CSPI06G05980.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGTAAGTCATACCACGATGGTGGACATTCTATTATTTACTTAAGGTAGTTGTAGTTGCTAGGTTGTATGTTAGTTATGCTATTCTTTTACGGCGTTATGAACTTTTTATTCCCCTCAATGTCAATTTGTTAAAGAAATGAAAATTATTAAGTCAGTCAAGTAGCTACTTGTTTTGTGCCTTTTCTGCCCTCTCTCAATCATTGTATTTGTACCATTCAACTTGTACTATAGTTTCCAAACTTGGTAGAACAGTTTGATTTCATAATTTCGTAGCGAAGGGTATGATAAAATTGTCCTTTGGCTCTTCCCTTGGTAACACAAGGGAAAAAATGATTGTATATCTCAAGGGGAAACAACTATATGCTATTCATGAAAGACAAAAGGATGGCATGATGTCGAACAAATATTCTCATAATTTCGCTGGCCTTCAAAGTGTTAAAGATTGAGTCTTTCAGGGTAGGGAGAGGGAGCATAGTGAGATTTGGTTTTTGACTAGATTTCACATATCTATTTGGACTTCGATTTCAAAGAACTACTGTAATTATTCCATTAGTAACACTTTACTTAATTGGTCTCCCTTCTTTTAGTAGGGGTGTTTTGGTGGATTAGTTTTTTTTATGCCCTTGTATTCTACCATTTTTTCTCAATGAAAGTTGTCGATCTCATTAAAAAAAAAAAAAACCATACTGGACAATACTTGAAAAAAGTCATCATTGTACATTTCGTCTGACATATTTGTAATTTGTTGTTATTCTTTTTGGTACAGGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGCGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTAT ATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGCGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTAT ATGGCAACTTCAATGAGGTTGTTATCCACCTATCCAAGAACTAGTAAACTTCAATCTCCAAATTATCCAAGAACAAGAGTTTCAGTTCCGGGCCTCGTAGCATGCTTTTATGACACTTATGTGCTCCACGGTCACCTTCACCATCAATGTTGTTCCTTCTACGTGACCAAACCTTCAGTGCTGAAGAACTTCAAGAAGATGGCCTTGTCCATTAGGGGGAGTGTGGAAGGGAATCCATTTGACCCTCCTTCGAGTAACTCTAATGGCAGAACGAGACTGATACGGATTATTCAAGCTATTCAAACCAAGTTGAATGCGAGAATCAACGAGTTAAGAAAAAATCTTCCATTGAAAATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACAGTTATTGGTCAAACAGGCGATTGGGATATTCTATCTGCTGCATTGGCCGTGGTTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCTCTTTTGAACAAAATTAAAGACCTAATAACCATGTTCAATTATTGGAAGGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATTTGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTACACAATGTAATTCCTATAATTTAT
BLAST of CSPI06G05980.1 vs. Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2) HSP 1 Score: 112.8 bits (281), Expect = 4.7e-24 Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 9.7e-14 Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 9.4e-09 Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 3.6e-08 Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TrEMBL
Match: A0A0A0K9U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G077990 PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 1.9e-120 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TrEMBL
Match: A0A067HDA0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027310mg PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 2.4e-59 Identity = 129/209 (61.72%), Postives = 155/209 (74.16%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TrEMBL
Match: W9RWD2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023288 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 3.1e-59 Identity = 128/212 (60.38%), Postives = 153/212 (72.17%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TrEMBL
Match: M5XTJ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021878mg PE=4 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 1.9e-56 Identity = 123/205 (60.00%), Postives = 147/205 (71.71%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TrEMBL
Match: A0A061FI79_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_046894 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 3.6e-55 Identity = 118/187 (63.10%), Postives = 145/187 (77.54%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TAIR10
Match: AT3G56830.1 (AT3G56830.1 Protein of unknown function (DUF565)) HSP 1 Score: 171.4 bits (433), Expect = 6.2e-43 Identity = 86/155 (55.48%), Postives = 121/155 (78.06%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. TAIR10
Match: AT1G65420.1 (AT1G65420.1 Protein of unknown function (DUF565)) HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25 Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. NCBI nr
Match: gi|449454528|ref|XP_004145006.1| (PREDICTED: ycf20-like protein [Cucumis sativus]) HSP 1 Score: 439.9 bits (1130), Expect = 2.7e-120 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. NCBI nr
Match: gi|659120263|ref|XP_008460100.1| (PREDICTED: ycf20-like protein [Cucumis melo]) HSP 1 Score: 401.4 bits (1030), Expect = 1.0e-108 Identity = 207/221 (93.67%), Postives = 209/221 (94.57%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. NCBI nr
Match: gi|641867097|gb|KDO85781.1| (hypothetical protein CISIN_1g027310mg [Citrus sinensis]) HSP 1 Score: 236.9 bits (603), Expect = 3.4e-59 Identity = 129/209 (61.72%), Postives = 155/209 (74.16%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. NCBI nr
Match: gi|703129327|ref|XP_010104337.1| (hypothetical protein L484_023288 [Morus notabilis]) HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59 Identity = 128/212 (60.38%), Postives = 153/212 (72.17%), Query Frame = 1
BLAST of CSPI06G05980.1 vs. NCBI nr
Match: gi|985467332|ref|XP_015389730.1| (PREDICTED: ycf20-like protein isoform X1 [Citrus sinensis]) HSP 1 Score: 235.3 bits (599), Expect = 9.9e-59 Identity = 128/209 (61.24%), Postives = 155/209 (74.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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