CSPI04G27510.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G27510.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Alkaline phosphatase D
Location	Chr4 : 24143351 .. 24145325 (+)
Sequence length	405

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACCATGATGAAGCATTTAAATGTGCATACTCAAAGCGATTAGATCATACTGAAGTCTTATTGTGGAAAACGCGTTGATTCTTTTCAAACCAAATTTCTACTAATAAAGCCTTGACTGCATTGCACCATAGTATTAATGAGGTTCTCTTTAAATTTGGTCCAGTTCACAATTGTACTTTGTATTCTTAAATTAATGAGGTTTACTAATAAAGGCTAATCTAATACCATTAATAACTCTAGTCAACAGTTCAGAATTTACTTTTGGGTTTCTGGTTTCTCGGTTTTTGTTCTTGTTCATGGGACACATGTTATGGTTTCATTGCTGCTTTTCTTTTTTTCTTCTTTCTTTTTGTTTACTTGTCTTGGATTTTGTACCTTTGAGTATTAGTCTCTTTTTATTTCCTTAACGAACGATCTTATATCTCATTAAAAAAGAAAAGAAAAGAGTGATAATTTCAAATTATTCAATGAGACTCGTATGGCATTTCTTGTCCATCTAGGGACATTATTTGTCAGTTTGCTAAGCAACACTACCCATGCTATTGTGTGTGTGTGACTTATTAGAGAGAGAAGGAGAGAGAAAGAGAGTGAGAGAAGAAGGGGACGAGTGTAATAGTAAAATAGAAAGGAGAAAGGAATGGTACAAGATTAATAGATAATGAATTGTATATTAAATTGGAAAAACAATTGTGTACTTTATTGTTGGGTTAGCCTTAGACCTTGGCATTTTGTTGTGATAAATTATTATTTATTTATTTTGGGCAAGATACAAACTTTCACAGGGAGTTGAGTAACGCACCAGTGACGAGAAGATAAATTGATTTTTATAGCACTGTCATACTTGAATTGTTAATTTACTTCTTAGTAGATATTTTCTGTTAAATTCCTAACCACACATCTACCATTCTAGGCGCAAGCAGCATGGTGTGTATGCATCATATATGTTCGGCCCTGTAGGTAAACAAATTAAGGTACAACTTAGCTTGGTGATCTTTCGATGATTCTCATCTTCATAATTTGATTTTAATGATGTTTGTATTATATATTTATCCTTCATCAAATATGTTTGTCACCTGAATTTTTCTAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACGTGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTGTCTCAAGCATACTTTGTGTACAAGCCTCTAGCCTGTGCACTTTTTCTGTAGATCTACTCTTACACTCATTTCGCATTAAATCTTATCATGAGAAATCTTATCTTCCTTGGGTAACATAGTGTAGTAGTTGTAAGCTTTATTTTTATGAGTACATGTGACTGGTATTCTACAATTTAGGTTATATCAAATCTTTCCGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGATCCTACTTTTTACACAAGCATCATTGCTCTTCAAGGGGACGTTTGGTTAGCTATAAAAAGAATGAGTTTGAGTTGAGTTAGTAATAATTGTTGAAACGTTATTGGGGGAGCTGACACGAATAACTATTGAAAGCAATAAACACAAAATCAAGGCTTACGTGATAAACCCTAAACCCTAAATAGAATAGTACAAAGAGATAAAAAAGGAAAACATATTTATGGTAAATTAGAGCAAACTCCCAATGGGCTAAGCTCACTAATTCTAATAATAACGATGTGAGAAACGTGAGTTTATGCCAATAGCAAGTTAATAAACCTCTTTAATTATTGGCGAATCAAATAGGGGATTGGTTTTTTCACCCACCTAACCCAACTCTCTCAAATTACTCAAGTCGTCAAACACCACTAAATAACAAACTGCAAACC

mRNA sequence

ATGGAGCACCATGATGAAGCATTTAAATGTGCATACTCAAAGCGATTAGATCATACTGAAGTCTTATTGCGCAAGCAGCATGGTGTGTATGCATCATATATGTTCGGCCCTGTAGGTAAACAAATTAAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACGTGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTTATATCAAATCTTTCCGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGA

Coding sequence (CDS)

ATGGAGCACCATGATGAAGCATTTAAATGTGCATACTCAAAGCGATTAGATCATACTGAAGTCTTATTGCGCAAGCAGCATGGTGTGTATGCATCATATATGTTCGGCCCTGTAGGTAAACAAATTAAGGTTATCCTATTAGATACTAGATATCACCGTGATCCGCTGTTTAGTGATGGAACTATTTTGGGTACTGCTCAATGGACGTGGCTGAAGAGGGAGCTTAAGGGGCCAGAGTCGGCAGTAACAATAATTGGGTCATCCATTCAGGTTATATCAAATCTTTCCGCAACCACCAGACCGTTGTTCTATTTGGAGTCTTGGGGACGTTTCCCAAAGGAAAGAGATCTCCTTTTCAAGTTGATTGCAGATAGCAAGGTAAAAATCTGTCATGCACACCTCTGA

Homology

[Close]

BLAST of CSPI04G27510.1 vs. TrEMBL
Match: A0A0A0L3H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665680 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 34  MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 93
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60

Query: 94  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 135
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL
Sbjct: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 101

[Close]

BLAST of CSPI04G27510.1 vs. TrEMBL
Match: B9H5Z1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28090g PE=4 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           R Q GVY SYMFGPVG+QIKVILLDTRYHRDPL SDG++LG++QWTWL++EL GP+SA+T
Sbjct: 176 RNQEGVYTSYMFGPVGRQIKVILLDTRYHRDPLRSDGSVLGSSQWTWLEKELNGPKSAIT 235

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK 127
           IIGSS+QVISNLSATTRPLF LESWGRFPKERD LFKLIAD+K
Sbjct: 236 IIGSSVQVISNLSATTRPLFSLESWGRFPKERDRLFKLIADTK 278

[Close]

BLAST of CSPI04G27510.1 vs. TrEMBL
Match: D7UDI2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00220 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 7.2e-43
Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQ GVY SY FGPV +QIKVILLDTRYHRDPLFSDG+ILG++QWTWL+ ELKGP SA+T
Sbjct: 172 RKQAGVYTSYTFGPVDRQIKVILLDTRYHRDPLFSDGSILGSSQWTWLESELKGPASALT 231

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK 127
           IIGSSIQVISNLSA T P+FYLE WGRFPKER+ LFKLIADSK
Sbjct: 232 IIGSSIQVISNLSAITGPIFYLECWGRFPKERERLFKLIADSK 274

[Close]

BLAST of CSPI04G27510.1 vs. TrEMBL
Match: A0A067H006_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 11  AYSKRLDHTEVLLRKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTW 70
           AYS RL H    L  + G+Y SY FGPVG+QIK+ILLDTRYHRDPL SDGTILG+ QWTW
Sbjct: 122 AYS-RLRHN---LNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTW 181

Query: 71  LKRELKGPESAVTIIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK 127
           L++EL GP SA+TII SSIQVISNLSATT PLFY+ESWGRFPKERD LF+LIADSK
Sbjct: 182 LEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSK 233

[Close]

BLAST of CSPI04G27510.1 vs. TrEMBL
Match: A0A067H0E6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-42
Identity = 88/116 (75.86%), Postives = 98/116 (84.48%), Query Frame = 1


Query: 11  AYSKRLDHTEVLLRKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTW 70
           AYS RL H    L  + G+Y SY FGPVG+QIK+ILLDTRYHRDPL SDGTILG+ QWTW
Sbjct: 122 AYS-RLRHN---LNTKAGIYTSYTFGPVGRQIKIILLDTRYHRDPLSSDGTILGSTQWTW 181

Query: 71  LKRELKGPESAVTIIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK 127
           L++EL GP SA+TII SSIQVISNLSATT PLFY+ESWGRFPKERD LF+LIADSK
Sbjct: 182 LEKELNGPSSAITIIVSSIQVISNLSATTGPLFYMESWGRFPKERDRLFQLIADSK 233

[Close]

BLAST of CSPI04G27510.1 vs. TAIR10
Match: AT5G42370.2 (AT5G42370.2 Calcineurin-like metallo-phosphoesterase superfamily protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-42
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQ GVYASY +GP  +++KVI+LDTRYHRDPL SDG+ILG  QW WL+ EL GP S +T
Sbjct: 157 RKQAGVYASYTYGPPNRKVKVIVLDTRYHRDPLRSDGSILGDTQWDWLENELSGPRSEIT 216

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK 127
           IIGSS+QVISNLSATT PLFY+ESWGRFPKER  LFKLIAD+K
Sbjct: 217 IIGSSVQVISNLSATTGPLFYMESWGRFPKERKRLFKLIADTK 259

[Close]

BLAST of CSPI04G27510.1 vs. NCBI nr
Match: gi|778697343|ref|XP_011654300.1| (PREDICTED: uncharacterized protein LOC101210375 isoform X2 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT
Sbjct: 176 RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 235

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 129
           IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 236 IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]

BLAST of CSPI04G27510.1 vs. NCBI nr
Match: gi|778697340|ref|XP_011654299.1| (PREDICTED: uncharacterized protein LOC101210375 isoform X1 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-53
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT
Sbjct: 176 RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 235

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 129
           IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 236 IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]

BLAST of CSPI04G27510.1 vs. NCBI nr
Match: gi|659105247|ref|XP_008453048.1| (PREDICTED: uncharacterized protein LOC103493872 isoform X2 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQHGVYASYMFGP+GKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT
Sbjct: 176 RKQHGVYASYMFGPIGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 235

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 129
           IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 236 IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]

BLAST of CSPI04G27510.1 vs. NCBI nr
Match: gi|659105243|ref|XP_008453047.1| (PREDICTED: uncharacterized protein LOC103493872 isoform X1 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 24  RKQHGVYASYMFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 83
           RKQHGVYASYMFGP+GKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT
Sbjct: 176 RKQHGVYASYMFGPIGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVT 235

Query: 84  IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKVK 129
           IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSK K
Sbjct: 236 IIGSSIQVISNLSATTRPLFYLESWGRFPKERDLLFKLIADSKRK 280

[Close]

BLAST of CSPI04G27510.1 vs. NCBI nr
Match: gi|700200406|gb|KGN55564.1| (hypothetical protein Csa_4G665680 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.2e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 34  MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 93
           MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS
Sbjct: 1   MFGPVGKQIKVILLDTRYHRDPLFSDGTILGTAQWTWLKRELKGPESAVTIIGSSIQVIS 60

Query: 94  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 135
           NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL
Sbjct: 61  NLSATTRPLFYLESWGRFPKERDLLFKLIADSKVKICHAHL 101

The following BLAST results are available for this feature:

BLAST of CSPI04G27510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G27510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3H3_CUCSA	2.2e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G665680 PE=4 SV=1	[more]
B9H5Z1_POPTR	2.3e-44	82.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s28090g PE=4 SV=2	[more]
D7UDI2_VITVI	7.2e-43	82.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00220 PE=4 SV=...	[more]
A0A067H006_CITSI	1.6e-42	75.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1	[more]
A0A067H0E6_CITSI	1.6e-42	75.86	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013940mg PE=4 SV=1	[more]

BLAST of CSPI04G27510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42370.2	1.9e-42	74.76	Calcineurin-like metallo-phosphoesterase superfamily protein	[more]

BLAST of CSPI04G27510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697343\|ref\|XP_011654300.1\|	1.7e-53	99.05	PREDICTED: uncharacterized protein LOC101210375 isoform X2 [Cucumis sativus]	[more]
gi\|778697340\|ref\|XP_011654299.1\|	1.7e-53	99.05	PREDICTED: uncharacterized protein LOC101210375 isoform X1 [Cucumis sativus]	[more]
gi\|659105247\|ref\|XP_008453048.1\|	2.2e-53	98.10	PREDICTED: uncharacterized protein LOC103493872 isoform X2 [Cucumis melo]	[more]
gi\|659105243\|ref\|XP_008453047.1\|	2.2e-53	98.10	PREDICTED: uncharacterized protein LOC103493872 isoform X1 [Cucumis melo]	[more]
gi\|700200406\|gb\|KGN55564.1\|	3.2e-52	100.00	hypothetical protein Csa_4G665680 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018946	Alk_phosphatase_PhoD-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G27510	CSPI04G27510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G27510.1	CSPI04G27510.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G27510.1.cds1	CSPI04G27510.1.cds1	CDS
CSPI04G27510.1.cds2	CSPI04G27510.1.cds2	CDS
CSPI04G27510.1.cds3	CSPI04G27510.1.cds3	CDS
CSPI04G27510.1.cds4	CSPI04G27510.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G27510.1.utr3p1	CSPI04G27510.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018946	Alkaline phosphatase D-related	PFAM	PF09423	PhoD	coord: 25..127 score: 6.
None	No IPR available	PANTHER	PTHR33987	FAMILY NOT NAMED	coord: 25..128 score: 1.7