CSPI06G06950.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCATCAAAATTCTTCGCCTTCTTAACTAAAGCGCTTCCCTCTCTCTTCTTGCTCTCTCCCTCCGTTGCTCACTCCGATCAGATTCCGATCAAAGATGCAGGCCCTTTCGAGGCGTCTAGTGCAGCAGCAGCAGCAGAGCCTCAGCTCTTCTTCCTCAATTTCTTCTATCAAGTTCATATGCCCTCTTTCTCATCACTGTAATTGCTTCTCTCTTCCTTCTGTGCTTCCATTTTCACATCGATTTCGTCCATTTTTAACGTCTTGAACATCTTGTTTTTTTTTTAAAAAAATATTTTTGCAGATTGTGGGGCTGATCGTCCACGATATGATTCCACTTTGGCTACGAGAGGTGTCGGGCACCTTGTCCGTAAGGGCACTGGTGGGAGATCGTCTGTTAGGTAACCTAGCCCTAGCTTTTTCGTGTTTGGATTCTTATATTTGATTGTTGGCTTTATGTTGTAGATGTAATGCTGGGTTTGAGTGCTTTGGAATGTTGATGGAAATTTAAGAAATTTAATGGGATGAAGATGAACAGTGGTACTTCATGCCTCAAATTGAATTTAAATTATTTTAAAAATCCTAAATTGGTATGACTAAGTATTGCTAAACACGATAGTCATATAAAAACACAAAAGAAAAAAAAAATCATCCCTCAACTAGGATTGGTTTATTCTATGGATTTTTACCTTCAGTGTTCTTAAAGTCACAATAATAAAAGTAGTAATAGTTGTAGTCATAACTCAAACTTTTATATGTTTTTTTAAGAATGTGGTAAATATTGTTTTGATCATTAGACAAGATATAGAGATTTTAAGTCTCTGTGCCTTTTCACGAAGCCATAAGCCTCTTATAGTTCAACAAAGGCATACTCAACGCTAGAAGTTAAAGCCTTGCCTCAAGATGGGTCTCGAGATGTTATTCTCAAAACCTTTTTATAACATTTGTGCTTCAAGTTTATAAGTTAATTAGTGGAAATCAAATATAATCTTTCAGTGTCTTTTTTAGTTGAAATACTTATAGCATTTTCCCATTGTCATTGAGGGAAGGATTAATTAGATATACTTTGTTTTATTGAGTAAGCTAAAAGATCATGGCACTACCCACTACGAACATTTTGACGTCATTCCATCTTTTATGGGATATTGAAGCAGGAAATTTTAATCTGAGCTGGTTTCTCTGTCGCTGTCAGATAATCCTAGTTTGTGCTTATCTGTTCTCTTTCAAGCATGCACATTAGGATTCTCAGGCAGATCAGATTATTGATATTTAATTCAATTTGTAGATTTAGTCTGTAGTGAATAAACCAAATTCTGTATCTGGTTTTCCTGATCTTACTGTTTTATCGCAAAATTGTTTTGCAGTGGGATTGTTGCTACTGTCTTTGGAGCTACTGGATTCCTTGGCCGCTATGTTGTACAGCAACTAGGTAATAGGTGAACATAAATGGTACTAGCATTCAACTTTCTTTTTGCTTAGATATGCAATTTATTATGTGCCTCTATAGCTTCTACTACTAGTGGGTTTTGGTAGCTTTGGCTCTATTCTTGATTATATGTAAGTTTTATGCTAAGCATGATTTTGGAAATGAATTATGTTTCAGCTAAAATGGGGTCCCAAGTGTTGGTCCCTTTTCGAGGTTCTGAAGATTCACCTCGACATCTTAAAATAATGGGAGATCTGGGACAGGTAGAGCAGTATATGACGTTTTGATGCCATGGATGATTGTACTATTTCTTTTTTCCATGTGTTGCTGAATGCTTTCTTTGCCCCCTCACTGTTAAATCAATCGCCTTAATTTCCCCCCCTTCAGATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCAGTAAAAGCTGTAATGGCAAAGGCTAACGTGGTCCTTAATCTTATTGGTATGGGTTTCTCATTCTTCTTCCTTCTTGTTAAATGTTTGAATTTTTTATTTTAGCCTTTTAAGATTAGAATTTACCATATTTGTTGACAGGAAGAGAGTATGAAACAAGAAACTACAGCTTTGAGGAAGTAAATCATTCCATGGCAGAACAACTTGCCACGGTATGCATCTGACTTCAATCCCACGTGGCTTGCCTTTCCCAAGGCCTATTGGTTGAAAATCTATTAAGCTAATATTAAGCTGGTGCCCATGATCCGGTGGATTTTGGGAGCAATTTGTAAGGGACCTAGTTAGAGTCGGAGATATATGGAGTTGTAGTAGAGTATTAATTTATTAGGACATTACTAAATTAGATAGTAAGTTTGTCAGGACTCTTAGTTATAAAATAGAGGGAATGGGTTGGTAGCTAGGGAGAAGAATTTTGTGAGATTTCTTTAGTTGGGAATTTGGGAGACTCTAGCCCTCTCGAAAGGTTAGTGGTTACCTTGTTACTTGTTCTTATGATATTATTGCACATTTTCAATATATTTCCATTTTAGTGTTCTAGAGTTTACGTTGTGTTCATGAGCATTTCCTTGTTAGGTGGTATCCTAACTAAATTTTACCCAATATATTGCTCAATTCTATTATGCATATAAATTATCGATAATTGTTGGCCGACATTTATGTGTTGGTAGAAGCATTTTTAAAGTGCTTGAAAATTTGGTAGAAGCATTTTTAAAGTGCTTGCAAATTTGATAGAAGCATTTTTCTTATCGATAGAGTCTTCCTTAGTTCCTCTACCATCTGAATATGAATTATTAAAGACAAGATAACGGAAAGGGATAGAGTACTTTCGTATATTATTCATTTATTTATTTTTAACTAAAGATGTTACATTTTTTTTCTTTTTGAGTCTGATGTAGATTAGATGTTTTCCCTCCTTTTAAATACTGTAGATTGCCAAAGAACATGGTGGTATCTTGAGATTTATACAAGTTTCCTGCCTGGGTGCATCTTCATCATCTCCATCCAGATTTCTAAGATCTAAAGCTGCTGGCGAGGAATCTGTTTTGAAGGCATTCCCTGAGGTAAGCAGTTATAATTTATTTCCTGATTTTGAGTTGATAATACCACATAAAGTTACGCTGGCAGTTTCAGACCATTAGAGAATACTACAAGTCTTCTATTGTCTATAACTATTCATTTATCATGTATTCATCTTTTATTCTTATGGGAGTACTCTTTCATTAAGGTTCAGTTGAGGTGAAGCCGTGTTCAAGATTAGACTGTATGGATAAAAAGCATGCTAAATTCAAATTCTTAGGTTCTAATTTGCAATTTACAATTTCAAACTTCAATTTCATATTTGAAACTTATTTCTCATAAATTATTGGATATTTTTTTAATGCTGTAGATTTTTAGTATAATTTTAATTTCAACTTTTCTCCAATTATTTAGGGGATATTGTCAGAACTAACATTTCAAAGATGTGCTTTTACAGGCTACAATTCTGAGACCTGCAACTATGATTGGTACAGAGGACCGTATTCTGAATCCATGGGCACATTTTGCTAAAAAATATGGCTTCATTCCCCTCTTTGGAAATGGATCTACAAAGTATGTATTTCATATCCGATATTGTATGGATCAAAATCACATTGGCAGGCATTGAATAGTTCAGATATTGTTGAGTACTTATTTTCTTATAGCTACCCTAACCACCAGTGCTATCTTTGCAGAATCCAACCTGTGTATGTTGTTGACGTTGCTGGTGGAATTGTTTCAGCGTTGAAAGACGATGGCACCAGCATTGGAAAAGTTTATGAACTAGGTGGTCCAGAGATCTATTCGGTGCATGATTTGGTATGTTATGTTTTTTTTTAACATTCTGCCCCCTGTCCAAGAAAAAAGAATAGAAATTTCATTATAAAGCTTCATGTTCTATGCAGGCAGAACTTATGTTTGACGTGATCCGTGAATGGCCTCACTACCTGAAAGTCCCTTTCCCTATTGCAAAGGTAAAAACAATGGAAGTTGATGATATACAATGTTGTACCTTTATGCTTTCCCTCAAGTCTTAATAAATCGGCCACCATATTTCTTCTCTTATATTGTGTTGCTATCATGCAAAAAATAGTCACATCTTTTATTTTGTTGGTCCTTATATTGTTACTTCCTCTTGCCTTTCCTTCCCCCCACTCATTGCATAAGAAATTCAGACCATGCTAGATGATTTTTTTTAGTGATGGTATACACTTAGGAAAGTATAAGTTGCTCTCCTTGCTGGCCTTTGTTGGATTATATTGCAGATCAAGCGAAGCTTTGTTTTTAGATATTGTTCGACCTGTTTGATTTTGTTTTCTAAAACTAAAAGCTGCTGTTTGGCCTCAGGCAATTGCTACCCCACGAGAAATATTACTTAACAAAGTCCCGTTTCCATTACCAACGCCAGCCATTTTCAATCTGGATCAGATCCTAGCTCTAACACAAGATACAGTTGTTTCTGAAAAAGGTAAGCATCTCAATTCTTTTCCCCTTCCAACAGGTGACGTTGTCGTCTAATACTCTCTGATCTTGCTATTGGATTTGCAGCATTGACTTTCAATGATCTTGGGATTGTACCACATAAGTTGAAGGGATATCCTGTTGAGTTTCTTATATCGTACCGTAAAGGTGGCCCGCAATTCGGTTCGACAGTCAGTGAAAGAGTCAATCCCGATTCTTTTCCATAGGCTTCATTTGAATTTTTTCTGAAGCCCCCTGGATATTTTGTATTAACTTAGTTGAAAAGCTTTGAGAACGGCCTGGTTTATGTCTCCATTTGTTAAAATAAAATGGAGAATGTTTCGAGTTCAACCCTCGTGTATTCTTATCTTCTTCATTCATGGTTTAGTAGAATGCACAGTTTATTTGGTGTTGTAATTAATAAAGGCTGGAATGCTTGGTTACAGCATACTATGGTCTTAAAATGTGTTTTTTTCAGGAAAAAGAAAGAGGTACAAATTTTATCTATTTTATCAAGTTTGAGCAAATTTGTTGGATGCGGATGGTGGTTGTTGGTATATTCTATAGAACTTTTGGAGTGGTACTCCAAATTGCGAAGTGAAATCTAACACATCAATTAGTTCACTTTAGTTGCTAAAT ATGCAGGCCCTTTCGAGGCGTCTAGTGCAGCAGCAGCAGCAGAGCCTCAGCTCTTCTTCCTCAATTTCTTCTATCAAGTTCATATGCCCTCTTTCTCATCACTATTGTGGGGCTGATCGTCCACGATATGATTCCACTTTGGCTACGAGAGGTGTCGGGCACCTTGTCCGTAAGGGCACTGGTGGGAGATCGTCTGTTAGTGGGATTGTTGCTACTGTCTTTGGAGCTACTGGATTCCTTGGCCGCTATGTTGTACAGCAACTAGCTAAAATGGGGTCCCAAGTGTTGGTCCCTTTTCGAGGTTCTGAAGATTCACCTCGACATCTTAAAATAATGGGAGATCTGGGACAGATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCAGTAAAAGCTGTAATGGCAAAGGCTAACGTGGTCCTTAATCTTATTGGAAGAGAGTATGAAACAAGAAACTACAGCTTTGAGGAAGTAAATCATTCCATGGCAGAACAACTTGCCACGATTGCCAAAGAACATGGTGGTATCTTGAGATTTATACAAGTTTCCTGCCTGGGTGCATCTTCATCATCTCCATCCAGATTTCTAAGATCTAAAGCTGCTGGCGAGGAATCTGTTTTGAAGGCATTCCCTGAGGCTACAATTCTGAGACCTGCAACTATGATTGGTACAGAGGACCGTATTCTGAATCCATGGGCACATTTTGCTAAAAAATATGGCTTCATTCCCCTCTTTGGAAATGGATCTACAAAAATCCAACCTGTGTATGTTGTTGACGTTGCTGGTGGAATTGTTTCAGCGTTGAAAGACGATGGCACCAGCATTGGAAAAGTTTATGAACTAGGTGGTCCAGAGATCTATTCGGTGCATGATTTGGCAGAACTTATGTTTGACGTGATCCGTGAATGGCCTCACTACCTGAAAGTCCCTTTCCCTATTGCAAAGGCAATTGCTACCCCACGAGAAATATTACTTAACAAAGTCCCGTTTCCATTACCAACGCCAGCCATTTTCAATCTGGATCAGATCCTAGCTCTAACACAAGATACAGTTGTTTCTGAAAAAGCATTGACTTTCAATGATCTTGGGATTGTACCACATAAGTTGAAGGGATATCCTGTTGAGTTTCTTATATCGTACCGTAAAGGTGGCCCGCAATTCGGTTCGACAGTCAGTGAAAGAGTCAATCCCGATTCTTTTCCATAG ATGCAGGCCCTTTCGAGGCGTCTAGTGCAGCAGCAGCAGCAGAGCCTCAGCTCTTCTTCCTCAATTTCTTCTATCAAGTTCATATGCCCTCTTTCTCATCACTATTGTGGGGCTGATCGTCCACGATATGATTCCACTTTGGCTACGAGAGGTGTCGGGCACCTTGTCCGTAAGGGCACTGGTGGGAGATCGTCTGTTAGTGGGATTGTTGCTACTGTCTTTGGAGCTACTGGATTCCTTGGCCGCTATGTTGTACAGCAACTAGCTAAAATGGGGTCCCAAGTGTTGGTCCCTTTTCGAGGTTCTGAAGATTCACCTCGACATCTTAAAATAATGGGAGATCTGGGACAGATAGTACCAATGAAATACAATCCAAGAGATGAAAATTCAGTAAAAGCTGTAATGGCAAAGGCTAACGTGGTCCTTAATCTTATTGGAAGAGAGTATGAAACAAGAAACTACAGCTTTGAGGAAGTAAATCATTCCATGGCAGAACAACTTGCCACGATTGCCAAAGAACATGGTGGTATCTTGAGATTTATACAAGTTTCCTGCCTGGGTGCATCTTCATCATCTCCATCCAGATTTCTAAGATCTAAAGCTGCTGGCGAGGAATCTGTTTTGAAGGCATTCCCTGAGGCTACAATTCTGAGACCTGCAACTATGATTGGTACAGAGGACCGTATTCTGAATCCATGGGCACATTTTGCTAAAAAATATGGCTTCATTCCCCTCTTTGGAAATGGATCTACAAAAATCCAACCTGTGTATGTTGTTGACGTTGCTGGTGGAATTGTTTCAGCGTTGAAAGACGATGGCACCAGCATTGGAAAAGTTTATGAACTAGGTGGTCCAGAGATCTATTCGGTGCATGATTTGGCAGAACTTATGTTTGACGTGATCCGTGAATGGCCTCACTACCTGAAAGTCCCTTTCCCTATTGCAAAGGCAATTGCTACCCCACGAGAAATATTACTTAACAAAGTCCCGTTTCCATTACCAACGCCAGCCATTTTCAATCTGGATCAGATCCTAGCTCTAACACAAGATACAGTTGTTTCTGAAAAAGCATTGACTTTCAATGATCTTGGGATTGTACCACATAAGTTGAAGGGATATCCTGTTGAGTTTCTTATATCGTACCGTAAAGGTGGCCCGCAATTCGGTTCGACAGTCAGTGAAAGAGTCAATCCCGATTCTTTTCCATAG
BLAST of CSPI06G06950.1 vs. Swiss-Prot
Match: NDUA9_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=1 SV=2) HSP 1 Score: 614.0 bits (1582), Expect = 1.2e-174 Identity = 296/402 (73.63%), Postives = 351/402 (87.31%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. Swiss-Prot
Match: NDUA9_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.6e-59 Identity = 129/261 (49.43%), Postives = 181/261 (69.35%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. Swiss-Prot
Match: NDUA9_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 2.1e-59 Identity = 124/261 (47.51%), Postives = 176/261 (67.43%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. Swiss-Prot
Match: NDUA9_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2 SV=2) HSP 1 Score: 230.7 bits (587), Expect = 2.8e-59 Identity = 128/261 (49.04%), Postives = 181/261 (69.35%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. Swiss-Prot
Match: NDUA9_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=2) HSP 1 Score: 229.9 bits (585), Expect = 4.8e-59 Identity = 137/329 (41.64%), Postives = 199/329 (60.49%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TrEMBL
Match: A0A0A0KA64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087960 PE=4 SV=1) HSP 1 Score: 787.7 bits (2033), Expect = 6.6e-225 Identity = 400/402 (99.50%), Postives = 400/402 (99.50%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TrEMBL
Match: M5VN06_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006705mg PE=4 SV=1) HSP 1 Score: 662.5 bits (1708), Expect = 3.2e-187 Identity = 327/402 (81.34%), Postives = 366/402 (91.04%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TrEMBL
Match: B9GRC3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s25720g PE=4 SV=1) HSP 1 Score: 659.8 bits (1701), Expect = 2.1e-186 Identity = 323/402 (80.35%), Postives = 366/402 (91.04%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TrEMBL
Match: A9PE76_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 2.3e-185 Identity = 322/402 (80.10%), Postives = 365/402 (90.80%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TrEMBL
Match: A0A0B2SVI5_GLYSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Glycine soja GN=glysoja_025325 PE=4 SV=1) HSP 1 Score: 655.6 bits (1690), Expect = 3.9e-185 Identity = 324/402 (80.60%), Postives = 362/402 (90.05%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. TAIR10
Match: AT2G20360.1 (AT2G20360.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 614.0 bits (1582), Expect = 6.6e-176 Identity = 296/402 (73.63%), Postives = 351/402 (87.31%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. NCBI nr
Match: gi|778711581|ref|XP_011656761.1| (PREDICTED: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 787.7 bits (2033), Expect = 9.5e-225 Identity = 400/402 (99.50%), Postives = 400/402 (99.50%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. NCBI nr
Match: gi|659120025|ref|XP_008459972.1| (PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 773.5 bits (1996), Expect = 1.8e-220 Identity = 387/402 (96.27%), Postives = 398/402 (99.00%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. NCBI nr
Match: gi|1009165639|ref|XP_015901149.1| (PREDICTED: NADH dehydrogenase [ubiquinone]) HSP 1 Score: 664.8 bits (1714), Expect = 9.3e-188 Identity = 332/402 (82.59%), Postives = 365/402 (90.80%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. NCBI nr
Match: gi|595795804|ref|XP_007201067.1| (hypothetical protein PRUPE_ppa006705mg [Prunus persica]) HSP 1 Score: 662.5 bits (1708), Expect = 4.6e-187 Identity = 327/402 (81.34%), Postives = 366/402 (91.04%), Query Frame = 1
BLAST of CSPI06G06950.1 vs. NCBI nr
Match: gi|224065531|ref|XP_002301843.1| (hypothetical protein POPTR_0002s25720g [Populus trichocarpa]) HSP 1 Score: 659.8 bits (1701), Expect = 3.0e-186 Identity = 323/402 (80.35%), Postives = 366/402 (91.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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