CSPI05G18690.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI05G18690.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr5 : 19781866 .. 19782186 (-)
Sequence length321
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTCAGTTACAAAGTTCATTAGAAAACAAGGTCCAATCCGACAAAGAGTATTGCAAATTTGATAGGCTTTCTTTTCACACCGTTCGAAGGCACAAAGAGCGGTCTAATCTTTCTCTCCGTAATATTCTTTGCGCCTTCCAGTCTTGTCATTATGAGAATTTTTGCAATATTCTTTGCACATTTTTTTTCTTCTTTGGGCCTTTTATGCTTAATAATGGGGATCTGCTCAATGACAAATGTGAGAAGACAGGTCCGAAGGCGCAATTCAATATGCGTTGCGTGAGATGCAAAGAGTTCGAGACAAGACGAAATTGA

mRNA sequence

ATGGAGCCTCAGTTACAAAGTTCATTAGAAAACAAGGTCCAATCCGACAAAGAGTATTGCAAATTTGATAGGCTTTCTTTTCACACCGTTCGAAGGCACAAAGAGCGGTCTAATCTTTCTCTCCGTAATATTCTTTGCGCCTTCCAGTCTTGTCATTATGAGAATTTTTGCAATATTCTTTGCACATTTTTTTTCTTCTTTGGGCCTTTTATGCTTAATAATGGGGATCTGCTCAATGACAAATGTGAGAAGACAGGTCCGAAGGCGCAATTCAATATGCGTTGCGTGAGATGCAAAGAGTTCGAGACAAGACGAAATTGA

Coding sequence (CDS)

ATGGAGCCTCAGTTACAAAGTTCATTAGAAAACAAGGTCCAATCCGACAAAGAGTATTGCAAATTTGATAGGCTTTCTTTTCACACCGTTCGAAGGCACAAAGAGCGGTCTAATCTTTCTCTCCGTAATATTCTTTGCGCCTTCCAGTCTTGTCATTATGAGAATTTTTGCAATATTCTTTGCACATTTTTTTTCTTCTTTGGGCCTTTTATGCTTAATAATGGGGATCTGCTCAATGACAAATGTGAGAAGACAGGTCCGAAGGCGCAATTCAATATGCGTTGCGTGAGATGCAAAGAGTTCGAGACAAGACGAAATTGA
Homology
[Close]
BLAST of CSPI05G18690.1 vs. TrEMBL
Match: A0A0A0KRC9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G546580 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.3e-55
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKERSNLSLRNILCAFQSCHYENFCNIL 60
           MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKE SNLSLRNILCAFQSCHYENFCNIL
Sbjct: 1   MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKEWSNLSLRNILCAFQSCHYENFCNIL 60

Query: 61  CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN 107
           CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN
Sbjct: 61  CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN 106

[Close]
BLAST of CSPI05G18690.1 vs. NCBI nr
Match: gi|700196262|gb|KGN51439.1| (hypothetical protein Csa_5G546580 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.9e-55
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1 

Query: 1   MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKERSNLSLRNILCAFQSCHYENFCNIL 60
           MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKE SNLSLRNILCAFQSCHYENFCNIL
Sbjct: 1   MEPQLQSSLENKVQSDKEYCKFDRLSFHTVRRHKEWSNLSLRNILCAFQSCHYENFCNIL 60

Query: 61  CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN 107
           CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN
Sbjct: 61  CTFFFFFGPFMLNNGDLLNDKCEKTGPKAQFNMRCVRCKEFETRRN 106

The following BLAST results are available for this feature:
BLAST of CSPI05G18690.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI05G18690.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRC9_CUCSA1.3e-5599.06Uncharacterized protein OS=Cucumis sativus GN=Csa_5G546580 PE=4 SV=1[more]
BLAST of CSPI05G18690.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI05G18690.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196262|gb|KGN51439.1|1.9e-5599.06hypothetical protein Csa_5G546580 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI05G18690CSPI05G18690gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI05G18690.1CSPI05G18690.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI05G18690.1.cds1CSPI05G18690.1.cds1CDS