Carg03438-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03438-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	conserved oligomeric Golgi complex subunit 5
Location	Cucurbita_argyrosperma_scaffold_005 : 1882264 .. 1883216 (-)
Sequence length	486

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGAAGACATGGTCGTTGAAGAAGGTGAGGAAGGAGCTGTGGCCATGGCGGTTTTCGCTCTTCGGAAGGAACCCAATGGATCTTCGGATGATTCATTTCGTGGTTGATAATGTGTTCTTCAAGATCGTCTCTGTCGTGGAAGCCATTGTTTTGGTCTCTACACTTTGTTTTTTCTATCTATGCTGTGGCGGTCATGTCTGATTCTTTTGCTTCATTTCTTCATTCTTTTCGTTCTTGTATGTATCTTCGTAATTTGTTATAATTCTTTCGGAGTTTGATGTACCTCTAGCTGTTTTTGCAATATATTATATACAAAGTTAAACTAATTTATCTCGTTTAATGTAATATGATGTCATAATTGTGTCGTCATACCTAATTTTAATTAAAAGGACAGATGCATCATCAAACACACTGTATGTCAGGTAAAGTTGAGGTTAAGTCGATTAAGTCGAAGGATCAAATCTTTGAAATCAATATTTTTGGTCCTCACCAGCTCTGGCCTCCACTGACGAGAAATGATATTGTCCATTTTGAATATAAGATACTGTGACTTCTCCCGTGCTCTCCGGCCGCAATGATCTGCTTTCTCAACTCTCATCTACGCTGAGAATGCTCTCTCCACCGTTCGATTCAGTGTCTTCTCCCTTCAATCCTCAGTCCGCCATGTCTGGTTCGAGCTTTCTGAACCTAGAAATGTCGTTTTTACCGAACCGTTTCAGTTCTCCAATTTTCACCGAACTACCAAGCTTCTTCACCATACTATTCGTGCTTTTCGTTTTTCGAAGAAGCTTAGGGACCTTGCTTCTGCGTCTGTCGAAGAGCCTGAGAAGGTGGATCTCGCTAAGGCTGCCCAGCTGCGCTTTGAGAAATTGAGCCTTTGCTATGAGTTTGACCTAGCGGGCGTTGATGCCGTTGACGAGGAGTTGAAATGGGGGATGCATTGA

mRNA sequence

ATGGGGAAGAAGAAGACATGGTCGTTGAAGAAGGTGAGGAAGGAGCTGTGGCCATGGCGGTTTTCGCTCTTCGGAAGGAACCCAATGGATCTTCGGATGATTCATTTCGTGGTTGATAATGTGTTCTTCAAGATCGTCTCTGTCGTGGAAGCCATTGTTTTGGTCTCTACACTTTGTTTTTTCTATCTATGCTGTGGCGTCCGCCATGTCTGGTTCGAGCTTTCTGAACCTAGAAATGTCGTTTTTACCGAACCGTTTCAGTTCTCCAATTTTCACCGAACTACCAAGCTTCTTCACCATACTATTCGTGCTTTTCGTTTTTCGAAGAAGCTTAGGGACCTTGCTTCTGCGTCTGTCGAAGAGCCTGAGAAGGTGGATCTCGCTAAGGCTGCCCAGCTGCGCTTTGAGAAATTGAGCCTTTGCTATGAGTTTGACCTAGCGGGCGTTGATGCCGTTGACGAGGAGTTGAAATGGGGGATGCATTGA

Coding sequence (CDS)

ATGGGGAAGAAGAAGACATGGTCGTTGAAGAAGGTGAGGAAGGAGCTGTGGCCATGGCGGTTTTCGCTCTTCGGAAGGAACCCAATGGATCTTCGGATGATTCATTTCGTGGTTGATAATGTGTTCTTCAAGATCGTCTCTGTCGTGGAAGCCATTGTTTTGGTCTCTACACTTTGTTTTTTCTATCTATGCTGTGGCGTCCGCCATGTCTGGTTCGAGCTTTCTGAACCTAGAAATGTCGTTTTTACCGAACCGTTTCAGTTCTCCAATTTTCACCGAACTACCAAGCTTCTTCACCATACTATTCGTGCTTTTCGTTTTTCGAAGAAGCTTAGGGACCTTGCTTCTGCGTCTGTCGAAGAGCCTGAGAAGGTGGATCTCGCTAAGGCTGCCCAGCTGCGCTTTGAGAAATTGAGCCTTTGCTATGAGTTTGACCTAGCGGGCGTTGATGCCGTTGACGAGGAGTTGAAATGGGGGATGCATTGA

Protein sequence

MGKKKTWSLKKVRKELWPWRFSLFGRNPMDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCGVRHVWFELSEPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRFEKLSLCYEFDLAGVDAVDEELKWGMH

Homology

[Close]

BLAST of Carg03438-RA vs. NCBI nr
Match: XP_008456343.1 (PREDICTED: conserved oligomeric Golgi complex subunit 5 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 76  EPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRF 135
           EPRNVVFT+  QFSN H+TT+LL HTIRA R SKKLRDLASAS ++PEK+DL+KAAQL  
Sbjct: 153 EPRNVVFTKTVQFSNLHQTTELLQHTIRALRLSKKLRDLASASADDPEKLDLSKAAQLHC 212

Query: 136 EKLSLCYEFDLAGVDAVDEELKW 159
           E LSLC EFDLAG+D VDEELKW
Sbjct: 213 EILSLCNEFDLAGIDVVDEELKW 235

[Close]

BLAST of Carg03438-RA vs. NCBI nr
Match: XP_004145805.1 (PREDICTED: conserved oligomeric Golgi complex subunit 5 [Cucumis sativus] >KGN46824.1 hypothetical protein Csa_6G139240 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 76  EPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRF 135
           EPRNVVFT+  QFSN H+TT+LL HTIRA R SKKLR+LASAS ++PEK+DLAKAAQL  
Sbjct: 153 EPRNVVFTKTVQFSNLHQTTELLQHTIRALRLSKKLRELASASADDPEKLDLAKAAQLHC 212

Query: 136 EKLSLCYEFDLAGVDAVDEELKW 159
           E LSLC EFDLAG+D VDEELKW
Sbjct: 213 EILSLCTEFDLAGIDVVDEELKW 235

[Close]

BLAST of Carg03438-RA vs. NCBI nr
Match: XP_022947438.1 (conserved oligomeric Golgi complex subunit 5 [Cucurbita moschata])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 83  TEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRFEKLSLCY 142
           T+  QFSN H TT+LL HTIRA R SKKLRDLASAS +EPEK+DLAKAAQL  E LSLC 
Sbjct: 157 TKTVQFSNLHETTELLQHTIRALRLSKKLRDLASASADEPEKLDLAKAAQLHCEILSLCN 216

Query: 143 EFDLAGVDAVDEELKW 159
           E+DLAG+D VDEELKW
Sbjct: 217 EYDLAGIDVVDEELKW 232

[Close]

BLAST of Carg03438-RA vs. NCBI nr
Match: XP_022970800.1 (conserved oligomeric Golgi complex subunit 5 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 83  TEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRFEKLSLCY 142
           T+  QFSN H TT+LL HTIRA R SKKLRDLASAS +EPEK+DLAKAAQL  E LSLC 
Sbjct: 157 TKTVQFSNLHETTELLQHTIRALRLSKKLRDLASASADEPEKLDLAKAAQLHCEILSLCN 216

Query: 143 EFDLAGVDAVDEELKW 159
           E+DLAG+D VDEELKW
Sbjct: 217 EYDLAGIDVVDEELKW 232

[Close]

BLAST of Carg03438-RA vs. NCBI nr
Match: XP_023533313.1 (conserved oligomeric Golgi complex subunit 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 57/76 (75.00%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 83  TEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRFEKLSLCY 142
           T+  QFSN H TT+LL HTIRA R SKKLRDLASAS +EPEK+DLAKAAQL  E LSLC 
Sbjct: 157 TKTVQFSNLHETTELLQHTIRALRLSKKLRDLASASADEPEKLDLAKAAQLHCEILSLCN 216

Query: 143 EFDLAGVDAVDEELKW 159
           E+DLAG+D VDEELKW
Sbjct: 217 EYDLAGIDVVDEELKW 232

[Close]

BLAST of Carg03438-RA vs. TAIR10
Match: AT1G67930.1 (Golgi transport complex protein-related)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-16
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 0


Query: 87  QFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRFEKLSLCYEFDL 146
           Q SN H  T+LL H++R  R SKKLRDL  A   +P+K+DL KAAQ  FE L++C E+DL
Sbjct: 156 QLSNLHTATELLSHSVRTLRLSKKLRDL--ADFPDPDKIDLTKAAQFHFEILTMCKEYDL 215

Query: 147 AGVDAVDEELKW 159
            G+D +DEE+K+
Sbjct: 216 FGIDVIDEEIKF 225

[Close]

BLAST of Carg03438-RA vs. TAIR10
Match: AT1G06475.1 (unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 29 MDLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG 67
          +++ M+  +VD V +K++ VVEA VLVSTLCFFYLCCG
Sbjct: 53 VEIIMLTEIVDGVVYKVMYVVEAFVLVSTLCFFYLCCG 90

[Close]

BLAST of Carg03438-RA vs. TAIR10
Match: AT5G26790.1 (unknown protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 23/57 (40.35%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 17 WPWRFSLFGRNPM-------DLRMIHFVVDNVFFKIVSVVEAIVLVSTLCFFYLCCG 67
          WP  F+  G  P        +L ++  VVD+V +K+V+  E++ LVS LCFF+L CG
Sbjct: 9  WPIHFTSSGSVPRWLSWRRPELSLLSVVVDDVVWKVVTAFESVALVSMLCFFFLFCG 65

[Close]

BLAST of Carg03438-RA vs. TrEMBL
Match: tr|A0A1S3C499|A0A1S3C499_CUCME (conserved oligomeric Golgi complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC103496309 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.2e-27
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 76  EPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRF 135
           EPRNVVFT+  QFSN H+TT+LL HTIRA R SKKLRDLASAS ++PEK+DL+KAAQL  
Sbjct: 153 EPRNVVFTKTVQFSNLHQTTELLQHTIRALRLSKKLRDLASASADDPEKLDLSKAAQLHC 212

Query: 136 EKLSLCYEFDLAGVDAVDEELKW 159
           E LSLC EFDLAG+D VDEELKW
Sbjct: 213 EILSLCNEFDLAGIDVVDEELKW 235

[Close]

BLAST of Carg03438-RA vs. TrEMBL
Match: tr|A0A0A0KD96|A0A0A0KD96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139240 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.4e-27
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 76  EPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVDLAKAAQLRF 135
           EPRNVVFT+  QFSN H+TT+LL HTIRA R SKKLR+LASAS ++PEK+DLAKAAQL  
Sbjct: 153 EPRNVVFTKTVQFSNLHQTTELLQHTIRALRLSKKLRELASASADDPEKLDLAKAAQLHC 212

Query: 136 EKLSLCYEFDLAGVDAVDEELKW 159
           E LSLC EFDLAG+D VDEELKW
Sbjct: 213 EILSLCTEFDLAGIDVVDEELKW 235

[Close]

BLAST of Carg03438-RA vs. TrEMBL
Match: tr|A0A2P2IXI4|A0A2P2IXI4_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.9e-21
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 67  VRHVWFELSEPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVD 126
           +R V  ELS+P   +  +  Q SN H TT+LL HTIRA R SKKLRDL SAS  EPEK+D
Sbjct: 140 IRRVRSELSDPYKSIHAKTIQHSNLHATTELLQHTIRALRLSKKLRDLISASEAEPEKLD 199

Query: 127 LAKAAQLRFEKLSLCYEFDLAGVDAVDEELKW 159
           LAKAAQL  E LS+  E+DL G+D ++EELKW
Sbjct: 200 LAKAAQLHCETLSMYNEYDLIGIDVIEEELKW 231

[Close]

BLAST of Carg03438-RA vs. TrEMBL
Match: tr|A0A2P2IXJ7|A0A2P2IXJ7_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.9e-21
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 67  VRHVWFELSEPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVD 126
           +R V  ELS+P   +  +  Q SN H TT+LL HTIRA R SKKLRDL SAS  EPEK+D
Sbjct: 140 IRRVRSELSDPYKSIHAKTIQHSNLHATTELLQHTIRALRLSKKLRDLISASEAEPEKLD 199

Query: 127 LAKAAQLRFEKLSLCYEFDLAGVDAVDEELKW 159
           LAKAAQL  E LS+  E+DL G+D ++EELKW
Sbjct: 200 LAKAAQLHCETLSMYNEYDLIGIDVIEEELKW 231

[Close]

BLAST of Carg03438-RA vs. TrEMBL
Match: tr|A0A1R3GLL1|A0A1R3GLL1_COCAP (Golgi transport complex protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25227 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 67  VRHVWFELSEPRNVVFTEPFQFSNFHRTTKLLHHTIRAFRFSKKLRDLASASVEEPEKVD 126
           +R V  ELSEP N + ++  Q SN HRT++LL H+IRA R SKKLRDL +++  EP+K+D
Sbjct: 36  LRRVRSELSEPHNSILSKTVQLSNLHRTSELLSHSIRAVRLSKKLRDLMASAEAEPDKLD 95

Query: 127 LAKAAQLRFEKLSLCYEFDLAGVDAVDEEL 157
           LAKAAQL  + L+LC E+DLAG+D VD EL
Sbjct: 96  LAKAAQLHNDILTLCEEYDLAGIDMVDNEL 125

The following BLAST results are available for this feature:

BLAST of Carg03438-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456343.1	1.1e-26	75.90	PREDICTED: conserved oligomeric Golgi complex subunit 5 [Cucumis melo]	[more]
XP_004145805.1	1.4e-26	75.90	PREDICTED: conserved oligomeric Golgi complex subunit 5 [Cucumis sativus] >KGN46...	[more]
XP_022947438.1	2.8e-22	75.00	conserved oligomeric Golgi complex subunit 5 [Cucurbita moschata]	[more]
XP_022970800.1	2.8e-22	75.00	conserved oligomeric Golgi complex subunit 5 [Cucurbita maxima]	[more]
XP_023533313.1	2.8e-22	75.00	conserved oligomeric Golgi complex subunit 5 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg03438-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67930.1	2.1e-16	54.17	Golgi transport complex protein-related	[more]
AT1G06475.1	2.0e-06	60.53	unknown protein	[more]
AT5G26790.1	1.4e-04	40.35	unknown protein	[more]

BLAST of Carg03438-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03438-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C499\|A0A1S3C499_CUCME	7.2e-27	75.90	conserved oligomeric Golgi complex subunit 5 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A0A0KD96\|A0A0A0KD96_CUCSA	9.4e-27	75.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139240 PE=4 SV=1	[more]
tr\|A0A2P2IXI4\|A0A2P2IXI4_RHIMU	5.9e-21	59.78	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A2P2IXJ7\|A0A2P2IXJ7_RHIMU	5.9e-21	59.78	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A1R3GLL1\|A0A1R3GLL1_COCAP	2.5e-19	57.78	Golgi transport complex protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_252...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03438	Carg03438	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03438-RA.CDS.2	Carg03438-RA.CDS.2	CDS
Carg03438-RA.CDS.1	Carg03438-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03438-RA.exon.2	Carg03438-RA.exon.2	exon
Carg03438-RA.exon.1	Carg03438-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03438-RA	Carg03438-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726	FAMILY NOT NAMED	coord: 20..69