CSPI06G22110.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATATTTCGTGGGCCATGAATTTTATCTTTTGTTAATTAAGCTAACCGGAAATCCCCAATGGCAACTTCCGCGGCTCAGCTCCATGCCTCCATACTCCATAATCACCACACTACTTGAAAGTTGTAATACAAGAACGCAATTCTATGGGAGCCGTTTCTCCATTCCTTGCATCCTCTCTACGACCCTACCGTTTCCCTTCTTCAACACAAACCCTTCTTTCTAACTTCGCTGCTTCTTCACAACTCCTTTCTTTCACTCCCAATTGCACAAAATTCCGCAGCAAAACGTTGGTTTTTGGGAAGCAATCAGGCAACGATAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCAATGATATGGATGGATACTTGAATTACCACTCTTTCGAATATGACTCCGTTTGGGATACAAAGCCTGCTTGGTTAGCTTTCCATTTCAGGGGTTTTTCTTCCTCCATTTTTACTCTCGCTTTCTGCATTTTTATGTTTTTATCGTTGGCTTTTCATCAACTATCTGAAATTTCTGTTATCAGATTAGTTTTTTGAGGTTTTCAGAGAATCACAATATTGGGATTTCGGAATTAATGCTAACAAATCAAGGAATCATGAATTTCTATCTCGGTTTATTGTTTACAGCGAAAATTATGTATTCAGCAATGTGCTTAAATAATGTTGGGTCTTTTTCTTTTGTTTTTTAAGTTTAACATGGTGGGGGTCGGCTACATTTGGATTTCTAGTTGCAGAAGTTGAATGATTAATGATGGATTTTTTCTCTTAACAGTATTATGATGTTCTTAGTTAGACATATCACATATTGTTTACTGTTTCTATCCCATAGCATGTGCTGATTATGACATATTGTTCATCTCTTTACAAGTTTGGTCATGGGACTCATGACTGACATGTTTCTGTGGAGAATCATCCTCCTATCTGAGAATTTTAAGGCTGTGATTGCAATTATTTCAATTTCCATAATTACAACCTTCATTACAAAAGTGCTTTTTCTTCCATTAATGTTTAGTTTAGCTAGAATAATTTCTAGAGGGTAATGTAATGGTATGAAGAAGTTAGATAAGCTTTTAGTCTTTTATCCTTATCCTATACTATAGGCCACAGTTCACATGACTTCAAATGAATCAAAAAGCAACTGAACTCATTGATTTGGGGTTTTTAGAAAGAGTAAATGCATCAGTGCTAAAAAGGCAACTGGGACTCAATTTCAAAGCAGATTTCTGTAACGTTTAGATCTATGTACCTCTTTGTGCTTACGAGCATCTCGAATATTGCCTTTCTGTGTTCCTCCTCTTTGAATCTGCTAAAATGGAAAAAAAGAGAAGAAAAAGAAGAAATCTCTAATGTCCATGAAAACCGGCCGTTGCCAGTCCGGATTGGTTTGGTGAGAAATGAGATACTCTCTCTTAAGTGTCTGTCAAAGTTTTTTGTTTCAGTGTAGAATTCTTTTTTAGAGGATTGATATAATGGATTATGTTTACCACAACCCAATGATCTAAGTTTCTAAGTTGATTGGTGATTTACAATGGCATCATATCAGAAGGTCCTACGTTCAGAATCTTGTCATGTCATTTTTTAACTAATTAATTAATATTGATTTTCTTGAACCTTCTACAAATTTTCAAGCTCACAAATGAGAGGAAGTATTAGACTATTGATATAACTAATTAACTGATATCTTTTGGTTCAATTTGTGATATATCACTTTGCCATTACTTCGTGATTTTGATGTTATTATCATGTTGTCACAAGGTGTCAACCATGGACTATAACACTGACAGGATTGCTAGTGATTGCCTCTAGCTGGGTTGCTATAAAGTCGATAGCAGTGACCGCAGTCATACTCACGTTAATATGCTTATGGTGGTACATCTTTCTCTACTCATATCCAAAGGTTTGTGCATCCAATTATACAGCTCCTATATAACCCGTCTTTGATTAATTTTGAATTTGGTATTTGAATGTAGAATCACCGTTAATAGAATGGGACTCTGCATATTTTATGAATGCAAGATCACTTAGACAAAAGCGTCGATATTGGAGTATTTCTGATAGTATTTTACTTTTACTGCTAAAAGCGAACGAGAGGAAGAAAAAAGTTGGTTTTCTTTTACATGAGAAGGTTCTGTGCATTTGCAGGCTTATTCTGAAATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAATGATTAGTTTAGAGAGAGTATATATGTGTTTTACCAACTTTTGCTGATATCTATCTAAATTCTATTACTGATATTATCACCTATACACGGATATTAGTGATATCATTCGTAGATGATAAAGAAACAGGATTAGTTTTCATAATTGTGTCGATTTGTTCCATCTCTATTCTCACATCTTTTTCCAGGCTTTTGATGAGCCTTCGGTGCTGATATGAGGAACATGTAACTAAGTGAAGAAGTATTTCTTTCAAGATTGGAGCTCTAAAACCAATACATATTTATATTTTGCC ATGGGAGCCGTTTCTCCATTCCTTGCATCCTCTCTACGACCCTACCGTTTCCCTTCTTCAACACAAACCCTTCTTTCTAACTTCGCTGCTTCTTCACAACTCCTTTCTTTCACTCCCAATTGCACAAAATTCCGCAGCAAAACGTTGGTTTTTGGGAAGCAATCAGGCAACGATAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCAATGATATGGATGGATACTTGAATTACCACTCTTTCGAATATGACTCCGTTTGGGATACAAAGCCTGCTTGGTGTCAACCATGGACTATAACACTGACAGGATTGCTAGTGATTGCCTCTAGCTGGGTTGCTATAAAGTCGATAGCAGTGACCGCAGTCATACTCACGTTAATATGCTTATGGTGGTACATCTTTCTCTACTCATATCCAAAGGCTTATTCTGAAATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAATGA ATGGGAGCCGTTTCTCCATTCCTTGCATCCTCTCTACGACCCTACCGTTTCCCTTCTTCAACACAAACCCTTCTTTCTAACTTCGCTGCTTCTTCACAACTCCTTTCTTTCACTCCCAATTGCACAAAATTCCGCAGCAAAACGTTGGTTTTTGGGAAGCAATCAGGCAACGATAATGATTCTCAGTTTCTAGATGAAAATGGGGTCGTCAATGATATGGATGGATACTTGAATTACCACTCTTTCGAATATGACTCCGTTTGGGATACAAAGCCTGCTTGGTGTCAACCATGGACTATAACACTGACAGGATTGCTAGTGATTGCCTCTAGCTGGGTTGCTATAAAGTCGATAGCAGTGACCGCAGTCATACTCACGTTAATATGCTTATGGTGGTACATCTTTCTCTACTCATATCCAAAGGCTTATTCTGAAATGATTGCAGAACGAAGAAGAAAGGTTAGTGATGGACTAGAAGACACATTTGGTGTGAAAAGGACACAATGA
BLAST of CSPI06G22110.1 vs. TrEMBL
Match: A0A0A0KED9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G410630 PE=4 SV=1) HSP 1 Score: 337.4 bits (864), Expect = 9.9e-90 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. TrEMBL
Match: B9S406_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0557330 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 4.7e-47 Identity = 101/173 (58.38%), Postives = 125/173 (72.25%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. TrEMBL
Match: B9H895_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23230g PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 6.1e-47 Identity = 93/151 (61.59%), Postives = 119/151 (78.81%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. TrEMBL
Match: A0A0D2QSA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G137700 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 8.2e-44 Identity = 99/173 (57.23%), Postives = 117/173 (67.63%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. TrEMBL
Match: A0A067JPI0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21920 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 8.2e-44 Identity = 98/172 (56.98%), Postives = 125/172 (72.67%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. TAIR10
Match: AT4G02725.1 (AT4G02725.1 unknown protein) HSP 1 Score: 164.1 bits (414), Expect = 7.6e-41 Identity = 82/155 (52.90%), Postives = 109/155 (70.32%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. NCBI nr
Match: gi|449444669|ref|XP_004140096.1| (PREDICTED: uncharacterized protein LOC101202761 [Cucumis sativus]) HSP 1 Score: 337.4 bits (864), Expect = 1.4e-89 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. NCBI nr
Match: gi|659097086|ref|XP_008449434.1| (PREDICTED: uncharacterized protein LOC103491324 [Cucumis melo]) HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80 Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. NCBI nr
Match: gi|255559410|ref|XP_002520725.1| (PREDICTED: uncharacterized protein LOC8259591 [Ricinus communis]) HSP 1 Score: 195.7 bits (496), Expect = 6.7e-47 Identity = 101/173 (58.38%), Postives = 125/173 (72.25%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. NCBI nr
Match: gi|743867305|ref|XP_011032695.1| (PREDICTED: uncharacterized protein LOC105131426 [Populus euphratica]) HSP 1 Score: 195.7 bits (496), Expect = 6.7e-47 Identity = 94/151 (62.25%), Postives = 118/151 (78.15%), Query Frame = 1
BLAST of CSPI06G22110.1 vs. NCBI nr
Match: gi|224085479|ref|XP_002307589.1| (hypothetical protein POPTR_0005s23230g [Populus trichocarpa]) HSP 1 Score: 195.3 bits (495), Expect = 8.7e-47 Identity = 93/151 (61.59%), Postives = 119/151 (78.81%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
|