CSPI07G08220.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI07G08220.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr7 : 5976312 .. 5979516 (-)
Sequence length1173
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAGTAATCTTTTGACTACTTTAACTTCCATGAGGTATAAGGACAATGGAAACATAAGGGAGTAAGTTACAAAAATGTCTAATCTCGCTCGTAAATTAAAGACACTTGATATCAAAATAAATGAAAATTTACTCGTACATCTAGTACTTATCTCTCTTGCTGTACAATTCACTCAATTTAAGATAAGTTATAATACTCTGAAAGATAAATGGAGTATTAATGAGCTTATCTCAAAATGTGTGCAATAAGAAGATAGGATTAAGAGAGAAATGATAGAAAGTGCTCATAACTAACTTTTATTGTAAGAAGAAAAGAAAACATATAGATATGTTGTAGAAGGGACATCTAAGCAAAAAAAAGAAACAAGCTACAGAGAATCCTTGTTTCTTCTGCAAAGAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGGTACTTGGTGGGTAGATTATGGTGATACTACTCACATAAGTATATCCATGTAAGGTTGCCTATAGAGCCAATCGCCAAATAATGTTGAAAGATTCATCTACGTGGGCGATGGCAAAGCAGTTCCAATTGAAGTTATTGACAATTTTTTACATTACTTTTAAAAATTGTTTGCTTTTTGGATTTGAACGAGACTTTTATTGTATCGTCATTTAGACGAAACTTCGTTTTTATTTCCAGTTCGAACAAGTTTGGTTTTTCTTGTTCTTTTGAAAATAATAGAGTTCGTCTTTTTCAAAATCAAGCTTATTGGTATTAGTTCTTTAATTGATAACATATACATGCTTAATTCTTATGCTTCATCTAACAAGGTTTTGTTGTCTAAATAATGTGGTACGAAGTGTAAATTAAATGAGAATGTTGGCTATGTTGTGGCACAATCGTTTAGGTCACATCTCTAAACATAGAATTTAGAAACTTATGTCCGATGAAATTCTTAATTCCCTTGATTTAAGCAAATTTGAAGTTTGTGTGAAATTTATTAAGGAAAACATAAAAATATAAGAAAATTAAGTGCAAACAGATGTTTAGGCGTCTTAGAACTAATACATACAGACATTTATGGCCCATTCCCTATGGCTTCTTGGAATAGACAACAATACTCGTTTATAGACGACTATTCAAAATATGGGTACCTATATTTAATTCATGAGAAGTTTCAATCTTTGGACGTTTTCAAGTCTTTTAAAGCTAAAGTGGAATTTCACCTTGGAAAGAAAATTAAGGTTGTCAAGTCTGATCGTGGTGGTCAATACTACGGTAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGTGAAATAGAATACTTAAGGATATGGTAAAGAAGTATGATTAGTCATTCTTCTTTACCAGAACCTCTATGGTGTGAGGCATTAGAGATGTATATCCTCAACAGGGTACCTAGAAAGCAGTAGCTAAAACCCCTTATGAGTTATAGACAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGTGAAGATAGAATAAAGAAATTTGTCTTGGAAGAGAAGTTAGTTTCTCTTTCTAATGTGGGCATAGATGATGTTTAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAAATTTCATATGATTATTTGTGTTTCTTCAAGAACATTAAGATTAAGATGATATGGGCATAATGGAAGATGATCCAATCAACTTCCAACAAGCTTTACAAACCTCTAACTCTAAAAAATGGATAAATACTATGGATGGGGAAATAAAATCCATGAAAGACAATGATGTTTGGAAACTTTTCGAATTGCCATCAGGAGTGAAACCCATAGGTTATAATTAAATGGATATTTAAAACCAAAAGGAATTCACAAGTAAAAATTGAAAGGAATAAAGCTCGTCTTCTAGGAAAGGGTTTTACTCAAAAGGAAGACATTGATTACAAAGAGACTTTCTCTCCAGTTTTATCGAAAGACTCTTTGTAGGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGGTACAACCAAAAAACTTTGTAACTAATAATTCAAAGTCTATGGTATGCAAATTTGAAGAAATCTATCTATGGTTTCAAACAAACCTCTCATCAATGGTATCACAAATTTCATGAAGTAATTACTTCCTTTGATTTTGAGGTGAATATAGTGAAAGATACATATCACAAGTTCGGTCAGAGTAAATCTATTTTTCTGGTGTTATATGTTGATGATATACTCATACCAAGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA

mRNA sequence

ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA

Coding sequence (CDS)

ATGGATCTAGACCTTGCATTGAGGATCGATAAACCTACTTCTACTAAGGAACAACTGAATACGACTAATATTGAGAAGTGGGAACTGTCAAATTGCATGAACCTGATGATTATTAGGCACTCCATTCCAGAGTCTTTTCGGGGTTCTATCACTGAAAGTGAAAATGCCAAAAAGTGTTTTGTCGAAATTGAAAAATATTTTGCTAAAAATGGAAAAGGGGAAGCAAAGAAAGGTCTTCTCAAGAAAGATTGTCTCAAGTATGCCAAATGGCATGTTAGTTTAGCTTATGTACCTACAGATATAATGGATCAGGGTGAACAACGTTTAGGACCCTTTGCCAAATACCTAGAAAAATGTGGAATCGTCTCGCAATACACTATGCCAGAAAAACCTAGCATGAATGGTGTAGCGAAAAGGAAAGAAGACCTAGTATTAGCCATCTCAACGTCTGAGGTTGTCCAACTAAGGCTAGGCCTTATAGGCCTAACAAAAGAAAATTGGACCCAAGAACTATTAGCTGTTATTTTGTTGGGTATTCTAAGGATTTCTCCGAGTTTTAAGTTTTATGATCCCACTTCGAGATCGTTTTTTGAGACTGAAAATGCTAGATTCCTTGAGGATGTTGAGTTTGAGGCTCCAATTCTTGACTTCACTATAAAACCAATTATAGAACAAGACAACAACAAAGTCCTTGTTGAACCTAAAGTTCAAACTCGACAACCTCAAGAAGTGCCATTAGAGAAAAAAGAAGTAATCATGGCATTAGTAGCTCACTTAGATTTAGAGCTACATCAGATGGATGTGAAAACTGTGTTTCTCAATGAAAACATTGTTCAGACGATTTATATGACTCCAAGTAATGATGTAAGTTTATTGTATGACATTAAGAGGCTTCTCAAAAAGAATTTTGAGATAAAGGATCTTGAATATGGTTCTTTTGTCACTACAAGGATTTGGGAAATTCGACATTTGTACAAAAACTCTTCGAGAAAACCTCTTCTGACGTTAGATGCTCCATCGGGAAGATGTCGAGCATGCTACGTTAGGGAAGCAATTTTCGATTCACAAACAAGAACGTCAAGAATGTCGTATCCTCGACGCCATCAATGCCAACGGATGGTTGACGTCGATAGTGGCTTACGCTCAATGTCTCCTCCGTATATTATCTCTTAA
Homology
[Close]
BLAST of CSPI07G08220.1 vs. TrEMBL
Match: W9RV45_9ROSA ((-)-limonene synthase OS=Morus notabilis GN=L484_024165 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.6e-18
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 1  MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
          MDLDLALR ++PT+T E LN   IEKW+ SN M+LMI++ SIPE+FRGS+TES NAKK  
Sbjct: 8  MDLDLALRTERPTATTENLNMDKIEKWDRSNHMSLMIMKRSIPEAFRGSVTESTNAKKFL 67

Query: 61 VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
           E+E+YFAKN K E    L K   ++Y
Sbjct: 68 KELEQYFAKNEKSEMSNLLNKLISIRY 94

[Close]
BLAST of CSPI07G08220.1 vs. TrEMBL
Match: A0A0B2NVV3_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_008082 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.7e-18
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLALR+++PTST +  N   IEKW+ SN M +MI++ SIPE+FRGSI+E ENAKK  
Sbjct: 37  MDLDLALRMERPTSTSKASNEVKIEKWDRSNLMCIMIMKRSIPEAFRGSISEGENAKKFI 96

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
            EIE+YFAKN K E    L K   +KY
Sbjct: 97  DEIEQYFAKNEKAETSNLLAKPISMKY 123

[Close]
BLAST of CSPI07G08220.1 vs. TrEMBL
Match: A5AU78_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001401 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1 

Query: 105 GEQRLGPFAKYLEKCGIVSQYTMPEKPSMNGVAKRKEDLVLAISTSEVVQLRLGLIGLTK 164
           GEQR GPFAKYL +CGIV QYTM   PS NGV +R+   +  ++             L +
Sbjct: 295 GEQRPGPFAKYLMECGIVPQYTMSGTPSQNGVVERQNHTLKDMARP---------YKLNE 354

Query: 165 ENWTQELLAVILLGILRISPSFKFYDPTSRSFFETENARFLEDVE 210
           +      ++   +G  + S  FKFYDP++RSFFET+NA+F+EDVE
Sbjct: 355 KKLDSRTVSCYFVGYSKRSRGFKFYDPSTRSFFETDNAKFIEDVE 390

[Close]
BLAST of CSPI07G08220.1 vs. TrEMBL
Match: A0A0B2SD74_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_042886 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-14
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 1  MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
          MDLDLALR ++P ST +  N   IEKW+  N M LMI++HSIPE+F+  I+E ++AKK  
Sbjct: 11 MDLDLALRTEQPFSTPKTSNEVKIEKWDRFNRMCLMIMKHSIPEAFQDFISEGQSAKKFL 70

Query: 61 VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
           EIE+YFAKN K E    L K   +KY
Sbjct: 71 GEIEQYFAKNEKAETSNLLAKLISMKY 97

[Close]
BLAST of CSPI07G08220.1 vs. TrEMBL
Match: A0A151RFD4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_037529 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 

Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLA R++KPT T E L+   +EKWE SN M LMI++ S+PE F+GSI+ES+N K   
Sbjct: 21  MDLDLAFRVEKPTPTPENLDEDKVEKWERSNRMCLMIMKRSVPEVFQGSISESQNDKGFL 80

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
             +E YF  N K +A++   K   ++Y
Sbjct: 81  DAVEHYFTSNEKADARRLFAKLISMRY 107

[Close]
BLAST of CSPI07G08220.1 vs. NCBI nr
Match: gi|659102484|ref|XP_008452157.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103493262 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 55/69 (79.71%), Postives = 55/69 (79.71%), Query Frame = 1 

Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLAL I KP  TKEQ NTTNIEKWE SN M LMII HSI ESFRGSITESENAKK  
Sbjct: 38  MDLDLALSIGKPAFTKEQSNTTNIEKWERSNRMCLMIIEHSILESFRGSITESENAKKFL 97

Query: 61  VEIEKYFAK 70
            EIEK FAK
Sbjct: 98  AEIEKSFAK 106

[Close]
BLAST of CSPI07G08220.1 vs. NCBI nr
Match: gi|703127563|ref|XP_010103863.1| ((-)-limonene synthase [Morus notabilis])

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 1  MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
          MDLDLALR ++PT+T E LN   IEKW+ SN M+LMI++ SIPE+FRGS+TES NAKK  
Sbjct: 8  MDLDLALRTERPTATTENLNMDKIEKWDRSNHMSLMIMKRSIPEAFRGSVTESTNAKKFL 67

Query: 61 VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
           E+E+YFAKN K E    L K   ++Y
Sbjct: 68 KELEQYFAKNEKSEMSNLLNKLISIRY 94

[Close]
BLAST of CSPI07G08220.1 vs. NCBI nr
Match: gi|734313080|gb|KHN01180.1| (hypothetical protein glysoja_008082, partial [Glycine soja])

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-18
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLALR+++PTST +  N   IEKW+ SN M +MI++ SIPE+FRGSI+E ENAKK  
Sbjct: 37  MDLDLALRMERPTSTSKASNEVKIEKWDRSNLMCIMIMKRSIPEAFRGSISEGENAKKFI 96

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
            EIE+YFAKN K E    L K   +KY
Sbjct: 97  DEIEQYFAKNEKAETSNLLAKPISMKY 123

[Close]
BLAST of CSPI07G08220.1 vs. NCBI nr
Match: gi|955304480|ref|XP_014633291.1| (PREDICTED: uncharacterized protein LOC106799425 [Glycine max])

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-18
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1   MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
           MDLDLALR+++PTST +  N   IEKW+ SN M +MI++ SIPE+FRGSI+E ENAKK  
Sbjct: 21  MDLDLALRMERPTSTSKASNEVKIEKWDRSNLMCIMIMKRSIPEAFRGSISEGENAKKFI 80

Query: 61  VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
            EIE+YFAKN K E    L K   +KY
Sbjct: 81  DEIEQYFAKNEKAETSNLLAKPISMKY 107

[Close]
BLAST of CSPI07G08220.1 vs. NCBI nr
Match: gi|1012171997|ref|XP_015965952.1| (PREDICTED: uncharacterized protein LOC107489712 [Arachis duranensis])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1 

Query: 1  MDLDLALRIDKPTSTKEQLNTTNIEKWELSNCMNLMIIRHSIPESFRGSITESENAKKCF 60
          MDLD ALR +KPTST + LN   IEKWE SN M++MI++ SIPE+FRGSITE ++AK+  
Sbjct: 1  MDLDTALREEKPTSTPKNLNEVKIEKWERSNRMSIMIMKRSIPETFRGSITEDKDAKQFL 60

Query: 61 VEIEKYFAKNGKGEAKKGLLKKDCLKY 88
           ++EK+F KN K EA   L K   ++Y
Sbjct: 61 KDVEKFFTKNEKAEASSLLCKLVSMRY 87

The following BLAST results are available for this feature:
BLAST of CSPI07G08220.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G08220.1 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RV45_9ROSA3.6e-1858.62(-)-limonene synthase OS=Morus notabilis GN=L484_024165 PE=4 SV=1[more]
A0A0B2NVV3_GLYSO4.7e-1858.62Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_008082 PE=4 SV=1[more]
A5AU78_VITVI3.7e-1544.76Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001401 PE=4 SV=1[more]
A0A0B2SD74_GLYSO5.4e-1452.87Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_042886 PE=4 SV=1[more]
A0A151RFD4_CAJCA1.6e-1348.28Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
BLAST of CSPI07G08220.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G08220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102484|ref|XP_008452157.1|2.3e-1879.71PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103493262 [Cucumis me... [more]
gi|703127563|ref|XP_010103863.1|5.2e-1858.62(-)-limonene synthase [Morus notabilis][more]
gi|734313080|gb|KHN01180.1|6.8e-1858.62hypothetical protein glysoja_008082, partial [Glycine soja][more]
gi|955304480|ref|XP_014633291.1|6.8e-1858.62PREDICTED: uncharacterized protein LOC106799425 [Glycine max][more]
gi|1012171997|ref|XP_015965952.1|1.3e-1655.17PREDICTED: uncharacterized protein LOC107489712 [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0010333 terpene synthase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI07G08220CSPI07G08220gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI07G08220.1CSPI07G08220.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI07G08220.1.cds7CSPI07G08220.1.cds7CDS
CSPI07G08220.1.cds6CSPI07G08220.1.cds6CDS
CSPI07G08220.1.cds5CSPI07G08220.1.cds5CDS
CSPI07G08220.1.cds4CSPI07G08220.1.cds4CDS
CSPI07G08220.1.cds3CSPI07G08220.1.cds3CDS
CSPI07G08220.1.cds2CSPI07G08220.1.cds2CDS
CSPI07G08220.1.cds1CSPI07G08220.1.cds1CDS


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 251..287
score: 3.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 107..137
score: 9.4E-16coord: 186..308
score: 9.4
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 186..308
score: 9.4E-16coord: 107..137
score: 9.4