Carg02780-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02780-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_008 : 36676 .. 37950 (-)
Sequence length	378

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTTTGCCTCGTGCTTACTTTTGTTACTATTTCTCCTGTCTCTCCAACTTTATTTACACCCTGTGCTTTAACTTTCCTAGGGTGTAGGCAGCATCCCAAACAAGTTGAGCTTCTGTTAAAACTTAAAACAACCATTGTTGTCTTCTCGATGTCACTTTAGTCAAAGAAAATAGGACGTAAATTGCATTAGACAGAACTATTGTCACGTAATCATGTTTTGTCATATCTTAACTTCGAATTGTAAGATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGGTAAGTTATCAGGCTCCCTTTACTTTAAAATTTAAACTATGGAGGCATGTTTTACTACGATAAGGCCTTCATTGGCAATTAACAACTGCATGCACTCTATGGTGGAGGTCCTGTTTATAATTATTGTGTCCTTATGCTCAGATTTTATGGTATTATTTTTCTTCTGTCATATGTTCTTAAACGTCATTGTACATTCCTTCTGTTATAACGAGTAATTGAACTGCAGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTATTGTATGATTTGTTCCTCTCTGTACGGGTGATAATCTAAGTCAAAACGTAAAGATAAGTGCTTGAAGAAACTGAAAACATGCAGCAGTATTTAGGGATTCTTATTGTGTATTGCTTGGTACATAAATTTTATGATCTAGTATTTAGCTAAGTATATCTGGCACTACAATTGCGCCGGATTCTAAGACAAAGGATGGCCAAACTGTATGATAAACCAAATGTTTCAGGTACTTGGGCACTCCTAAATCACTCACCAAAATAATGCCTCCGTTCTCCTTTCCCACTACCTGTTTAACTAATGATGCCATTGACATTATTTATGAACGGACACTCGATCAATGAATTTCTTTAAATGAACTAGGACAACTCTTAAAATGCTTCATATAAATTTAGATAATCTGATGTATGATTTTCTGCAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA

mRNA sequence

ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA

Coding sequence (CDS)

ATGGATATGGCAGAAATAGGTCATGAAAGGGCCAATTCTCTTGGTCTCAGAACTGCTGATTGCGATCCAATTTCGTCTCGGGAATCAAACATTATTTTCGTTGATGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCATTTATTGGCTATAAAGACATCAGAGTTGTTCACAAGGAGCCCAGACGGCGTGGAGATAAGGCTACGGTATTATGTTTTGTCGAGTTCATTGAAGCAAGATATGCCCGGGCTGCAATGGAAGCTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTCCGCTTACCATCTAACCAACGATGA

Protein sequence

MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQR

Homology

[Close]

BLAST of Carg02780-RA vs. NCBI nr
Match: XP_022977142.1 (RNA-binding protein 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 5.1e-64
Identity = 120/123 (97.56%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIR 60
           MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGY+DIR
Sbjct: 1   MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYEDIR 60

Query: 61  VVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRL 120
           VVHKEPRRRGDKATVLCFVEF EARYA+AAMEALQGYKFDDKKPDSPALKIQFAHFPFRL
Sbjct: 61  VVHKEPRRRGDKATVLCFVEFSEARYAQAAMEALQGYKFDDKKPDSPALKIQFAHFPFRL 120

Query: 121 PSN 124
           PSN
Sbjct: 121 PSN 123

[Close]

BLAST of Carg02780-RA vs. NCBI nr
Match: XP_022936248.1 (nuclear speckle RNA-binding protein A-like [Cucurbita moschata])

HSP 1 Score: 249.6 bits (636), Expect = 5.6e-63
Identity = 119/123 (96.75%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIR 60
           MDMA+IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIR
Sbjct: 94  MDMADIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIR 153

Query: 61  VVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRL 120
           VVHKEPRR GDKATVLCFVEFIEARYARAAMEALQGY+FDDKK DSPALKIQFAHFPFRL
Sbjct: 154 VVHKEPRRCGDKATVLCFVEFIEARYARAAMEALQGYEFDDKKTDSPALKIQFAHFPFRL 213

Query: 121 PSN 124
           PSN
Sbjct: 214 PSN 216

[Close]

BLAST of Carg02780-RA vs. NCBI nr
Match: XP_022939988.1 (RNA-binding protein 2-like [Cucurbita moschata])

HSP 1 Score: 231.1 bits (588), Expect = 2.1e-57
Identity = 110/124 (88.71%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDMAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIR 60
           M MA+ GHE+ANSLGLR  +  PIS++ESNI+FVDGLPTDCTRREVGHLFRPFIGYKDIR
Sbjct: 116 MAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGHLFRPFIGYKDIR 175

Query: 61  VVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRL 120
           VVHKEPRRRGDKATVLCFVEFIEARY+RAAMEALQGYKFDDKKPDS ALKIQFAHFPFRL
Sbjct: 176 VVHKEPRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFRL 235

Query: 121 PSNQ 125
           PSNQ
Sbjct: 236 PSNQ 239

[Close]

BLAST of Carg02780-RA vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDI 60
           M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDI
Sbjct: 117 MGRADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDI 176

Query: 61  RVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
           RVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 177 RVVHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 236

Query: 121 LPSN 124
           LPSN
Sbjct: 237 LPSN 240

[Close]

BLAST of Carg02780-RA vs. NCBI nr
Match: XP_008452749.1 (PREDICTED: RNA-binding protein 2-like isoform X2 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDI 60
           M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDI
Sbjct: 116 MGRADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDI 175

Query: 61  RVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
           RVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 176 RVVHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 235

Query: 121 LPSN 124
           LPSN
Sbjct: 236 LPSN 239

[Close]

BLAST of Carg02780-RA vs. TAIR10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding)

HSP 1 Score: 107.8 bits (268), Expect = 4.8e-24
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 5   EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 64
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 65  EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQ 124
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P  +
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

[Close]

BLAST of Carg02780-RA vs. TAIR10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-23
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 6   IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 65
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 66  PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQ 125
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P  +
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPGQR 230

[Close]

BLAST of Carg02780-RA vs. TAIR10
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 23/75 (30.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 29  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYAR 88
           +NI+FV  LP + T   +  LF  + G+K++R++  +P         + FVEF +   + 
Sbjct: 176 NNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--------IAFVEFADEMQST 235

Query: 89  AAMEALQGYKFDDKK 104
            AM+ LQG+K    +
Sbjct: 236 VAMQGLQGFKIQQNQ 242

[Close]

BLAST of Carg02780-RA vs. TAIR10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 24/76 (31.58%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 29  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYAR 88
           +NI+F+  LP + T   +  LF  + G+K+IR++  +P         + FVE+ +   A 
Sbjct: 157 NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--------IAFVEYEDDVQAS 216

Query: 89  AAMEALQGYKFDDKKP 105
            AM+ LQG+K   + P
Sbjct: 217 IAMQPLQGFKITPQNP 224

[Close]

BLAST of Carg02780-RA vs. Swiss-Prot
Match: sp|F4HWF9|NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 8.6e-23
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 5   EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 64
           ++G  + +S+G    +  P+    SN ++V+GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 65  EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQ 124
           + + R    TVLCFV+F  +  A  A+ ALQ Y+ D+ +PDS  L++QF   P   P  +
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQR 417

[Close]

BLAST of Carg02780-RA vs. Swiss-Prot
Match: sp|Q8H0P8|RBP1_MEDTR (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 29  SNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFIEARYAR 88
           S  ++++GLP+DCTRREV H+FRPF+GY+++R+V KE + RGD   +LCFV+F     A 
Sbjct: 150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFVDFANPACAA 209

Query: 89  AAMEALQGYKFDDKKPDSPALKIQFAHFP 118
            A+ ALQGYK D+  P+S  L++QF+ +P
Sbjct: 210 TALSALQGYKVDEINPESSHLRLQFSRYP 237

[Close]

BLAST of Carg02780-RA vs. Swiss-Prot
Match: sp|G7ID19|RBP2_MEDTR (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.3e-22
Identity = 45/97 (46.39%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 23  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 82
           P+    S+ ++V+GLP+D T+REV H+FRPF+GY+++R+V KE + RG    +LCFV+F 
Sbjct: 145 PLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVDFA 204

Query: 83  EARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
               A  A+ ALQGYK D+  P+S  L++QF+  P R
Sbjct: 205 NPACAATALSALQGYKVDEINPESSYLRLQFSRSPGR 241

[Close]

BLAST of Carg02780-RA vs. Swiss-Prot
Match: sp|A1A6K6|NSRA_ARATH (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-22
Identity = 48/119 (40.34%), Postives = 74/119 (62.18%), Query Frame = 0


Query: 6   IGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 65
           IG +    +G R      + S  SN ++V+GLP++C+RREV H+FRPF+GY+++R+V K+
Sbjct: 117 IGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKD 176

Query: 66  PRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSNQ 125
            + R     VLCFV+F     A  A+ ALQGY+ D+ + DS  L++QF+  P   P  +
Sbjct: 177 SKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPGQR 230

[Close]

BLAST of Carg02780-RA vs. Swiss-Prot
Match: sp|Q6JB11|MEG5_MAIZE (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-18
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 23  PISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRRGDKATVLCFVEFI 82
           P+    S+ ++++GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F 
Sbjct: 31  PLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFD 90

Query: 83  EARYARAAMEALQGYKFDDKKPDSPA 109
               A  A+EALQG+  DD    +PA
Sbjct: 91  NPAQATIALEALQGHVTDDVNVSAPA 116

[Close]

BLAST of Carg02780-RA vs. TrEMBL
Match: tr|A0A1S3BUL5|A0A1S3BUL5_CUCME (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.8e-57
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDI 60
           M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDI
Sbjct: 116 MGRADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDI 175

Query: 61  RVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
           RVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 176 RVVHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 235

Query: 121 LPSN 124
           LPSN
Sbjct: 236 LPSN 239

[Close]

BLAST of Carg02780-RA vs. TrEMBL
Match: tr|A0A1S3BU06|A0A1S3BU06_CUCME (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 6.8e-57
Identity = 107/124 (86.29%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MDMAEIGHERANSLG-LRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDI 60
           M  A+IGHERANSL  +RTA+CDP S RESNI+FVDGLPTDCTRREVGHLFRPF+GYKDI
Sbjct: 117 MGRADIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDI 176

Query: 61  RVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
           RVVHKEPRR GDKATVLCFVEF+EA++++AAMEALQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 177 RVVHKEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 236

Query: 121 LPSN 124
           LPSN
Sbjct: 237 LPSN 240

[Close]

BLAST of Carg02780-RA vs. TrEMBL
Match: tr|A0A0A0L0S1|A0A0A0L0S1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.4e-54
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MDMAEIGHERANSLGL-RTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDI 60
           M  A+IGHERANSL L RTA+CDP   RESN++FVDGLPTDCTRREVGHLFRPF+GYKDI
Sbjct: 118 MGRADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPFMGYKDI 177

Query: 61  RVVHKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 120
           RVVHKEPRR GDKA VLCFVEF+EA++++AAMEALQGYKFDDKKPDSP LKIQFAHFPF 
Sbjct: 178 RVVHKEPRRTGDKAMVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPVLKIQFAHFPFH 237

Query: 121 LPSN 124
           LPSN
Sbjct: 238 LPSN 241

[Close]

BLAST of Carg02780-RA vs. TrEMBL
Match: tr|A0A151R7N8|A0A151R7N8_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040234 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 88/119 (73.95%), Postives = 99/119 (83.19%), Query Frame = 0


Query: 5   EIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHK 64
           +I  ER NS    + D  PIS+ +SNI+FV GLP DCTRREVGHLFRPFIGYKDIRVVHK
Sbjct: 92  DINSERTNSKS--SYDGLPISAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHK 151

Query: 65  EPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPSN 124
           EPRR GDKA  LCFVEF++++ A  AMEALQGYKFDDKKPDSP LK+QFAHFPFRLPS+
Sbjct: 152 EPRRSGDKAMTLCFVEFVDSKCALTAMEALQGYKFDDKKPDSPTLKVQFAHFPFRLPSD 208

[Close]

BLAST of Carg02780-RA vs. TrEMBL
Match: tr|A0A0L9UHW0|A0A0L9UHW0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g233700 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-43
Identity = 87/121 (71.90%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 3   MAEIGHERANSLGLRTADCDPISSRESNIIFVDGLPTDCTRREVGHLFRPFIGYKDIRVV 62
           ++++  ERA+S    T D  PIS+ +SNI+FV GLP +CTRREVGHLFRPFIGYKDIRVV
Sbjct: 95  VSDVNSERASS--KNTYDGLPISAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVV 154

Query: 63  HKEPRRRGDKATVLCFVEFIEARYARAAMEALQGYKFDDKKPDSPALKIQFAHFPFRLPS 122
           HKEPRR GDKA  LCFVEF++++ A  A+EALQGYKFDDKKPDSP LKIQFAHFPFRLPS
Sbjct: 155 HKEPRRSGDKAMTLCFVEFVDSKCALTALEALQGYKFDDKKPDSPNLKIQFAHFPFRLPS 213

Query: 123 N 124
           +
Sbjct: 215 D 213

The following BLAST results are available for this feature:

BLAST of Carg02780-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977142.1	5.1e-64	97.56	RNA-binding protein 1-like isoform X3 [Cucurbita maxima]	[more]
XP_022936248.1	5.6e-63	96.75	nuclear speckle RNA-binding protein A-like [Cucurbita moschata]	[more]
XP_022939988.1	2.1e-57	88.71	RNA-binding protein 2-like [Cucurbita moschata]	[more]
XP_008452748.1	1.0e-56	86.29	PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo]	[more]
XP_008452749.1	1.0e-56	86.29	PREDICTED: RNA-binding protein 2-like isoform X2 [Cucumis melo]	[more]

BLAST of Carg02780-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G21320.1	4.8e-24	39.17	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	3.1e-23	40.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G47580.1	7.7e-06	30.67	spliceosomal protein U1A	[more]
AT2G30260.1	1.0e-05	31.58	U2 small nuclear ribonucleoprotein B	[more]

BLAST of Carg02780-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4HWF9\|NSRB_ARATH	8.6e-23	39.17	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
sp\|Q8H0P8\|RBP1_MEDTR	1.1e-22	50.56	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
sp\|G7ID19\|RBP2_MEDTR	4.3e-22	46.39	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
sp\|A1A6K6\|NSRA_ARATH	5.6e-22	40.34	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
sp\|Q6JB11\|MEG5_MAIZE	1.7e-18	46.51	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of Carg02780-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BUL5\|A0A1S3BUL5_CUCME	6.8e-57	86.29	RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
tr\|A0A1S3BU06\|A0A1S3BU06_CUCME	6.8e-57	86.29	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
tr\|A0A0A0L0S1\|A0A0A0L0S1_CUCSA	1.4e-54	83.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1	[more]
tr\|A0A151R7N8\|A0A151R7N8_CAJCA	1.1e-43	73.95	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_040234 PE=4 SV=1	[more]
tr\|A0A0L9UHW0\|A0A0L9UHW0_PHAAN	4.3e-43	71.90	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan04g233700 PE...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg02780	Carg02780	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg02780-RA	Carg02780-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02780-RA.CDS.4	Carg02780-RA.CDS.4	CDS
Carg02780-RA.CDS.3	Carg02780-RA.CDS.3	CDS
Carg02780-RA.CDS.2	Carg02780-RA.CDS.2	CDS
Carg02780-RA.CDS.1	Carg02780-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg02780-RA.exon.4	Carg02780-RA.exon.4	exon
Carg02780-RA.exon.3	Carg02780-RA.exon.3	exon
Carg02780-RA.exon.2	Carg02780-RA.exon.2	exon
Carg02780-RA.exon.1	Carg02780-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 31..108 e-value: 1.1E-4 score: 31.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 32..103 e-value: 4.3E-13 score: 48.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 30..116 score: 11.52
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 23..118 e-value: 1.2E-17 score: 65.8
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 10..124
None	No IPR available	PANTHER	PTHR10501:SF19	SUBFAMILY NOT NAMED	coord: 10..124
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 30..112 e-value: 4.12124E-31 score: 106.585
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 13..103