Carg01958-RA (mRNA) Silver-seed gourd

NameCarg01958-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_003 : 1370809 .. 1375888 (-)
Sequence length325
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGTGCGATGATTTTTCGTTCGAAGTTTTTGGTTGCTCGAGATGCTGTAAGTAAACGACGTTCCACTTCCAGTGATTTTCCTTTCACTAAACGATATTGTTTCTTGTTAGGTCTTGTAAATACGAAGTTCTTTACGATTTTGTTTAGTCGAAGAGGAATCCAAATCGTTTTATTATTGAACTAGTAACCGTGATTTCTCACTCTCGTAATCCTTGATATGAAAAGTTTTGTTCGTCGATCGGATTAGATTCGGTATTTTAATTGATCGATTTATCTCTTATGATGTGTACGGTCCGATGTCTCAATACTTAATATCTTAGATTTTGCCATTTCGAACTAGCTGCGGCAGTGCTGGTTATCGTGAGTTCAAATTAGACTCCCTGTGAACATATTGTTTCTTCAATCAATAGTCGTGATTGTAGTCTTATGAATCTTAATTGCTTTACGATTTTTATTAGTCGGAGAGGATACCGAATTGTTTATTTAACCAGCGATCGTTATTACTCAGTGTCGTAACTCTGATGATAAAAAGTTTTGTTGTTCGTCGATCAAATTAACTTAGGTGTGTTAGTTGATTGATCTGAATCATATATCGATTTGTCTCTTGTGCACGATTCCGATGATTCTCTCGATATAAGTTATCTTATGTTTTGAATAAATCGCTGTAGTCCTTGTTCTTCTGAGTTTAAATTAAAAATTATTCCTCGACGAGCGTTCAGATATTTATTTTTTATCTCAGAATTTTGAAGACGATTTGGCGTCGGGAGTGATTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGTACGTATTTTGATGATTTTACACCGTGATACTCTTATAATCTTTTATAAAGTTCAAATCGTGAAGCAAGTACTTCGAAAACCTAGCAAACTTCTCTGAACTTTTTTCTTGCTAATTTATTTCTTTTTTGTGCATTAGAACTGTGATACTTTTCGATTTGTTGAATATTATGTCGTAGAAGCTTGCACTGATTCATTAGATTTCGTTCATTCGAGGCTTGAGTTGTGTTTCTTTTTAGAAAAGGAAAAGATAAGAGTTACTTCTGCCTATCAGCATTGTGATCTGAGTCTCGGTTTTATTCATTTAGGAGCTCTCTGGTTGTAATATTATCTCAAATATTTGGTATAAAACAACTTACCTAAAATAAGTTTTTTAAGCATGCTATTTCTCTTATTAACTTCTTAGTCATTATTTTTCAATAGTTCACGTCTAACCGTCTTCCAGTAGTCTTAATTTATTGTACATAATTATATTATCTGAAATATCTTATACAAAACAATTTTCCTGCTTCTCGTTAGTCCTAATTGCTTCTAGGCTTCAACTCCCAAAAAAAATTATTGTTGGTTTAAATATTCTCTTCCTTCGACGTTCGACATGTTATTGTTTCTTAATAGTCTTAATTTCCTTTAGGTTTATGTTGCTTTTTTGATGTTTTTCGTCATATATAGAATGGCTTTTTTTCGTTATTTATTATTAATGTACTCTGTTCAATCTATACACTATGATACTTATGGAACAATTTAAGTTGCTTAAAATACCATCCTGAGTAAATCATATGCCAGTTAAGGATACAAAATCAGAAAATTCCAGTTATCAATCAGCCTTCTTTTGATTATGACTTTATTGCTCCCCGTGCTTATCCTAAGTTCCTGACACTTCAATAAATAAATAAAGAAAGAAAAGAAAGAAAAGAAAGAAAAGAAAAGAAAAAGAACTGAATTGAAGTTGAGAAAAAAAAAAAAAAAATTCCAAGAGCTTTAGTGAAGGGAACAATGAAAGATCTTGGGAAGTCTCAAAACTGCGACATCCTAAAACTTCTCAATTTTCTGGATTTATCATTGAGTGTTCTTTGGTTTCTTTTCCATCAAAATTAGCACTTAACCGTACAAACTACAGTACCCTTATGCTTGAGAGGGTTGCCAACCAAAGGTAGCTCCAAACATTTTCGGATTAAGAGAGTGAGGCAAAATAGTGATGCGACCAAGGATTCTGGTTTGGAGTATTTAACTTTCTTGTTATTAGTAATCTCTTCTACCTTCTCTTGAATTAAGTTAGATTAGAGAGATTGTTACAGTGGCAGACAAGTTTATTCACTTTCCATCCTAGGTGGGTCGTCAAAATACTCATTTCAAGCAGATGTGCTAATTGAAAATAAAAAATGTTGTGTAAATTTTATCTTTTTTTTTTTTTTTGCACAATTAGATCGAGATAAGAAAGTCCTCCAAGAATTAGTGTTGGAATCCCCATAATCTTTAATCAAAACAATTGAAGAGTTGAAAATTTTGATGGAACAAACTTTTAAGGGATTTGAACTAAAAACTCACTTTTTCCTTATCCTTAGTTCTAAAGAAGAGATCCTCGTTTATTTTCATACAGATGAGAGAACTTGTAGATATCAAGTCTTCTGATCATTTTGGTTGATATATATTTTTCTGAGGAAATTATGATTGATATATTTTATATATTGTCTAGAGGGGAAATATGTATCTCGGTCTTGCGCTATATAATATATATTTTTTTTTATTGAGAATATCCCACTCACATCTTCTCACATGTACAACACTTAAGAAATAGGTTGCATGTACAGTGTCATCGAAACCAAATAATATTCATATAACGCAAGACAATTTAGGTAACTCTTAACTTAAGTTTTGTGCATTCTCTAATAAACATATTTGACCGTCTAAGTGATCCGAAGCACTTCCTAGTTCCTATTCAGATGTTTGTGTTTGGTTACTATTTTAAAACATTTTTCAATGAAGTAAGAACACTATTTTCAAAAAAAGAAATTAGTTCATGTCTTTTTTTCTTTTTTTTGTTCAACACTTTCTTTGTCAAACTTTCGTTCACTAATTCTTCTCTTTCTAATGTCTTTTTTGACAGTTTTTTCTCGTTAATTTCTCTTTTCGCACCATTTCTTTCTCCCGCTTCTCTCCCATTTTATCTCACTAATTTTCGTGACACTACCTTCCTTCTCGAATTTACTCTCTTCACACACACTTGTTTGTACTAGTCTCTCTACAGTAACGAGTCTCTTGTTAATATCTCTCTGCCAGTATTCTCATTTGTTTCATTTTTGTGATTTAGTTTTAATAATTTTAACATATTTGATTGTGGTGATATGTGAATTCTAGAAACTAGAAGCATCTATAGTCTGTATTTTACAAAGTACTTGTAGATGACTAAAAGTATGTTGCGAAGACTTAGTATTTGGTTAAAGTTTTTAGAGTGATTGTACCTATTAGGAGTGTCTTTTAACAACCTTGATTATCAAATGTGGTTTGAGAATTCTAAAATAGATAGAAATCTCTTTAGATGAATCATTTAACTAATCTTTAAAAAGTTAGTATGATGAATACTTGTTTTATACGCTTCTATACTTGCATTTTACATGTCCGAAGTACTCCATCAACTTATGGTCATCAAGGGTGTAACTGATTTGGTTCGGTTTGGGTGTCTAATTGAAGCCATAAATGTTATGGTCAAATATATATTTAGAAGTTGAAATTGCTGAACTGCTTTTGTGAGTTTAGAACATGCATCAAATGATTCAAATTCAATTTGGTTAAAAAAAATTCAAATTCAATTTTGACATGGATATGACAAAAATGATTTTAACCATTTTTAAATTTGCATGATGAATTTGATAAAATTCCTGGTTACTTTGACCATGAAAGATTGATCAAAAGGGCTGTGTACACATTTCTTGTTCCTAGTAATATAGGTTTGCGAGTCATGAGCGAAACTTAAACGTTGTTAATAAAACATTGAGACTAAAAGCTTCTGCATGTTGCTTTATTGTGTGCATACTTTTCGATAGTTTACATCTTGCACTATATTTTAGGAATGAGTTCGAACCAATATGCAACTGGACTTCGCGTTGATGTTGAATTTGAGGCATAAAGCTTTGAAGCGAAGTAATTGCAACTGCAACATGTCGCAGAGGTTTGTTCCTCTACCAACGCTTTTCTTTCTTTTTCTCTTTCTTGCACATCTACAAAGTCAGAAAATTCTCAAAATTATTCATATTAATAGAACAAGAATTCTAAACAAAAAGATCAATAATCTTAGCAACAATTTGGTGATAGCATTTCAGAAAGCTCGTAATGAGATAATTTCAAATTTCTTGCTCAAAACAATTAAGGTAAATATGATGTGTTCCCCTTATGTTTATACAACTATTTGGCAGAAATTTTTTCTTAATAAAAGGGCTACACGGTTCAGTTTAGTACTAGGCTTTATACAATCTTTTGTTCCGACCATTTAACACGATTATACGGCATAAGCGTTCATATGTAATCTTTAACTTTCAAGTGGGAGGGTGCTATATAGGATTTCTATTTTTTTTCTAAAAAAATAATTAAATAAAATAGAAAATTTTAATTTACAAATGTATTTCTTTCATTACAAAGTACTTGAAGTTTAGGAAATATTTTTAGAATTGGAGATAAACTTAAAAGAGAATGATGCAACAAAAATTGAAAGATGAGTTAAGAAGATTTCCTAGATTTAAATACTAGAACAATATTAAATAAGAATTTAGATTTAAAAGTTCAAGTAGAAATAAGTAATCAAGGGAGAGAGATTTTAATAGAAATAAGTAATCAAGGGAGAGAGATTTTAAACGTTTGAGAGAAAACTTATAAAGAGCAATATAAAAAACAAGTAGAAGTAATCCAGGAGAGAGAAGAATTAGATTGAAAGCAAACGTGACTTTTAGCCTAATTTTAGGATAGGACAAGATAGAGTGAAAGGGTTTCTTATGAATTATTCATTAACTCTGTAGTGAAACCTATTTCCTTCGACCTAACCATAAAACACGAGAATTAGACGTCCATTTTTTTTTATTTCCATTTATACTTCATATCAATTAATGTTATTGATGTCTTTATGTATATGGGTAGATGTCTAAGAACCGACGCTGACATAATCTCCTCTTGCAGTATGACCTAGTGTTATCAACTACGACGATTAGAAGTTCAAGTTTGAATTTCTGGGAATACTAGATCAGCGGAAAGGGAGAGCACGCAC

mRNA sequence

ATGAGAAGTGCGATGATTTTTCGTTCGAAGTTTTTGGTTGCTCGAGATGCTAATTTTGAAGACGATTTGGCGTCGGGAGTGATTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGAATGAGTTCGAACCAATATGCAACTGGACTTCGCGTTGATGTTGAATTTGAGGCATAAAGCTTTGAAGCGAAGTAATTGCAACTGCAACATGTCGCAGAGTATGACCTAGTGTTATCAACTACGACGATTAGAAGTTCAAGTTTGAATTTCTGGGAATACTAGATCAGCGGAAAGGGAGAGCACGCAC

Coding sequence (CDS)

ATGAGAAGTGCGATGATTTTTCGTTCGAAGTTTTTGGTTGCTCGAGATGCTAATTTTGAAGACGATTTGGCGTCGGGAGTGATTACGTGGATGCGTGTTTTGAATTGCTACCAGAAGGTCCGGAACATATTTATTGGAATGAGTTCGAACCAATATGCAACTGGACTTCGCGTTGATGTTGAATTTGAGGCATAA

Protein sequence

MRSAMIFRSKFLVARDANFEDDLASGVITWMRVLNCYQKVRNIFIGMSSNQYATGLRVDVEFEA
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg01958Carg01958gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg01958-RACarg01958-RA-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg01958-RA.three_prime_UTR.2Carg01958-RA.three_prime_UTR.2three_prime_UTR
Carg01958-RA.three_prime_UTR.1Carg01958-RA.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg01958-RA.CDS.3Carg01958-RA.CDS.3CDS
Carg01958-RA.CDS.2Carg01958-RA.CDS.2CDS
Carg01958-RA.CDS.1Carg01958-RA.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg01958-RA.exon.4Carg01958-RA.exon.4exon
Carg01958-RA.exon.3Carg01958-RA.exon.3exon
Carg01958-RA.exon.2Carg01958-RA.exon.2exon
Carg01958-RA.exon.1Carg01958-RA.exon.1exon