CSPI07G14750.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI07G14750.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Polyprotein
Location	Chr7 : 13373022 .. 13373618 (-)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCTAGGGGCAATCACCCATCTTCTTATTCTAACCTTTCACCCTCACCAATGAGTGCAGATCAATACACCATGGATTTAGGGTTTACCACGACAACCAGATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACGAAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTACTCCTCCTACTACTTATTCGCAAGTTGTCACTCCAGATAAACGGTTTGTACCAAGATCGAAAATCAAATCTTATTTTCAAAAATTAGTTGTTGTCTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAATATACAATGTCAAAGATTTTCCCTGACGACTTCAATTTTCTTCCTGATGACCTCAGAAAAATGAGAAAATTTTATGAGTTCATCTTAGTTGACACCAAATCAGTTGAAATAACTCATGTTCCAGACAAAAACGACTCTTCAAAGATTGCTTATTCAAAACTAAAAATTTTAAAGCAATGA

mRNA sequence

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCTAGGGGCAATCACCCATCTTCTTATTCTAACCTTTCACCCTCACCAATGAGTGCAGATCAATACACCATGGATTTAGGGTTTACCACGACAACCAGATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACGAAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTACTCCTCCTACTACTTATTCGCAAGTTGTCACTCCAGATAAACGGTTTGTACCAAGATCGAAAATCAAATCTTATTTTCAAAAATTAGTTGTTGTCTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAATATACAATGTCAAAGATTTTCCCTGACGACTTCAATTTTCTTCCTGATGACCTCAGAAAAATGAGAAAATTTTATGAGTTCATCTTAGTTGACACCAAATCAGTTGAAATAACTCATGTTCCAGACAAAAACGACTCTTCAAAGATTGCTTATTCAAAACTAAAAATTTTAAAGCAATGA

Coding sequence (CDS)

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCTAGGGGCAATCACCCATCTTCTTATTCTAACCTTTCACCCTCACCAATGAGTGCAGATCAATACACCATGGATTTAGGGTTTACCACGACAACCAGATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACGAAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTACTCCTCCTACTACTTATTCGCAAGTTGTCACTCCAGATAAACGGTTTGTACCAAGATCGAAAATCAAATCTTATTTTCAAAAATTAGTTGTTGTCTATGATCCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAATATACAATGTCAAAGATTTTCCCTGACGACTTCAATTTTCTTCCTGATGACCTCAGAAAAATGAGAAAATTTTATGAGTTCATCTTAGTTGACACCAAATCAGTTGAAATAACTCATGTTCCAGACAAAAACGACTCTTCAAAGATTGCTTATTCAAAACTAAAAATTTTAAAGCAATGA

Homology

[Close]

BLAST of CSPI07G14750.1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-51
Identity = 119/168 (70.83%), Postives = 132/168 (78.57%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QYTMDLGFT  TRSR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSSTPPTTYSQVVTPDKRFVPRSK 122
            + T+SSTPPRPS NLIRPS         AS  SNR+SSTPPTTYSQ VT DKRFVPR +
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPE 120

Query: 123 IKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR 162
           IKSYFQK +VVYDPIIEPEYQSLTLE  +SKIFP DFNFLP+DL+K +
Sbjct: 121 IKSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of CSPI07G14750.1 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.3e-37
Identity = 92/108 (85.19%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNL+PSPMSADQY M+LGFTT T SRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYS 100
           IGYNST+SSTPPRPSTNLI         RPSASSLSNRDSS PPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of CSPI07G14750.1 vs. TrEMBL
Match: A0A0A0LWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.8e-16
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 126 DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDS 185
           D  IEPE+   ++     ++FP  FNFLP+DL K R FYEFILVD+KS EITHVPDKND 
Sbjct: 3   DLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDP 62

Query: 186 SKIAYSKLKILK 198
           SKI YSKL+I +
Sbjct: 63  SKIIYSKLRIFQ 74

[Close]

BLAST of CSPI07G14750.1 vs. TrEMBL
Match: A0A0A0LUE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.0e-14
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 126 DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDS 185
           D  IEPE+   ++     +IFP  FNFLP+DL K + FYEFILVD+KS EITHVP KND 
Sbjct: 3   DLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKNDP 62

Query: 186 SKIAYSKLKILK 198
            KI YSKL+I +
Sbjct: 63  LKIIYSKLRIFR 74

[Close]

BLAST of CSPI07G14750.1 vs. TrEMBL
Match: A5BG67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 1


Query: 71  PPRPSTNLIRPSASSLSNR--DSSTPPTTYSQVVTPDKRFVPRSKIKSYFQKLVVVYDPI 130
           P +PS + I+ S SS  N    S + P T S + +P +   P      Y +K   +    
Sbjct: 41  PLQPSKSFIQASKSSPKNIVVQSQSSPNTISTLPSPSQSPSPSYSYSQYVKKPKTLEIAF 100

Query: 131 IEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDSSKI 190
           IEPE+    +   +  IFP   NF  +D  K R+FYEFILVDT SVEITH  DKN+   I
Sbjct: 101 IEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQXI 160

Query: 191 AYSKLKILK 198
           A+SK +IL+
Sbjct: 161 AFSKCQILR 169

[Close]

BLAST of CSPI07G14750.1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-51
Identity = 119/168 (70.83%), Postives = 132/168 (78.57%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QYTMDLGFT  TRSR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTKSSTPPRPSTNLIRPS---------ASSLSNRDSSTPPTTYSQVVTPDKRFVPRSK 122
            + T+SSTPPRPS NLIRPS         AS  SNR+SSTPPTTYSQ VT DKRFVPR +
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPE 120

Query: 123 IKSYFQKLVVVYDPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMR 162
           IKSYFQK +VVYDPIIEPEYQSLTLE  +SKIFP DFNFLP+DL+K +
Sbjct: 121 IKSYFQKSIVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of CSPI07G14750.1 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQIG 62
           MS E+GS RGR NS SS+GN PSS SN +PSPMSADQY MDL FTT TRSR+RSS I+IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 63  YNSTKSSTPPRPSTNLIR---------PSASSLSNRDSSTPPTTYSQVVTPDKRFVPRSK 122
            + T+SSTPPRPS NLIR         P AS  SNR+SSTPPTTYS  VTPDKRFVPR K
Sbjct: 61  -SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYSHTVTPDKRFVPRPK 120

Query: 123 IKSYFQKLVVVYDPIIEPEYQSL 137
           IKSYFQK +VVYDPIIEP+YQ+L
Sbjct: 121 IKSYFQKSIVVYDPIIEPKYQTL 142

[Close]

BLAST of CSPI07G14750.1 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 3.3e-37
Identity = 92/108 (85.19%), Postives = 95/108 (87.96%), Query Frame = 1


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLSPSPMSADQYTMDLGFTTTTRSRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNL+PSPMSADQY M+LGFTT T SRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTKSSTPPRPSTNLI---------RPSASSLSNRDSSTPPTTYS 100
           IGYNST+SSTPPRPSTNLI         RPSASSLSNRDSS PPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of CSPI07G14750.1 vs. NCBI nr
Match: gi|700210273|gb|KGN65369.1| (hypothetical protein Csa_1G385050 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 5.5e-16
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 126 DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDS 185
           D  IEPE+   ++     ++FP  FNFLP+DL K R FYEFILVD+KS EITHVPDKND 
Sbjct: 3   DLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDP 62

Query: 186 SKIAYSKLKILK 198
           SKI YSKL+I +
Sbjct: 63  SKIIYSKLRIFQ 74

[Close]

BLAST of CSPI07G14750.1 vs. NCBI nr
Match: gi|700210424|gb|KGN65520.1| (hypothetical protein Csa_1G434180 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 126 DPIIEPEYQSLTLEYTMSKIFPDDFNFLPDDLRKMRKFYEFILVDTKSVEITHVPDKNDS 185
           D  IEPE+   ++     +IFP  FNFLP+DL K + FYEFILVD+KS EITHVP KND 
Sbjct: 3   DLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKNDP 62

Query: 186 SKIAYSKLKILK 198
            KI YSKL+I +
Sbjct: 63  LKIIYSKLRIFR 74

The following BLAST results are available for this feature:

BLAST of CSPI07G14750.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI07G14750.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCE6_CUCME	1.6e-51	70.83	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0K595_CUCSA	2.3e-37	85.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1	[more]
A0A0A0LWK6_CUCSA	3.8e-16	61.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1	[more]
A0A0A0LUE7_CUCSA	8.0e-14	58.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1	[more]
A5BG67_VITVI	3.4e-12	40.31	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1	[more]

BLAST of CSPI07G14750.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI07G14750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136323\|gb\|ADN34145.1\|	2.4e-51	70.83	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659098578\|ref\|XP_008450208.1\|	2.6e-42	71.33	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|700189415\|gb\|KGN44648.1\|	3.3e-37	85.19	hypothetical protein Csa_7G361530 [Cucumis sativus]	[more]
gi\|700210273\|gb\|KGN65369.1\|	5.5e-16	61.11	hypothetical protein Csa_1G385050 [Cucumis sativus]	[more]
gi\|700210424\|gb\|KGN65520.1\|	1.1e-13	58.33	hypothetical protein Csa_1G434180 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G14750	CSPI07G14750	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G14750.1	CSPI07G14750.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G14750.1.cds1	CSPI07G14750.1.cds1	CDS