Carg03450-RA (mRNA) Silver-seed gourd

Overview
NameCarg03450-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionElongation factor 2
LocationCucurbita_argyrosperma_scaffold_005 : 1945896 .. 1946714 (-)
Sequence length298
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATATTAAACGTATTATCACTTTCCCACCCTTCTCATTCCTCCTCTGCCGCACGCTGTCTCGGTGCTCTCTGCTTCTCGATTCATTTCTGCAGGCTAGAGGGGGGTGTCTTCCTTTTGTTCTTCCTCCATCGCTGCACAGGTTCTTCTTCCTTCTGATTCAGCTTTCTAGTAATTTCAGTGTTCTTTTGTCTCTAGATTATTTCGTGCATGTTTGTTTGTGCGACTTACCAGATCTGCTTGCTCCGTTGTTTATATTCGACGGATGTTTACAAGATCCGTTAGGTAGTCGTTAATCTTCGATGGATCGGATGATTGAAAGAAATTATCTGTTGCTTAATCCAAGTAATTTCGTCGAAGTTTTAGTTACTTTGTTAATGAATGAATTCGTTCAATCTACGTGGCTTCGGCTAATGAGCTGGCTATGTTAACGTTTGTTTTATTTTTGTAATGATGTGTATGTTTTTCTAACTTAAAAGTTATGATTTTGGTTTGCGATATTGTTACTGTTTGTTTTGTTTAATTTATCGTTTTAACAGTAATATTTCTTTTTTCAGCGGTTTATATAGTCTCTATTTCTTGGACATTGTGAGGATTTAGAGGACTTGTCAAGATGGTTAGTATTCTCTCCTCGTCGCGATTTTAATCGAGTGATGTGCGAATTGCTTCTTCAATTCCTTATCTGCTTTCACTTATTAATATTTGAAATTATGTGCGTACAGGTGAAGTTTACAGCCGAGGAGCTCCGTCGAATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGTTATTT

mRNA sequence

CATATTAAACGTATTATCACTTTCCCACCCTTCTCATTCCTCCTCTGCCGCACGCTGTCTCGGTGCTCTCTGCTTCTCGATTCATTTCTGCAGGCTAGAGGGGGGTGTCTTCCTTTTGTTCTTCCTCCATCGCTGCACAGCGGTTTATATAGTCTCTATTTCTTGGACATTGTGAGGATTTAGAGGACTTGTCAAGATGGTGAAGTTTACAGCCGAGGAGCTCCGTCGAATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGTTATTT

Coding sequence (CDS)

ATGGTGAAGTTTACAGCCGAGGAGCTCCGTCGAATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGTAAGTTATTT

Protein sequence

MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKLF
Homology
[Close]
BLAST of Carg03450-RA vs. NCBI nr
Match: KGN46821.1 (hypothetical protein Csa_6G139210 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKLF 35
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK+F
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 34

[Close]
BLAST of Carg03450-RA vs. NCBI nr
Match: XP_011658408.1 (PREDICTED: elongation factor 2-like [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 9.7e-10
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKLF 35
          +VKFTAEELRRIMDYKHNIRNMSVIAHVDHGK+F
Sbjct: 7  LVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 40

[Close]
BLAST of Carg03450-RA vs. NCBI nr
Match: XP_011657107.1 (PREDICTED: elongation factor 2 [Cucumis sativus] >KGN47028.1 hypothetical protein Csa_6G176410 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. NCBI nr
Match: XP_004294071.1 (PREDICTED: elongation factor 2-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. NCBI nr
Match: XP_004294072.1 (PREDICTED: elongation factor 2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. TAIR10
Match: AT1G56070.1 (Ribosomal protein S5/Elongation factor G/III/V family protein)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. Swiss-Prot
Match: sp|Q9ASR1|EF2_ARATH (Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-11
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. Swiss-Prot
Match: sp|O23755|EF2_BETVU (Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-09
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTA+ELR IMD KHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTADELRAIMDCKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. Swiss-Prot
Match: sp|P28996|EF2_PARKE (Elongation factor 2 OS=Parachlorella kessleri OX=3074 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-07
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFT +++R +M+Y++NIRNMSVIAHVDHGK
Sbjct: 1  MVKFTIDQIRGLMEYQNNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. Swiss-Prot
Match: sp|P29691|EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans OX=6239 GN=eef-2 PE=1 SV=4)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MV FT +E+R +MD K NIRNMSVIAHVDHGK
Sbjct: 1  MVNFTVDEIRALMDRKRNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. Swiss-Prot
Match: sp|P13060|EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster OX=7227 GN=EF2 PE=1 SV=4)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MV FT +E+R +MD K NIRNMSVIAHVDHGK
Sbjct: 1  MVNFTVDEIRGLMDKKRNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. TrEMBL
Match: tr|A0A0A0KGD1|A0A0A0KGD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139210 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-10
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKLF 35
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK+F
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKIF 34

[Close]
BLAST of Carg03450-RA vs. TrEMBL
Match: tr|I1KU21|I1KU21_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804251 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. TrEMBL
Match: tr|I1MJ86|I1MJ86_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100788357 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. TrEMBL
Match: tr|A0A251PKB1|A0A251PKB1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138900 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

[Close]
BLAST of Carg03450-RA vs. TrEMBL
Match: tr|A0A251PKA7|A0A251PKA7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138700 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.4e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0 

Query: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 33
          MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK
Sbjct: 1  MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGK 32

The following BLAST results are available for this feature:
BLAST of Carg03450-RA vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46821.14.4e-1097.06hypothetical protein Csa_6G139210 [Cucumis sativus][more]
XP_011658408.19.7e-1094.12PREDICTED: elongation factor 2-like [Cucumis sativus][more]
XP_011657107.13.7e-09100.00PREDICTED: elongation factor 2 [Cucumis sativus] >KGN47028.1 hypothetical protei... [more]
XP_004294071.13.7e-09100.00PREDICTED: elongation factor 2-like [Fragaria vesca subsp. vesca][more]
XP_004294072.13.7e-09100.00PREDICTED: elongation factor 2 [Fragaria vesca subsp. vesca][more]
BLAST of Carg03450-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT1G56070.11.5e-1296.88Ribosomal protein S5/Elongation factor G/III/V family protein[more]
BLAST of Carg03450-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ASR1|EF2_ARATH2.7e-1196.88Elongation factor 2 OS=Arabidopsis thaliana OX=3702 GN=LOS1 PE=1 SV=1[more]
sp|O23755|EF2_BETVU1.5e-0990.63Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1[more]
sp|P28996|EF2_PARKE2.4e-0771.88Elongation factor 2 OS=Parachlorella kessleri OX=3074 PE=2 SV=1[more]
sp|P29691|EF2_CAEEL4.0e-0775.00Elongation factor 2 OS=Caenorhabditis elegans OX=6239 GN=eef-2 PE=1 SV=4[more]
sp|P13060|EF2_DROME5.2e-0775.00Elongation factor 2 OS=Drosophila melanogaster OX=7227 GN=EF2 PE=1 SV=4[more]
BLAST of Carg03450-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KGD1|A0A0A0KGD1_CUCSA2.9e-1097.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139210 PE=4 SV=1[more]
tr|I1KU21|I1KU21_SOYBN2.4e-09100.00Uncharacterized protein OS=Glycine max OX=3847 GN=100804251 PE=4 SV=1[more]
tr|I1MJ86|I1MJ86_SOYBN2.4e-09100.00Uncharacterized protein OS=Glycine max OX=3847 GN=100788357 PE=4 SV=1[more]
tr|A0A251PKB1|A0A251PKB1_PRUPE2.4e-09100.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138900 PE=4 SV=1[more]
tr|A0A251PKA7|A0A251PKA7_PRUPE2.4e-09100.00Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G138700 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg03450Carg03450gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg03450-RACarg03450-RA-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03450-RA.CDS.2Carg03450-RA.CDS.2CDS
Carg03450-RA.CDS.1Carg03450-RA.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03450-RA.five_prime_UTR.2Carg03450-RA.five_prime_UTR.2five_prime_UTR
Carg03450-RA.five_prime_UTR.1Carg03450-RA.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg03450-RA.exon.3Carg03450-RA.exon.3exon
Carg03450-RA.exon.2Carg03450-RA.exon.2exon
Carg03450-RA.exon.1Carg03450-RA.exon.1exon


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 3..33
e-value: 4.0E-7
score: 31.4
NoneNo IPR availablePANTHERPTHR42908FAMILY NOT NAMEDcoord: 1..32
NoneNo IPR availablePANTHERPTHR42908:SF10ELONGATION FACTOR 2coord: 1..32
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..32