CSPI06G26720.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G26720.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 23563300 .. 23563770 (-)
Sequence length471
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGGAAGGAAGGAAGGAGAAGCCAACCCTCCAAAGAAGGTCGGTCTGGGTGAGAGAAGAGTGAGTGTTGTCGACCTAGGTGAGTTGAAAGACGAGAATAAGAGGAAGAGGAAAGAAGAGAAATGGGGGTTTATAAACAGAGAGAGAGAGGGAGGAGGGAAAGAAGGGAAATGCAAATGCAAATGCAAATGCGAAGGAAATGAGAAATTTGGAGAAGGAATCATTTCGACCACGAGAAAAGATAGGGTGACCTGGCTGACAGCCTTTCCCAGCCCCATTCTTCCTTTCTTCTTCCTTTCTTTTTCCTCTTTTTTCATTTCTTTAATCTCCACCGTTCGATCATTTATTTTCGGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTTCGGCTTCCGCTTCCTAAGAATTTCGAATCCGAACCCCCAAAGGCCAATTTTTTTGAATTTTGAAAATTGA

mRNA sequence

ATGAAGGAAGGAAGGAAGGAAGGAGAAGCCAACCCTCCAAAGAAGGTCGGTCTGGGTGAGAGAAGAGTGAGTGTTGTCGACCTAGGTGAGTTGAAAGACGAGAATAAGAGGAAGAGGAAAGAAGAGAAATGGGGGTTTATAAACAGAGAGAGAGAGGGAGGAGGGAAAGAAGGGAAATGCAAATGCAAATGCAAATGCGAAGGAAATGAGAAATTTGGAGAAGGAATCATTTCGACCACGAGAAAAGATAGGGTGACCTGGCTGACAGCCTTTCCCAGCCCCATTCTTCCTTTCTTCTTCCTTTCTTTTTCCTCTTTTTTCATTTCTTTAATCTCCACCGTTCGATCATTTATTTTCGGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTTCGGCTTCCGCTTCCTAAGAATTTCGAATCCGAACCCCCAAAGGCCAATTTTTTTGAATTTTGAAAATTGA

Coding sequence (CDS)

ATGAAGGAAGGAAGGAAGGAAGGAGAAGCCAACCCTCCAAAGAAGGTCGGTCTGGGTGAGAGAAGAGTGAGTGTTGTCGACCTAGGTGAGTTGAAAGACGAGAATAAGAGGAAGAGGAAAGAAGAGAAATGGGGGTTTATAAACAGAGAGAGAGAGGGAGGAGGGAAAGAAGGGAAATGCAAATGCAAATGCAAATGCGAAGGAAATGAGAAATTTGGAGAAGGAATCATTTCGACCACGAGAAAAGATAGGGTGACCTGGCTGACAGCCTTTCCCAGCCCCATTCTTCCTTTCTTCTTCCTTTCTTTTTCCTCTTTTTTCATTTCTTTAATCTCCACCGTTCGATCATTTATTTTCGGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTCCGCTTCGGCTTCGGCTTCCGCTTCCTAAGAATTTCGAATCCGAACCCCCAAAGGCCAATTTTTTTGAATTTTGAAAATTGA
Homology
[Close]
BLAST of CSPI06G26720.1 vs. TrEMBL
Match: A0A0A0KKV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484590 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.9e-61
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 1   MKEGRKEGEANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC 60
           MKEGR E EANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC
Sbjct: 1   MKEGRNEEEANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC 60

Query: 61  KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFISLISTVRSFIFG 120
           KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFIS ISTVRSFIFG
Sbjct: 61  KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFISFISTVRSFIFG 120

Query: 121 FGSASA 127
           FGSASA
Sbjct: 121 FGSASA 126

[Close]
BLAST of CSPI06G26720.1 vs. NCBI nr
Match: gi|700193177|gb|KGN48381.1| (hypothetical protein Csa_6G484590 [Cucumis sativus])

HSP 1 Score: 241.5 bits (615), Expect = 9.9e-61
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 1 

Query: 1   MKEGRKEGEANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC 60
           MKEGR E EANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC
Sbjct: 1   MKEGRNEEEANPPKKVGLGERRVSVVDLGELKDENKRKRKEEKWGFINREREGGGKEGKC 60

Query: 61  KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFISLISTVRSFIFG 120
           KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFIS ISTVRSFIFG
Sbjct: 61  KCKCKCEGNEKFGEGIISTTRKDRVTWLTAFPSPILPFFFLSFSSFFISFISTVRSFIFG 120

Query: 121 FGSASA 127
           FGSASA
Sbjct: 121 FGSASA 126

The following BLAST results are available for this feature:
BLAST of CSPI06G26720.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G26720.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKV0_CUCSA6.9e-6197.62Uncharacterized protein OS=Cucumis sativus GN=Csa_6G484590 PE=4 SV=1[more]
BLAST of CSPI06G26720.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G26720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193177|gb|KGN48381.1|9.9e-6197.62hypothetical protein Csa_6G484590 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G26720CSPI06G26720gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G26720.1CSPI06G26720.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G26720.1.cds1CSPI06G26720.1.cds1CDS