CSPI07G08730.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G08730.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr7 : 6568971 .. 6572150 (-)
Sequence length390
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTGAGTTTTTCTTTATAGTTTTCCATTGTTGATGATGAGGTCCCCACTTTTTTCTTTTTTTTTTGATTCATTATCATTATTTTACCAACATATATTTTTTTAATTGGTGTGAATTTGTATTTTGCTATTTTTTTCATGTTTGATTTAGCTGTCTATATTCTATTTGCCCACTCATAGCTTAGCCATTACTTCTAGTATGTGTATGTTGTGAATATTTGTGCACTTTCCATTGCAGTATACTTCAATATATTTTTTCCCTAGCTAGCCTTCGATGTTTCATTCCCTTCATCTATGTAAATACACACCATGTGCATTGTGTGGCAGGTATACTGCATTTAACTTTGACAAAATTTTCTAGTTATCTAACTTTTCTTTTTCCATATGTTATGTGTTGGCTTTTCCATTATCATCAGTCTATGCTCAAATTTGGTTGTTTAGGGGTCTTCAATGCATCATTACTTCTTACATTTCCCAGCCATATATACTTGTTATGCCATTATGCCTTATGTGTGTTTTCTCCTCGGTTCATCTTCATAGAAACTCTTGATTACTCAATTCTTTGGTATGTATATGCATAAATGTGGTTTGTGTTCCATTGTGTGTTTGGTCTTCACAATCTACTTATGTACTTGTCATTGATTGAAGTTGTGATCCATGTTAGGCCACTTGTTGTTTATTTACATGCATTTTCATGTCACCAATTCCATACTACCCGCCTTTTTCCATTATTGTTCTCCATTCCAATAACTTTTATTTCTCCACATTTTCGACTATTGCATATTTGAAGCCCTTGGTCCATTGTTTATGTTCATTTTCATGCCTTTCATAGCACCACATTTGCTACTACTATATTTTTGAGCATTTTTTCCATATTTTTTGTTCATGTGTACGTCTTTCTTATCATCTAGCATTGCATATTGCATATGTGGTGCTATGAAATGTCTTCACATTTGTTCCACTCCATGAAATTCGATTTCAAATTTTGTGCACCTTTTTTTTCCTCCATCCACCAAGTACGTAGGAATATGTATTAAAATAATGTGTTTTTCCAAACTTATTAGATAAATAATGCTGATTGGAAACTAATTACAAAAATAATGCAGTTTTGGAAGAGAGAAGGTCGAGCATTGAACTTTGACCTTTATTTAAAAAAAAAGGAAGGGGGTGAGTTTTGAGTCTTCAAGACTTGCCCTAATTAAATATATATATATATATATATTCGAGTCATTTTGCGCAATAGCAGGAAAAACATGTATGGTCAAATCACTTCTTTCCCATGAAGCTTTTCTGTGGGTAGGTTGAGTATTTAAAGCTCCACTTAATTATATATATATATTTATATTATGGCCATTATGCGTAACGACAAGAAGAGTAGACATTCATGCATGGTCAAATCGTTTTTTTCTTGTGAAGAAGGGCGAGTACTCTCTCTTCTCTTTTATATCCTTCCTCTTCATTCTCATCTTACCTCTTGGCCATTCTTCTCCCATTCAGATCATCTTTCACAAAATACTCTCAGCTCTTCTTCTTTAATTCCCATCTTTCACAAATCCTCTCATCCTTCAAATTACCTCTCAATTTTCCTTCCCATTTTCCCTCCAATCCCCATCATATTTTCATCCTTAATATTTAAATCAGGACGTTGGCTGCTCCTCGTTGCAATCAGTCTCAATAGCTTGGCAACTCAACTGGAGAATTGAAAAATGATTAAGAGAGTCGAGTTGTTACATTTTTACCTTTTATTCTTATTTTATTATGATTTTTTGTTTTTTTTATTTGATTCATATCGAGTGTTCGTATTTTTTTATTGGTACATTTTTTAAATATGTCATCATGCATTTTACACACACTCACAAGTCCTCTACTCAGGCTACAACTTTATAGTATTAGGATTGAGGAATGAGTAGTGTTAACCTTCAAGAGATTTCGACTTCCGTGTAGGCACAAGAAAAATGTTCGTTCAGATTAATTCTTTTGTTATTTCTTAAATTAACATTAGAACAAGTTTGAGGGTCTTTCCCTTCTAGAAGTTTAGATGATACAAGACCGTAACATTTTCTATTTGGCATATTTTATCTAAAAGTCAAACGGTCAAAATTATTATTGTTTTTTTTTAAACAAAGTTACATGTTTCTAAAATTTGAAATCATACCATATTTCCTTTATTTTTTTTTAAAAAAGGGGTTAAATCACAATATTTTTTACATTATTTTTTTTAAGGAAAGTTTGATTTTAGTTAATATTTATCTTAGTTTCCTTGAAATTGGTTCTTTGGCTTCGATCATATATAGTTAGGGTAGTATTTACCTTGTAGAAGCACGTGAAAAACGGTAACATCCCAAAACTATTAAGATAATTTTTAATTTTATTTTGTTGAAATTGGGTATTAATTGAGATTTGATGTTAGATGAGTTAAGTATTTAAGGAAGAATTGTTAATTATTTGAGAGTTTTGGTTATTAGTTGTTAATTATGCAATTAATTTTCGAAAGAGAAAAAAAAAAATATTTAAGGATAATATAATTATTAAAATGTTATATCGTGATTTTGGTGGAATAAAAAGAGGAAAAGTTGTTTTAATGGGTAATTAAGGTGGAGTGAGCTTTATTTCGAAACGTAAAAAGTGAAAGAAAAATTAATTAAAAGATATAATAATGATATTTATTATTATCATTATTAATAATATTATCATTATTAAATAAGCCTTCTCTCGTTTTACGTGCATCATCTTCTCCACCACATTGATTCTCCTTCACCATTCAACCTTAGTCGCCGCCGCATTGTGCGTCAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT

mRNA sequence

ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT

Coding sequence (CDS)

ATGACCCACTTGTATGGCTGCTCGGACAACCCCTTCACAAGCAAATTTCCCTTTGTCGCTCGCCCTTTCCATTGTCGATTGAGGTTGCCTATTAGTGATAAAAATAGATACTACATCCGTTTGGTAGTGTTTGAGCCGAACACGGTAGAGAAGGAGGTCACCACCGTTGCGCAATCATCGTCGGGGACACAACTCGCAGCCAGTCATCACTCGTTAGTCGAGATCTACTCGTTGGTTGCCAAATCGAGCATCTCTCATTGTCTTCATAATCACTTGAAACCGGCTGCCCCTCCTTCGTCGAAATTGTCGTCGGCCGTAACCCTCTCCTCCGTCGAAACCATCATGGGTCGTAGCCTCCACTTGCACAGTGTCGCTGGCCATCGTTGCGCT
Homology
[Close]
BLAST of CSPI07G08730.1 vs. NCBI nr
Match: gi|778725424|ref|XP_011658941.1| (PREDICTED: uncharacterized protein LOC101207447 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.0e-23
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 

Query: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEVTTV 57
          MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKE  +V
Sbjct: 1  MTHLYGCSDNPFTSKFPFVARPFHCRLRLPISDKNRYYIRLVVFEPNTVEKEGDSV 56

The following BLAST results are available for this feature:
BLAST of CSPI07G08730.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G08730.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI07G08730.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G08730.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778725424|ref|XP_011658941.1|3.0e-2394.64PREDICTED: uncharacterized protein LOC101207447 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G08730CSPI07G08730gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G08730.1CSPI07G08730.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G08730.mrna.cds.2CSPI07G08730.mrna.cds.2CDS
CSPI07G08730.mrna.cds.1CSPI07G08730.mrna.cds.1CDS