Carg00296-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGAGTTACAGCCTTCAGGAAAAGTTGTTGCCATGTAGTTTAGCAAGAAAGGTAGTGGTAGTGGTACTGGTGGGTTCAATGGCCTTGCTTTCTGAGTTTCTGAATATCACAATATTCTTGGTCACGAGGTCTTTTTCGTTTTTCATGCGTACGTGCTCATTTATCTTTAAAACCTTTGTTGTTGTTCAAACTTGGTTGGAGCTGTTGAAGACCTTGGTCAGTTTTCACTTGAATATATTTAGGACCACTTCGATGTGGATAATTGCGTTCGTCTCTCTTCCTGGACGAATTGTAGTTGCTTTACAGAGGGAAAGGCAGGTTAGCCTTTTTGACCTATTGTTTATTGATTGCCTTATGTTCTTGTTGACTTATGATTTCTGTGTTTCTTTGGCTTTCTTTTCTCTGTTTTGGTTCTAGAGATGTCTCTCGAGAAAAATATGTTTGAAGAAAATATACCTCAACCTACTATATTCGTTTTAGACTTAAATTTTTATATGCAACATTATGGTGATTGTCGTTTGCTTGCGTGTAGCAGCTAGCTGGGTACTCAAAGTACACTTACATGACACATTTTTACAAGTTTTCTAGCTATAAATGGATATGGTATTGAAGTGGTAAAATTTGAAAACATCAAATAATTACAATTGTAACCAGCAATCGGAATTTAGTTGAGAATCCTTAATATTCATAGCAGAAAAATTATGTCAATAAGGTTTTCAGAACTTGGAAAGGGATGAAGAAACTAACCATTGAGTTCTTTGCAACGTGAGTTATTGAAACAATAATTTGAACTTTTTTTCAATTATTACCAGTCAACTGGAGAATTATTGTTCAAGCATTTGTTTATCCATTTTTCTTTTCTTTGTCAGTCTCATATATTTTTGGTATGATTATAGCAGAAAGTTCCCATCTATGAATTAGATTTTGTTCCAGTGTTGTCTGTTGATGGCTTTTGGGATCTCTACTATTCATGAAGTAATTGGAGTATTGGAGTACCAAGTAGGCTGCTTAGACTAATTCTGGTCATTTATGAATTAGATTTTTTTTTCTTGATAGTGACTAATTTTGTGAAGTTGCAACTAAATTTACAATTTCTGGAAATTGAGTTTGAAAATGTTTTATGGGAAAGAAAGGAGTTTCAAAAACATTTTCAGGCTGCTATGAAAGAGCAGAAGGTGGTGGAATTGATGTTGGATGAACTTGAAATGATACATGAAAAGGCGACCGACAAAATTTCACACTTAGAAAGTGAGGTAATGACCTGTCATAACTTCTTTAAGCTCTAGCTGCTGTACTAAATCCTGCCCTAAATGTCATAATTACATTGTGGAAGATTGAAACTGAGAGTGACTTATCATAGTTCTGATAAGAAGTGGACAGAGGAATCTATGGTATATAGGAGGCAGTTGAACTTTGACATCAAAACCGTAGTTTACTTTTTTTGAGCTGAAGACTTTTATATCTGTGAAGAACTCAAGGACACTCCTTACAATATACCGGAAAATAGAAACTTTCTCACCCGCACACATACACACAGAATGACACAAAGTTATTATGTGAATGTACCTTTAATCCATTAGAAGGTCATGCAACAGTGTTTGCTGTGTTGTTGTCCTATGCTCCATGGAAATATATTCGAGTTCAATGAAACACAGATGTAACTTGATTCCAAGAAAGGAAAATTTCGTTTTTTTCTTTTTTCTTCAGTAGGTTGAGAAGCTGGCTTATAAAATCATCAGGAAAGCTTTGCGTGCGTCAAACCATGTATTTCATTTATATATTTATTTTACTTTATAGATATACAATGCAGCTTGCTCAGTTGTGATATGTGAAGTAATTACACGCACATTGCATGAAGCCAAGGGAATCGTCCGTTCCTATTTTTACATCACAATTTTCCTATTCAAGGGATCATTCTAGTTTTTTATTTCACTCTTGACAATTTGACTCCCTAAATAACCGCACGTAGAACCAACTATTGAGTCCACTCCCACTACCAAGTCTACTCGTACAATTGATTCCAATCATGAGTCCACATGTAATATTGATTCCAATCATGGGTCCTCTCCCGCTATCGTAGAGTCATCAACTGAACCATTTATTCCACCTCCACTGCCAGATTCATTGTTCTCTTAGGTATATGTTAGAAGGAAAGCCATTTGAGAATTGATACAAGTCCAAACATCCAATTCGACTCAAAATGAAGATGCAACACAGGTACCAATAGATTATAGACCAGTAGCTTTCTGAAAAACTACTAAAGAATGCACAAAACGACCCTTATACCCCTATCAAATTATATCTCTCTTGAAAAACTATCCCCCATCACACAAGAGTTTTATTATGAGTCTGAATTCAGTTGTTATACCTCATACAGTTTTTCAAGTTTTATCCAAAAGAGAATGACATGATGGTATGGGAGAATGACTGATATTTTATCAAGAAAAAATTGGAGAAAGGGATAGTATGCACTAATTATGTGCCCTCACAGCTTCAACTGACAGATGTACTAACAAAAGAACTTCACAGCTCAATGTGTCACGAGTTAGTGGGGATAGATGAACAAAAGGACTTCACAGCTCAATGTTTCATGAGTTAGTGCATCTATTCCTTAGTTTGAGAGTAGTGTTGAAGGGATGAACTTAATTTAAGGAATATTTGTGTTATTCGTAGACTTAATTTAAGGAACATTTTTGCAATCTCATTAAATAAAAGGTAAATGTATTTTTCTGAATTGTCACCTAGTACCTGAAGATTTAGTTAGCTTTTCTGTATTATAAAGGTAGGTACATGGAAACTATTAAGAAATTGCCACCATTACTACAGAGTTTCTTTGAAATTTCAGTTGTTCCAAGATTTACTGCAAAGGCAGGCTCCTGCAGGCTGCAGCCATATGATTTCTCTGTGGTGTGAATTTAGATTAGTGATGTGCATTGACTCAGTGGAATAGGATGTCTAATTATTTACTAGTCCTCTGAGTTTGCCCTAAATTAGACTACAGGTAGTTTTTGAAGTATTTCTGGGCTTATAGTTAAAATCCCTTACCATAACAGTATGCGCCACTCTTCTTGTGAATACTCTTAATCATTGAATAGGTTTTTCCACCAAGGTTATGTAAAGGCTGGAAATCAATTTTAGCTATCTATTGTAGAGAAGAGGAAAGACAGCGATAAATGGGTTACGTCATAACCTTAACTGTTGAGTTTTTCTTGTAGTGTATCTTCTTGCTTTTTGAAGTCGTGTGGTATGTTAATATTAGTTTAGATCTCTTGCTTCAAATAAATAGGCGTAATTTAATCCAACAGCTGCATAAATTGAGAAACGAAAATCTTCGACTGCAAGAAATCAAGGGTAAGACATATTGGAGCTTAAAAGGTCTTGATAACAAAGGTGAAGCACAAAATGCTGGCAGACTTGACAGCGACATTACCTTTGGTATCTCATCATGCTCATCCATCTATAGTGGCAGCAGCATTGTTCAATACCTCTTTCAAAGTGATATTTGGAAAGACGATAATATACCTAAAGCAAGATTGATCGAACTTTTAGAATCTGGGTTAAAATCTGGTCTCCGCTCTCTTAGTTCTGAAGTATCAAAAGATGAAGATGATAAAGATGTCGCCGAAACTCTTGATGAACAGAGAGAGATTGCGATGTCCCGAAGTCTATTCAGTACCTTGTTGTCACTTTTGGTTGGAATGATTATATGGAAAGCTGAAGAGTCTCACTTGTGCCTGGTTAGCATCTCATTAAAGAGCGTTGTTGAGTTTTTCACGACCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACTTGCTTACCCGATGCTGCCAAATATAGCTCGTTCGCTTGTTCTTCTGACCTCGAGGTTTGTTGGACAAATAGTGGAATGGTTTGGTTTCTCCATTTTCTGATCCAATCTAAACTACTTCCTGCAACTCGAGAGGTACATCACCTAATCCCATTAGACATTGGATCATAAAACTTTATCTTCTAGTCGTGAATTTTCCACGTAGCATGCGATACATAGGGGTTTAAACGTTGTTTATTCATCTTTACCATGATCTCAATGAGAATTTTTCAATATTGTTTATAACTTGTACGTGGGTTAGACTATCTACTTTAATGTAACTTATTTGTTTGTTCACTTCTTCTCTGACTATGAGTGATCCGTTCTCACGTCTTTCCAAGCTTTATGCAATTGATTAAATTTCTATATAGAAAGCCCACAACTATGAGTCATCACATTTGGGGACTTTTATGATGTATTGGGCTCTATCATTGGATCAAGCCGTGGGTGCTGATGCTCGTCTTCACTACCATAATTTCAGCAGGTAAAGCAAACAAACTAGTTGGATATGTGTTTAGTATTTATTTGACTTGTCTTCTAAATATTAGAAAGTTATTTACTATCTATTCTTTAGTTGAATATTCAACCTATGCATATTATGTTGAGGATTATTGAGAGAGTAGTCCAGTCTCACGTGGGCTAATTAAGAGGAAGATCATGGGTATATAAGTAAGGAATACTATATCCATTGGTATGAAGCATTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGTTTATGCTCGAAGTGGACAATATCATACTATTGTGGAGGTTCGTGATTCCTAACATATTATAAAAAAAAACATACAACTCGGATAATTATTGGATACGTATTGAATATTCTGAATAGTAATATACATACATTAAAAGTAATACATTTCGAGAGTAAGATAAATCTAAGTCATTTTTAGTTTTTTTTTTAAAAAAGGTTGAGGTCGTTTGTGCTTTTGCTGGCCTACATGGGTCGG ATGCTGAGTTACAGCCTTCAGGAAAAGTTGTTGCCATGTAGTTTAGCAAGAAAGGTAGTGGTAGTGGTACTGGTGGGTTCAATGGCCTTGCTTTCTGAGTTTCTGAATATCACAATATTCTTGGTCACGAGGTCTTTTTCGTTTTTCATGCGTACGTGCTCATTTATCTTTAAAACCTTTGTTGTTGTTCAAACTTGGTTGGAGCTGTTGAAGACCTTGGTCAGTTTTCACTTGAATATATTTAGGACCACTTCGATGTGGATAATTGCGTTCGTCTCTCTTCCTGGACGAATTGTAGTTGCTTTACAGAGGGAAAGGCAGTTGCAACTAAATTTACAATTTCTGGAAATTGAGTTTGAAAATGTTTTATGGGAAAGAAAGGAGTTTCAAAAACATTTTCAGGCTGCTATGAAAGAGCAGAAGGTGGTGGAATTGATGTTGGATGAACTTGAAATGATACATGAAAAGGCGACCGACAAAATTTCACACTTAGAAAGTGAGCTGCATAAATTGAGAAACGAAAATCTTCGACTGCAAGAAATCAAGGGTAAGACATATTGGAGCTTAAAAGGTCTTGATAACAAAGGTGAAGCACAAAATGCTGGCAGACTTGACAGCGACATTACCTTTGGTATCTCATCATGCTCATCCATCTATAGTGGCAGCAGCATTGTTCAATACCTCTTTCAAAGTGATATTTGGAAAGACGATAATATACCTAAAGCAAGATTGATCGAACTTTTAGAATCTGGGTTAAAATCTGGTCTCCGCTCTCTTAGTTCTGAAGTATCAAAAGATGAAGATGATAAAGATGTCGCCGAAACTCTTGATGAACAGAGAGAGATTGCGATGTCCCGAAGTCTATTCAGTACCTTGTTGTCACTTTTGGTTGGAATGATTATATGGAAAGCTGAAGAGTCTCACTTGTGCCTGGTTAGCATCTCATTAAAGAGCGTTGTTGAGTTTTTCACGACCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACTTGCTTACCCGATGCTGCCAAATATAGCTCGTTCGCTTGTTCTTCTGACCTCGAGGTTGAGGTCGTTTGTGCTTTTGCTGGCCTACATGGGTCGG ATGCTGAGTTACAGCCTTCAGGAAAAGTTGTTGCCATGTAGTTTAGCAAGAAAGGTAGTGGTAGTGGTACTGGTGGGTTCAATGGCCTTGCTTTCTGAGTTTCTGAATATCACAATATTCTTGGTCACGAGGTCTTTTTCGTTTTTCATGCGTACGTGCTCATTTATCTTTAAAACCTTTGTTGTTGTTCAAACTTGGTTGGAGCTGTTGAAGACCTTGGTCAGTTTTCACTTGAATATATTTAGGACCACTTCGATGTGGATAATTGCGTTCGTCTCTCTTCCTGGACGAATTGTAGTTGCTTTACAGAGGGAAAGGCAGTTGCAACTAAATTTACAATTTCTGGAAATTGAGTTTGAAAATGTTTTATGGGAAAGAAAGGAGTTTCAAAAACATTTTCAGGCTGCTATGAAAGAGCAGAAGGTGGTGGAATTGATGTTGGATGAACTTGAAATGATACATGAAAAGGCGACCGACAAAATTTCACACTTAGAAAGTGAGCTGCATAAATTGAGAAACGAAAATCTTCGACTGCAAGAAATCAAGGGTAAGACATATTGGAGCTTAAAAGGTCTTGATAACAAAGGTGAAGCACAAAATGCTGGCAGACTTGACAGCGACATTACCTTTGGTATCTCATCATGCTCATCCATCTATAGTGGCAGCAGCATTGTTCAATACCTCTTTCAAAGTGATATTTGGAAAGACGATAATATACCTAAAGCAAGATTGATCGAACTTTTAGAATCTGGGTTAAAATCTGGTCTCCGCTCTCTTAGTTCTGAAGTATCAAAAGATGAAGATGATAAAGATGTCGCCGAAACTCTTGATGAACAGAGAGAGATTGCGATGTCCCGAAGTCTATTCAGTACCTTGTTGTCACTTTTGGTTGGAATGATTATATGGAAAGCTGAAGAGTCTCACTTGTGCCTGGTTAGCATCTCATTAAAGAGCGTTGTTGAGTTTTTCACGACCATAAAGAATAAACCTGCCTTGGATGCTGTTGCTCTTTTGAGCTTCAACTGGTTCATACTTGGAATACTTGCTTACCCGATGCTGCCAAATATAGCTCGTTCGCTTGTTCTTCTGACCTCGAGGTTGAGGTCGTTTGTGCTTTTGCTGGCCTACATGGGTCGG MLSYSLQEKLLPCSLARKVVVVVLVGSMALLSEFLNITIFLVTRSFSFFMRTCSFIFKTFVVVQTWLELLKTLVSFHLNIFRTTSMWIIAFVSLPGRIVVALQRERQLQLNLQFLEIEFENVLWERKEFQKHFQAAMKEQKVVELMLDELEMIHEKATDKISHLESELHKLRNENLRLQEIKGKTYWSLKGLDNKGEAQNAGRLDSDITFGISSCSSIYSGSSIVQYLFQSDIWKDDNIPKARLIELLESGLKSGLRSLSSEVSKDEDDKDVAETLDEQREIAMSRSLFSTLLSLLVGMIIWKAEESHLCLVSISLKSVVEFFTTIKNKPALDAVALLSFNWFILGILAYPMLPNIARSLVLLTSRLRSFVLLLAYMGR
BLAST of Carg00296-RA vs. NCBI nr
Match: XP_022941541.1 (uncharacterized protein LOC111446814 [Cucurbita moschata]) HSP 1 Score: 512.7 bits (1319), Expect = 1.1e-141 Identity = 277/288 (96.18%), Postives = 278/288 (96.53%), Query Frame = 0
BLAST of Carg00296-RA vs. NCBI nr
Match: XP_022935771.1 (uncharacterized protein LOC111442593 isoform X1 [Cucurbita moschata]) HSP 1 Score: 436.4 bits (1121), Expect = 9.8e-119 Identity = 257/367 (70.03%), Postives = 280/367 (76.29%), Query Frame = 0
BLAST of Carg00296-RA vs. NCBI nr
Match: XP_023536568.1 (uncharacterized protein LOC111797700 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 435.6 bits (1119), Expect = 1.7e-118 Identity = 256/367 (69.75%), Postives = 280/367 (76.29%), Query Frame = 0
BLAST of Carg00296-RA vs. NCBI nr
Match: XP_022976798.1 (uncharacterized protein LOC111477072 isoform X1 [Cucurbita maxima]) HSP 1 Score: 421.4 bits (1082), Expect = 3.3e-114 Identity = 252/367 (68.66%), Postives = 278/367 (75.75%), Query Frame = 0
BLAST of Carg00296-RA vs. NCBI nr
Match: XP_022935772.1 (uncharacterized protein LOC111442593 isoform X2 [Cucurbita moschata] >XP_022935773.1 uncharacterized protein LOC111442593 isoform X2 [Cucurbita moschata] >XP_022935774.1 uncharacterized protein LOC111442593 isoform X2 [Cucurbita moschata] >XP_022935776.1 uncharacterized protein LOC111442593 isoform X2 [Cucurbita moschata]) HSP 1 Score: 421.0 bits (1081), Expect = 4.3e-114 Identity = 244/348 (70.11%), Postives = 267/348 (76.72%), Query Frame = 0
BLAST of Carg00296-RA vs. TAIR10
Match: AT5G45310.1 (unknown protein) HSP 1 Score: 105.9 bits (263), Expect = 5.5e-23 Identity = 102/347 (29.39%), Postives = 160/347 (46.11%), Query Frame = 0
BLAST of Carg00296-RA vs. TrEMBL
Match: tr|A0A1S3B9G5|A0A1S3B9G5_CUCME (uncharacterized protein LOC103487633 OS=Cucumis melo OX=3656 GN=LOC103487633 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99 Identity = 212/291 (72.85%), Postives = 238/291 (81.79%), Query Frame = 0
BLAST of Carg00296-RA vs. TrEMBL
Match: tr|A0A0A0KWK5|A0A0A0KWK5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242360 PE=4 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 2.6e-99 Identity = 213/296 (71.96%), Postives = 241/296 (81.42%), Query Frame = 0
BLAST of Carg00296-RA vs. TrEMBL
Match: tr|A0A251P221|A0A251P221_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014600 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 3.5e-72 Identity = 168/348 (48.28%), Postives = 232/348 (66.67%), Query Frame = 0
BLAST of Carg00296-RA vs. TrEMBL
Match: tr|A0A2P6PBF9|A0A2P6PBF9_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0215151 PE=4 SV=1) HSP 1 Score: 273.1 bits (697), Expect = 9.5e-70 Identity = 164/340 (48.24%), Postives = 218/340 (64.12%), Query Frame = 0
BLAST of Carg00296-RA vs. TrEMBL
Match: tr|M5WAX0|M5WAX0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa007274mg PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 3.1e-68 Identity = 163/346 (47.11%), Postives = 227/346 (65.61%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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