Carg03597-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATTTCGTATTTGTCCAATAAGGTTAGTTCCAACATGGATTTGTTCCGCAACGCAAAGGTGGTGCTGCTCCGAAGCCATACCAACAAGTATTTGTTTGCCGACGAGGATGAGGAGTCCGTTACTCAGAGCCGAAACGGATGGACCAAGAATGCGAGATGGAGCGTTGAGTTCGTTAGGTTTTCTGATTCAATAATCAGGCTCAAGAGCTGCTACGGCAACTACTTGACGGCATCGAACCAGCGGTTGTTTCTCGGAATGACCGGCATGAAGGTTCTGCAGACTCGTCCAGAGCGGTTGGACTCGTCGCATGAGTGGGAGCCGATCAAAGAACGCTCGCTTGTGAGACTAAAAACGCAGCACGGTAGTTTCTTGAGAGGCAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGCGCCACATCGTACCGTTACACAGGAATGGATTCTATGGAATGTTGAAGTTATCGAAACAGAGATTCAATCCTCCGTTCACAAAACCCTAGCTCAACCCGAACCCGACCTGTATTCAACATCATCTTCGGTTTCATTTGAATCTGGACGTCCTTCAACATCAGAGGTACGTTACTAAACTATTACCCCAAATTCAATTTGATGAACCCTAACTTTACACGATATGAATTTTCAGTCGACTAATTCTGGAGCCTTGAACACATTACCTAAACCGGAAGGGAGGAGGATATTTTACCAGATTGCTGATGACGATGGGAGGATGAAGATTCGAAGAGGCATATTTTATCAGACTGCTGATGACGAGTGGAGGATGAAGATTCAAAGAGGCACTCTTTGATCCAACAACTCAACTTTGAAAGTTGTTTTGGTTTTGAAATCTTCTAAACGTAAGAATCTTTGAACCCTTCCAAACCCTTTGATTTGAAAGGGTTCAAACAGAATGTATAGTTTAAACAATGGCACACTTATCTGGATATAATAACAACATAAACGTTCAAAATTTTGTCTATTAGTTAGTTCGTGCGAAACAAGAATACCCAATCAAAATTGAAAATTCAACGATCTATTAGACATAAAATT ATGGAATTTCGTATTTGTCCAATAAGGTTAGTTCCAACATGGATTTGTTCCGCAACGCAAAGGTGGTGCTGCTCCGAAGCCATACCAACAAGTATTTGTTTGCCGACGAGGATGAGGAGTCCGTTACTCAGAGCCGAAACGGATGGACCAAGAATGCGAGATGGAGCGTTGAGTTCGTTAGGTTTTCTGATTCAATAATCAGGCTCAAGAGCTGCTACGGCAACTACTTGACGGCATCGAACCAGCGGTTGTTTCTCGGAATGACCGGCATGAAGGTTCTGCAGACTCGTCCAGAGCGGTTGGACTCGTCGCATGAGTGGGAGCCGATCAAAGAACGCTCGCTTGTGAGACTAAAAACGCAGCACGGTAGTTTCTTGAGAGGCAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGCGCCACATCGTACCGTTACACAGGAATGGATTCTATGGAATGTTGAAGTTATCGAAACAGAGATTCAATCCTCCGTTCACAAAACCCTAGCTCAACCCGAACCCGACCTGTATTCAACATCATCTTCGGTTTCATTTGAATCTGGACGTCCTTCAACATCAGAGTCGACTAATTCTGGAGCCTTGAACACATTACCTAAACCGGAAGGGAGGAGGATATTTTACCAGATTGCTGATGACGATGGGAGGATGAAGATTCGAAGAGGCATATTTTATCAGACTGCTGATGACGAGTGGAGGATGAAGATTCAAAGAGGCACTCTTTGATCCAACAACTCAACTTTGAAAGTTGTTTTGGTTTTGAAATCTTCTAAACGTAAGAATCTTTGAACCCTTCCAAACCCTTTGATTTGAAAGGGTTCAAACAGAATGTATAGTTTAAACAATGGCACACTTATCTGGATATAATAACAACATAAACGTTCAAAATTTTGTCTATTAGTTAGTTCGTGCGAAACAAGAATACCCAATCAAAATTGAAAATTCAACGATCTATTAGACATAAAATT ATGGATTTGTTCCGCAACGCAAAGGTGGTGCTGCTCCGAAGCCATACCAACAAGTATTTGTTTGCCGACGAGGATGAGGAGTCCGTTACTCAGAGCCGAAACGGATGGACCAAGAATGCGAGATGGAGCGTTGAGTTCGTTAGGTTTTCTGATTCAATAATCAGGCTCAAGAGCTGCTACGGCAACTACTTGACGGCATCGAACCAGCGGTTGTTTCTCGGAATGACCGGCATGAAGGTTCTGCAGACTCGTCCAGAGCGGTTGGACTCGTCGCATGAGTGGGAGCCGATCAAAGAACGCTCGCTTGTGAGACTAAAAACGCAGCACGGTAGTTTCTTGAGAGGCAACGGCGGTGTTCCGCCGTGGCGGAACTCGGTCACTCACGATGCGCCACATCGTACCGTTACACAGGAATGGATTCTATGGAATGTTGAAGTTATCGAAACAGAGATTCAATCCTCCGTTCACAAAACCCTAGCTCAACCCGAACCCGACCTGTATTCAACATCATCTTCGGTTTCATTTGAATCTGGACGTCCTTCAACATCAGAGTCGACTAATTCTGGAGCCTTGAACACATTACCTAAACCGGAAGGGAGGAGGATATTTTACCAGATTGCTGATGACGATGGGAGGATGAAGATTCGAAGAGGCATATTTTATCAGACTGCTGATGACGAGTGGAGGATGAAGATTCAAAGAGGCACTCTTTGA MDLFRNAKVVLLRSHTNKYLFADEDEESVTQSRNGWTKNARWSVEFVRFSDSIIRLKSCYGNYLTASNQRLFLGMTGMKVLQTRPERLDSSHEWEPIKERSLVRLKTQHGSFLRGNGGVPPWRNSVTHDAPHRTVTQEWILWNVEVIETEIQSSVHKTLAQPEPDLYSTSSSVSFESGRPSTSESTNSGALNTLPKPEGRRIFYQIADDDGRMKIRRGIFYQTADDEWRMKIQRGTL
BLAST of Carg03597-RA vs. NCBI nr
Match: XP_022934775.1 (uncharacterized protein LOC111441849 isoform X1 [Cucurbita moschata]) HSP 1 Score: 428.7 bits (1101), Expect = 1.3e-116 Identity = 211/216 (97.69%), Postives = 212/216 (98.15%), Query Frame = 0
BLAST of Carg03597-RA vs. NCBI nr
Match: XP_022934776.1 (uncharacterized protein LOC111441849 isoform X2 [Cucurbita moschata]) HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106 Identity = 198/216 (91.67%), Postives = 199/216 (92.13%), Query Frame = 0
BLAST of Carg03597-RA vs. NCBI nr
Match: XP_023528938.1 (uncharacterized protein LOC111791706 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 384.8 bits (987), Expect = 2.1e-103 Identity = 194/216 (89.81%), Postives = 198/216 (91.67%), Query Frame = 0
BLAST of Carg03597-RA vs. NCBI nr
Match: XP_023002141.1 (uncharacterized protein LOC111496090 [Cucurbita maxima]) HSP 1 Score: 296.2 bits (757), Expect = 9.9e-77 Identity = 152/219 (69.41%), Postives = 166/219 (75.80%), Query Frame = 0
BLAST of Carg03597-RA vs. NCBI nr
Match: XP_022951507.1 (uncharacterized protein LOC111454304 [Cucurbita moschata]) HSP 1 Score: 295.0 bits (754), Expect = 2.2e-76 Identity = 151/219 (68.95%), Postives = 166/219 (75.80%), Query Frame = 0
BLAST of Carg03597-RA vs. TAIR10
Match: AT1G59710.1 (Protein of unknown function (DUF569)) HSP 1 Score: 219.2 bits (557), Expect = 2.8e-57 Identity = 114/211 (54.03%), Postives = 143/211 (67.77%), Query Frame = 0
BLAST of Carg03597-RA vs. TAIR10
Match: AT1G27100.1 (Actin cross-linking protein) HSP 1 Score: 215.3 bits (547), Expect = 4.0e-56 Identity = 109/224 (48.66%), Postives = 153/224 (68.30%), Query Frame = 0
BLAST of Carg03597-RA vs. TAIR10
Match: AT3G01311.1 (Protein of unknown function (DUF569)) HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53 Identity = 109/214 (50.93%), Postives = 143/214 (66.82%), Query Frame = 0
BLAST of Carg03597-RA vs. TAIR10
Match: AT1G69890.1 (Protein of unknown function (DUF569)) HSP 1 Score: 193.4 bits (490), Expect = 1.6e-49 Identity = 103/215 (47.91%), Postives = 136/215 (63.26%), Query Frame = 0
BLAST of Carg03597-RA vs. TAIR10
Match: AT1G69900.1 (Actin cross-linking protein) HSP 1 Score: 175.3 bits (443), Expect = 4.6e-44 Identity = 86/152 (56.58%), Postives = 114/152 (75.00%), Query Frame = 0
BLAST of Carg03597-RA vs. TrEMBL
Match: tr|A0A1S3CMD3|A0A1S3CMD3_CUCME (uncharacterized protein LOC103502590 OS=Cucumis melo OX=3656 GN=LOC103502590 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 1.2e-73 Identity = 143/220 (65.00%), Postives = 168/220 (76.36%), Query Frame = 0
BLAST of Carg03597-RA vs. TrEMBL
Match: tr|A0A0A0KG10|A0A0A0KG10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G403600 PE=4 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 4.9e-72 Identity = 139/216 (64.35%), Postives = 167/216 (77.31%), Query Frame = 0
BLAST of Carg03597-RA vs. TrEMBL
Match: tr|M5XFV6|M5XFV6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G265200 PE=4 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 8.9e-66 Identity = 135/219 (61.64%), Postives = 166/219 (75.80%), Query Frame = 0
BLAST of Carg03597-RA vs. TrEMBL
Match: tr|A0A2P4KBW3|A0A2P4KBW3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_41620 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65 Identity = 128/222 (57.66%), Postives = 160/222 (72.07%), Query Frame = 0
BLAST of Carg03597-RA vs. TrEMBL
Match: tr|A0A2P4L6A9|A0A2P4L6A9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_77657 PE=4 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65 Identity = 128/222 (57.66%), Postives = 160/222 (72.07%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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