CSPI07G19770.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTACTGAAATTTTGAAATCAAGTTCAAACCCAGCCTCTTCACCCTCCATAAGTTTCCAAAAGCACATTTCCCATAAAGCAGTTAGCGCCATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGTATGAATAGTTAGACTCTAAAATATGATTTAAAATTTTCGTTATTGTTTTGCACGATCACTAGGTCTATTATATATTCATGTTTCAGAGAGAATTTCATACTAACGTGGTGTTGTGTCCAACATACTCTAATGCTTAAATATAGTGCCGAGTATACCTTATATTAGAGACTTTTGTTGTGTTAATGGGGAGAGTCTAATAACCTATTAGTTGGTTTAGGATTTCTTTATCTCTTTTTTTGAAGGGGGAGTTGTCTCGGCTTTGTTAGTTCCATTTTACGAAGCAATCTTTTATTTCCTCTTTTGAGATCTATGTTCATGTGATTGGGGCCCTTCAATTTCAACTCTTATAACCATTCTTCACCATTCCTTAATTAACAAAACTTAAACTTCAAACTATTCTTTAAATTAACTCTCATATATATACACATGTAGTTTCTTCCTTAATGTAACTTGAACAAACTAATGCTAGAATTAACTTAGCTAATTATGGGGTTTTTTTTTTTGTGTTTTTAATTTTCAGGATTAATTGATGATTATGAGAGAGGATTTGATCAGAAGAGACCAGAAATGACAGAATTCTACCTATAAAGTTGGAGAAAAGTACTACATCATTATATTATTATCATATTATCATATATAATGCAATAAAATAAAACTAGCTGGAATGGAATCTAATCCCATGGATTTTTAGATTCCTT ATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGATTAATTGA ATGGTAACACTTAGAGCAGCCATTCCAAAGCTTGGAGCTGTACTATTGTTTGTATTTTTGCTTCTTCAAGTCTCAAAGGCTACAATCTCATGTAGTGATGTGACAAAGGATTTGATGCCATGTGTGAGTTATCTTATGAGTGGTAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAAGTAGTGCTGACAAGAAGGCTGCATGTGAATGCATTAAGTCAGCTGCTAGTAATGTGAATTACAATGTTAAATTGGCTCAAGATCTTCCTTCCAACTGTGGCATTAGTCTGCCTTTTAGCATCTCTGCTGGCATTGATTGTTCAAAGATTAATTGA
BLAST of CSPI07G19770.1 vs. Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=3 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 2.3e-25 Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22 Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 5.3e-22 Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 9.0e-22 Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 8.4e-20 Identity = 51/116 (43.97%), Postives = 71/116 (61.21%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TrEMBL
Match: A0A0A0K657_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430200 PE=3 SV=1) HSP 1 Score: 224.9 bits (572), Expect = 5.1e-56 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TrEMBL
Match: M5XL89_PRUPE (Non-specific lipid-transfer protein OS=Prunus persica GN=PRUPE_ppa013464mg PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31 Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TrEMBL
Match: B9HPQ3_POPTR (Non-specific lipid-transfer protein OS=Populus trichocarpa GN=POPTR_0009s03020g PE=3 SV=2) HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30 Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TrEMBL
Match: A0A067J9E1_JATCU (Non-specific lipid-transfer protein OS=Jatropha curcas GN=JCGZ_05250 PE=3 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30 Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TrEMBL
Match: W9SEV5_9ROSA (Non-specific lipid-transfer protein 8 OS=Morus notabilis GN=L484_001290 PE=3 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 3.7e-30 Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TAIR10
Match: AT2G18370.1 (AT2G18370.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 116.3 bits (290), Expect = 1.3e-26 Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TAIR10
Match: AT5G01870.1 (AT5G01870.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15 Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TAIR10
Match: AT3G08770.2 (AT3G08770.2 lipid transfer protein 6) HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14 Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TAIR10
Match: AT5G59320.1 (AT5G59320.1 lipid transfer protein 3) HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14 Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. TAIR10
Match: AT5G59310.1 (AT5G59310.1 lipid transfer protein 4) HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14 Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. NCBI nr
Match: gi|449436232|ref|XP_004135897.1| (PREDICTED: non-specific lipid-transfer protein 8-like [Cucumis sativus]) HSP 1 Score: 224.9 bits (572), Expect = 7.3e-56 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. NCBI nr
Match: gi|659122587|ref|XP_008461223.1| (PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo]) HSP 1 Score: 205.7 bits (522), Expect = 4.6e-50 Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. NCBI nr
Match: gi|596011376|ref|XP_007218611.1| (hypothetical protein PRUPE_ppa013464mg [Prunus persica]) HSP 1 Score: 143.7 bits (361), Expect = 2.1e-31 Identity = 73/111 (65.77%), Postives = 90/111 (81.08%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. NCBI nr
Match: gi|645250815|ref|XP_008231388.1| (PREDICTED: non-specific lipid-transfer protein 8-like [Prunus mume]) HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31 Identity = 73/111 (65.77%), Postives = 89/111 (80.18%), Query Frame = 1
BLAST of CSPI07G19770.1 vs. NCBI nr
Match: gi|566186027|ref|XP_002314213.2| (hypothetical protein POPTR_0009s03020g [Populus trichocarpa]) HSP 1 Score: 140.2 bits (352), Expect = 2.4e-30 Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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