CSPI04G21070.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G21070.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 19501328 .. 19501957 (-)
Sequence length279
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTTGGTTATCACTTTCACAATCTCATCGTTTATCATCTTCGTTTAATTTTTTTTCCCTTTGGATCGTTAAGAATTCCCCTGCTTGTCCTGAGAGTTTTTTGTTATTCAATAGAACTACTACCCCAGTTGCAGTTAGCTTTTTCAGACCCGTGAATCTTCAGACGATGAACACTTTCGGGAGGAATTTTCAAGAACTGATGTGGTTACTACTCATTTCGTCGATGCCCATTTGAGGAAATCAGAAAATCATTCTACCCATTGGAAGAAACCAGCTGACAATGTTACTGGGTATGGTGGGATTCCAGTTTCCGGCGAGGCGAGGAGAGAGAACGACATGGAAGAAGGGAAGAATGACAGCGACACTGATGGGAATACCACTGAAGTTCGGTAGCGGCGGCGAGAGTTTGATTAAGGAAATTGAAGCGGAATAGGACTGAGAAGAAGGATTTGAAAATTTCTTTGGAGAAATTGGAATCCTCGAACGAGATAGTGAGAACAAAATCTCAACAGTACGATTTAACAAAAAAGGAAGTGGGTTTATGATGAGAGTTTCCCAATTTTCTCCAATAGTTTGTGTATTTTTTTTAACATAAAGTATACAATTTCAATTTTGTTTATATTGAG

mRNA sequence

ATGATTCTTGGTTATCACTTTCACAATCTCATCACCCGTGAATCTTCAGACGATGAACACTTTCGGGAGGAATTTTCAAGAACTGATGTGGTTACTACTCATTTCGTCGATGCCCATTTGAGGAAATCAGAAAATCATTCTACCCATTGGAAGAAACCAGCTGACAATGTTACTGGGTATGGTGGGATTCCAGTTTCCGGCGAGGCGAGGAGAGAGAACGACATGGAAGAAGGGAAGAATGACAGCGACACTGATGGGAATACCACTGAAGTTCGGTAG

Coding sequence (CDS)

ATGATTCTTGGTTATCACTTTCACAATCTCATCACCCGTGAATCTTCAGACGATGAACACTTTCGGGAGGAATTTTCAAGAACTGATGTGGTTACTACTCATTTCGTCGATGCCCATTTGAGGAAATCAGAAAATCATTCTACCCATTGGAAGAAACCAGCTGACAATGTTACTGGGTATGGTGGGATTCCAGTTTCCGGCGAGGCGAGGAGAGAGAACGACATGGAAGAAGGGAAGAATGACAGCGACACTGATGGGAATACCACTGAAGTTCGGTAG
Homology
[Close]
BLAST of CSPI04G21070.1 vs. TrEMBL
Match: A0A0A0KYW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572300 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 5.7e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 10 LITRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGIPVSGEA 69
          ++TRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGG PVSGEA
Sbjct: 2  ILTRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGFPVSGEA 61

Query: 70 RRENDMEEGKNDSDTDGNTTEVR 93
          RRENDMEEGKNDSDTDGNTTEVR
Sbjct: 62 RRENDMEEGKNDSDTDGNTTEVR 84

[Close]
BLAST of CSPI04G21070.1 vs. TrEMBL
Match: A0A0A0KTA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003690 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 60/72 (83.33%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 21  FREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGIPVSGEARRENDMEEGKN 80
           F   FSRTD VTTHFVDAHLRKSEN STH KKP DNVTGYGGIPVSGE RRENDMEEG+N
Sbjct: 72  FGRNFSRTDAVTTHFVDAHLRKSENLSTHLKKP-DNVTGYGGIPVSGEERRENDMEEGRN 131

Query: 81  DSDTDGNTTEVR 93
           D   DGNTTEVR
Sbjct: 132 DGGADGNTTEVR 142

[Close]
BLAST of CSPI04G21070.1 vs. NCBI nr
Match: gi|700199727|gb|KGN54885.1| (hypothetical protein Csa_4G572300 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 8.2e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1 

Query: 10 LITRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGIPVSGEA 69
          ++TRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGG PVSGEA
Sbjct: 2  ILTRESSDDEHFREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGFPVSGEA 61

Query: 70 RRENDMEEGKNDSDTDGNTTEVR 93
          RRENDMEEGKNDSDTDGNTTEVR
Sbjct: 62 RRENDMEEGKNDSDTDGNTTEVR 84

[Close]
BLAST of CSPI04G21070.1 vs. NCBI nr
Match: gi|449469028|ref|XP_004152223.1| (PREDICTED: protein trichome birefringence-like 6 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 60/72 (83.33%), Postives = 61/72 (84.72%), Query Frame = 1 

Query: 21  FREEFSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGIPVSGEARRENDMEEGKN 80
           F   FSRTD VTTHFVDAHLRKSEN STH KKP DNVTGYGGIPVSGE RRENDMEEG+N
Sbjct: 72  FGRNFSRTDAVTTHFVDAHLRKSENLSTHLKKP-DNVTGYGGIPVSGEERRENDMEEGRN 131

Query: 81  DSDTDGNTTEVR 93
           D   DGNTTEVR
Sbjct: 132 DGGADGNTTEVR 142

[Close]
BLAST of CSPI04G21070.1 vs. NCBI nr
Match: gi|659108997|ref|XP_008454494.1| (PREDICTED: protein trichome birefringence-like 6 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-22
Identity = 59/68 (86.76%), Postives = 60/68 (88.24%), Query Frame = 1 

Query: 25  FSRTDVVTTHFVDAHLRKSENHSTHWKKPADNVTGYGGIPVSGEARRENDMEEGKNDSDT 84
           FSRTD VTTHFVDAHLRKSEN STH KK ADNVTGYGGIPVSGE RREND+EEGKND   
Sbjct: 70  FSRTDAVTTHFVDAHLRKSENLSTHLKK-ADNVTGYGGIPVSGEERRENDVEEGKNDGGA 129

Query: 85  DGNTTEVR 93
           DGNTTEVR
Sbjct: 130 DGNTTEVR 136

The following BLAST results are available for this feature:
BLAST of CSPI04G21070.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G21070.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYW5_CUCSA5.7e-3996.39Uncharacterized protein OS=Cucumis sativus GN=Csa_4G572300 PE=4 SV=1[more]
A0A0A0KTA4_CUCSA1.2e-2383.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G003690 PE=4 SV=1[more]
BLAST of CSPI04G21070.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G21070.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199727|gb|KGN54885.1|8.2e-3996.39hypothetical protein Csa_4G572300 [Cucumis sativus][more]
gi|449469028|ref|XP_004152223.1|1.7e-2383.33PREDICTED: protein trichome birefringence-like 6 [Cucumis sativus][more]
gi|659108997|ref|XP_008454494.1|1.1e-2286.76PREDICTED: protein trichome birefringence-like 6 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G21070CSPI04G21070gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G21070.1CSPI04G21070.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G21070.1.utr3p1CSPI04G21070.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G21070.1.cds2CSPI04G21070.1.cds2CDS
CSPI04G21070.1.cds1CSPI04G21070.1.cds1CDS