+ Q +Q+
Sbjct: 481 QNTTPPSVLGFPDSYQQFLSPTQMQFHMTQPLQN 506

[Close]

BLAST of Carg04893-RA vs. TrEMBL
Match: tr|A0A2I4GA54|A0A2I4GA54_9ROSI (transcription factor PIF1-like OS=Juglans regia OX=51240 GN=LOC109006060 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.4e-129
Identity = 310/538 (57.62%), Postives = 375/538 (69.70%), Query Frame = 0


Query: 7   MNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPP 66
           M HCVPDFEM DD+SLP+ S   RPRKSS+P D++VELLWQNGQVV  SQNQRS+R SPP
Sbjct: 1   MYHCVPDFEMDDDYSLPSSSGAARPRKSSLPQDEIVELLWQNGQVVMQSQNQRSMRVSPP 60

Query: 67  SKF-DVSIPQDQTAAVATREIRPSSQLEEP-----HDLFMQEDEMASWLNYPLVE----- 126
           SK+ D  IP +Q+AA   REIR S Q +E       +LFMQEDEM SWL+YPLV+     
Sbjct: 61  SKYSDAVIPAEQSAA---REIRSSQQEQESAEHQHQNLFMQEDEMTSWLHYPLVDDDPAL 120

Query: 127 DHNFCSDLLFPSITAS-LCGNSQTEP----------RPSATATVTLTQGPPTRPEK---- 186
           DHNFC+DLL+P +  S   GN+ T P          RP+ T  V  ++ PP  P +    
Sbjct: 121 DHNFCADLLYPPLNQSNNIGNNNTNPTIRTSSVTELRPAVTGGVGASR-PPIPPARMTEL 180

Query: 187 -----QSSVQFSRNRATV-----ESEPSNSKAM--VREATVVDSCDTPSVGPESRASEIA 246
                Q+ + FS ++A       ++EPS+SK+M  VRE+TVVDS DTP  GPES A    
Sbjct: 181 ADSKMQNFMHFSGHKARFIGGVDQTEPSSSKSMVVVRESTVVDSSDTPVAGPESWA---- 240

Query: 247 RRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTSSPGGSSASAEPA 306
            R   EA +  D    T+   DG G +S    G   KE+++CE+TVTSSPG SSAS EP+
Sbjct: 241 -RSAAEASDFGDRGCATLSCGDGAGTSSA---GAAAKEMMSCEVTVTSSPGCSSASGEPS 300

Query: 307 APKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRR 366
             K  A+DRKRKGR  +D +C  ED E+ES D KK++RGSTS KRSRAAEVHNLSERRRR
Sbjct: 301 L-KPPAEDRKRKGRNAEDADCHCEDAEFESGDTKKRVRGSTSTKRSRAAEVHNLSERRRR 360

Query: 367 DRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQY 426
           DRINEKM+ALQELIPRCNK+DKASMLDEAIEYLK+LQLQVQMMSMGCGM+PMMFPGVQQY
Sbjct: 361 DRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQY 420

Query: 427 LPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFA 486
           +P     XXXXXXXXXXXXX  RPM+ FPNLLAGS LP     +AAAAHLG RFP+PAF 
Sbjct: 421 MP---AMXXXXXXXXXXXXXINRPMIPFPNLLAGSALP----TSAAAAHLGPRFPMPAFH 480

Query: 487 MPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQFHIAQ 507
           MPPVP  +PS  QA  NQ + +++  GTQ+T+ P    F D YQQ+++++Q+Q  I Q
Sbjct: 481 MPPVPAPDPSGIQA-TNQSEQMLHSIGTQHTSQPRFPNFVDPYQQYIATHQMQLPIPQ 517

[Close]

BLAST of Carg04893-RA vs. TrEMBL
Match: tr|A0A2P5BRH6|A0A2P5BRH6_PARAD (Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=PanBHLH105 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 3.6e-122
Identity = 306/535 (57.20%), Postives = 355/535 (66.36%), Query Frame = 0


Query: 7   MNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSV-RKS- 66
           MNHCVPDFEM D++S+PT S L RP+KS +P++D++ELLWQNGQV+A SQNQRSV RKS 
Sbjct: 1   MNHCVPDFEMEDEYSIPTSSGLARPKKSYLPEEDIMELLWQNGQVIAQSQNQRSVMRKSS 60

Query: 67  -PPSKFDVSIPQDQTAAVATREIRPSSQLEEPHDLFMQEDEMASWLNYPLVE----DHNF 126
            P SK+D  IP D   + +        Q+ + H LFMQEDEMASWL+YPLV+    +HNF
Sbjct: 61  PPSSKYDAVIPADMEISSS------QGQVHDHHXLFMQEDEMASWLHYPLVDYPSLEHNF 120

Query: 127 CSDLLF----------PSITASLCGNSQTEPRPSATATVTLTQG-------PPTRPEKQS 186
            +DLL+               +L     +E RP  T      Q        PP R E Q+
Sbjct: 121 SADLLYXXXXXXXXXXXXXXPALRHTHFSEVRPPVTMADMPVQASSRPPVPPPARTEVQN 180

Query: 187 SVQFSR------NRATVESEPSNSKAMVRE--ATVVDSCDTPSVGPESRASEIARRKLVE 246
            V FSR      ++A  ES PS SK+ VRE   TVVDSCDTP+VGP SR SEI RR    
Sbjct: 181 FVHFSRHNNNSSSKARDESGPSCSKSAVRELSTTVVDSCDTPAVGPNSRVSEIGRRSSP- 240

Query: 247 AVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTSSPGGSSASAEP---AAPK 306
                    ET  G+   G  S    G G KE V CE T+TSSPG SSASAEP       
Sbjct: 241 --------GETSYGNLRSGYIS----GGGGKEAVRCEGTMTSSPGDSSASAEPPLATKST 300

Query: 307 LAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRRDRI 366
            A +DRKRK    DDTECQSED E+ES D KKQ RG+ S KRSRAAEVHNLSERRRRDRI
Sbjct: 301 AAGEDRKRKVVEADDTECQSEDAEFESGDVKKQARGTASTKRSRAAEVHNLSERRRRDRI 360

Query: 367 NEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQYLPP 426
           NEKMKALQELIPRCNK+DKASMLDEAIEYLK+LQLQVQMMSMGCGM+PMMFPG+QQY+PP
Sbjct: 361 NEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPP 420

Query: 427 XXXXXXXXXXXXXXXXXXXRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFAMPP 486
              XXXXXXXXXXXXXXXXRP+M FPN+L GS +     A A AAHLG RFP+PAF MPP
Sbjct: 421 -MGXXXXXXXXXXXXXXXXRPIMPFPNVLTGSAIT----APATAAHLGPRFPMPAFHMPP 480

Query: 487 VPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQFHIAQ 507
           VP +  S+AQA  NQPD +     TQN     +  F D YQQ+L S+Q+Q  + Q
Sbjct: 481 VPKTEASRAQA-TNQPDYMFQSFATQNPNQSRIPNFSDPYQQYLGSHQMQLPLQQ 510

[Close]

BLAST of Carg04893-RA vs. TrEMBL
Match: tr|A0A2I4ELR4|A0A2I4ELR4_9ROSI (transcription factor PIF1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108990727 PE=4 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 1.7e-119
Identity = 294/538 (54.65%), Postives = 360/538 (66.91%), Query Frame = 0


Query: 7   MNHCVPDFEMADDFSLPTFSSLTRPRKSSMPDDDVVELLWQNGQVVAHSQNQRSVRKSPP 66
           MNHCVPDFEM DD+SLP+ S   RPRKSS+P+D+++ELLWQNGQVV  SQNQRS+R+SPP
Sbjct: 1   MNHCVPDFEMDDDYSLPSSSGAARPRKSSLPEDEIMELLWQNGQVVMQSQNQRSMRRSPP 60

Query: 67  SKFDVSI-PQDQTAAVATREIRPSSQLEEP-----HDLFMQEDEMASWLNYPLVE----- 126
           SK++ ++ P DQ+   A REIR S + +E        LFMQEDEMASWL+YPLV+     
Sbjct: 61  SKYNNAVFPADQS---ANREIRSSQEEQESATHQHQHLFMQEDEMASWLHYPLVDDDPAL 120

Query: 127 DHNFCSDLLFPSITAS-----------LCGNSQTEPRPSATATVTLTQGPPTRPEK---- 186
           DHNFC+DLL+P+   S           +  N  TE R   T     T  PP  P +    
Sbjct: 121 DHNFCADLLYPTPNQSNNITNTNANLVVRTNDVTELRQKVTGGAG-TSRPPIPPGRRTDL 180

Query: 187 -----QSSVQFSRNRATV-----ESEPSNSKAM--VREATVVDSCDTPSVGPESRASEIA 246
                Q+ + FSR +  +      + P +SK+M  VRE+TVVDS +TP VGPES      
Sbjct: 181 ADSNVQNFMHFSRPKGRLAAGVDSTRPPSSKSMAVVRESTVVDSSETPVVGPESWTR--- 240

Query: 247 RRKLVEAVNGADVWRETVCGSDGGGGASVSGDGVGEKELVTCEMTVTSSPGGSSASAEPA 306
                 A   +D              A  S  G G KE+++CE+T+TSS G SSASAEPA
Sbjct: 241 -----SAAEASDFGNRGCPTMSCDAVAGTSSAGAGGKEMMSCEVTLTSSSGCSSASAEPA 300

Query: 307 APKLAADDRKRKGRAPDDTECQSEDVEYESTDPKKQLRGSTSMKRSRAAEVHNLSERRRR 366
                  +RKRKG   +D +C  EDVE+ES   KKQ+ GSTS KRSRAAEVHNLSERRRR
Sbjct: 301 RKPPVDYNRKRKGIEAEDADCHCEDVEFESVAAKKQVHGSTSTKRSRAAEVHNLSERRRR 360

Query: 367 DRINEKMKALQELIPRCNKTDKASMLDEAIEYLKTLQLQVQMMSMGCGMMPMMFPGVQQY 426
           DRINEKMKALQELIPRCNK+DKASMLDEAIEYLK+LQLQVQMMSMGCGM+PMMFPGVQQY
Sbjct: 361 DRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQY 420

Query: 427 LPPXXXXXXXXXXXXXXXXXXXRPMMQFPNLLAGSNLPMQAGAAAAAAHLGQRFPLPAFA 486
           +P     XXXXXXXXXXXXXXXR M+ FPN+LAGS L      +AAAAHLG R+P+PAF 
Sbjct: 421 MP---AMXXXXXXXXXXXXXXXRSMIPFPNMLAGSALQ----TSAAAAHLGPRYPMPAFH 480

Query: 487 MPPVPGSNPSQAQAMNNQPDPIVNPAGTQNTAPPPVSGFPDSYQQFLSSNQVQFHIAQ 507
           MPPVP  +PS+ QA  N+P  +++  GTQ+T+ P    F D YQQ+++++Q+Q  I Q
Sbjct: 481 MPPVPAPDPSRIQA-TNRPQQMLHSIGTQHTSQPRFPNFVDPYQQYVATHQMQLPIPQ 518

The following BLAST results are available for this feature:

BLAST of Carg04893-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960182.1	1.9e-268	98.25	transcription factor PIF1-like isoform X2 [Cucurbita moschata]	[more]
XP_022960179.1	2.5e-268	97.69	transcription factor PIF1-like isoform X1 [Cucurbita moschata] >XP_022960180.1 t...	[more]
XP_023514409.1	1.4e-266	97.50	transcription factor PIF1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_02351...	[more]
XP_023514413.1	6.8e-266	97.86	transcription factor PIF1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023004992.1	8.3e-264	97.28	transcription factor PIF1-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg04893-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20180.2	1.6e-51	36.42	phytochrome interacting factor 3-like 5	[more]
AT4G28811.1	1.4e-39	33.47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G28800.1	7.2e-36	32.91	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G28790.1	4.8e-32	35.54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G09530.1	3.3e-25	32.29	phytochrome interacting factor 3	[more]

BLAST of Carg04893-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GZM7\|PIF1_ARATH	2.9e-50	36.42	Transcription factor PIF1 OS=Arabidopsis thaliana OX=3702 GN=PIF1 PE=1 SV=1	[more]
sp\|Q8GT73\|BH119_ARATH	2.5e-38	33.47	Transcription factor bHLH119 OS=Arabidopsis thaliana OX=3702 GN=BHLH119 PE=2 SV=...	[more]
sp\|Q9SVU7\|BH056_ARATH	1.3e-34	32.91	Putative transcription factor bHLH056 OS=Arabidopsis thaliana OX=3702 GN=BHLH56 ...	[more]
sp\|Q9SVU6\|BH023_ARATH	8.7e-31	35.54	Transcription factor bHLH23 OS=Arabidopsis thaliana OX=3702 GN=BHLH23 PE=2 SV=1	[more]
sp\|Q10CH5\|PIL13_ORYSJ	3.1e-28	45.05	Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13 OS=Oryza sativa subs...	[more]

BLAST of Carg04893-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K531\|A0A0A0K531_CUCSA	1.0e-217	83.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G333400 PE=4 SV=1	[more]
tr\|A0A1S3CFZ1\|A0A1S3CFZ1_CUCME	6.8e-214	81.71	transcription factor PIF1 OS=Cucumis melo OX=3656 GN=LOC103500471 PE=4 SV=1	[more]
tr\|A0A2I4GA54\|A0A2I4GA54_9ROSI	1.4e-129	57.62	transcription factor PIF1-like OS=Juglans regia OX=51240 GN=LOC109006060 PE=4 SV...	[more]
tr\|A0A2P5BRH6\|A0A2P5BRH6_PARAD	3.6e-122	57.20	Basic helix-loop-helix transcription factor OS=Parasponia andersonii OX=3476 GN=...	[more]
tr\|A0A2I4ELR4\|A0A2I4ELR4_9ROSI	1.7e-119	54.65	transcription factor PIF1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108990...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg04893	Carg04893	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04893-RA.exon.1	Carg04893-RA.exon.1	exon
Carg04893-RA.exon.2	Carg04893-RA.exon.2	exon
Carg04893-RA.exon.3	Carg04893-RA.exon.3	exon
Carg04893-RA.exon.4	Carg04893-RA.exon.4	exon
Carg04893-RA.exon.5	Carg04893-RA.exon.5	exon
Carg04893-RA.exon.6	Carg04893-RA.exon.6	exon
Carg04893-RA.exon.7	Carg04893-RA.exon.7	exon
Carg04893-RA.exon.8	Carg04893-RA.exon.8	exon
Carg04893-RA.exon.9	Carg04893-RA.exon.9	exon
Carg04893-RA.exon.10	Carg04893-RA.exon.10	exon
Carg04893-RA.exon.11	Carg04893-RA.exon.11	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04893-RA.five_prime_UTR.1	Carg04893-RA.five_prime_UTR.1	five_prime_UTR
Carg04893-RA.five_prime_UTR.2	Carg04893-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg04893-RA.CDS.1	Carg04893-RA.CDS.1	CDS
Carg04893-RA.CDS.2	Carg04893-RA.CDS.2	CDS
Carg04893-RA.CDS.3	Carg04893-RA.CDS.3	CDS
Carg04893-RA.CDS.4	Carg04893-RA.CDS.4	CDS
Carg04893-RA.CDS.5	Carg04893-RA.CDS.5	CDS
Carg04893-RA.CDS.6	Carg04893-RA.CDS.6	CDS
Carg04893-RA.CDS.7	Carg04893-RA.CDS.7	CDS
Carg04893-RA.CDS.8	Carg04893-RA.CDS.8	CDS
Carg04893-RA.CDS.9	Carg04893-RA.CDS.9	CDS
Carg04893-RA.CDS.10	Carg04893-RA.CDS.10	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg04893-RA	Carg04893-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 321..341
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..324
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 90..513
None	No IPR available	PANTHER	PTHR12565:SF194	TRANSCRIPTION FACTOR PIF1-RELATED	coord: 90..513
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 321..370 e-value: 3.4E-18 score: 76.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 319..365 e-value: 1.1E-13 score: 50.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 315..364 score: 18.165
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 318..369 e-value: 7.85969E-17 score: 74.9431
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 310..373 e-value: 1.4E-19 score: 71.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 313..381