CSPI04G18750.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G18750.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCACTA en-spm transposon protein
LocationChr4 : 16282039 .. 16282508 (+)
Sequence length378
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGGTTCGTAATAACTAGCATACTTAACACAATTTCTCTCAACGAATCATGTTGTTAAGTTATGCTTATTGTATCTAATAAACAATCGTTTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA

mRNA sequence

ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA

Coding sequence (CDS)

ATGTCTGCAGAAATAATGCAATCTAACTTTCCGAGTAATACGCATGAGGAAGACTATTTCCTTTATCTAGACGCGTTGGATAACGCATGTGGTTCGTCGTCAGTAGACGACACTTCAGTAAATCCCTCTCATCCGGCACCCACTCCCACTGTGAGGAGAGTACGACGATATTCTCGAAACATAGATGTCGAGCGATACGTACAGCAGAATGAGAGCATTCCCATTTCCATCCTCCCTAAAGGGGATAGACCTGTCTTAGCACAAGCCCCTCGTTTCAGTTGCATGATCGGTGTGTTGACACAAGACAAGTTTCCTATTCAACCTCTGAAGTGGGCAGATGTACCACTAGAGTGCATCAAGGTCGTCAAGGAGGCCTAA
Homology
[Close]
BLAST of CSPI04G18750.1 vs. TrEMBL
Match: E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1 

Query: 17  EDYFL-YLDALDN-ACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERYVQQNESIP 76
           +D FL + D LDN A GSSSV D + + S  A TPT RR R  SR +++ER+V  N  IP
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQA-TPTPRR-RAQSRLLELERHVAINGCIP 63

Query: 77  ISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVK 124
           ++I P  ++P+   A  FS  IGV  +  FP++ LKW DV  E I+VVK
Sbjct: 64  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVK 110

[Close]
BLAST of CSPI04G18750.1 vs. NCBI nr
Match: gi|778665376|ref|XP_011648549.1| (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 6.1e-21
Identity = 62/116 (53.45%), Postives = 79/116 (68.10%), Query Frame = 1 

Query: 9   NFPSNTHEEDYFLYLDALDNACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERYVQ 68
           +FPS   E D +L LD LDNA G S V +TS + S    T T+RR R++SRN+++ERY+ 
Sbjct: 687 SFPSGIREGDVYLNLDTLDNAEGLSLVGETS-DASQFTLTATLRR-RQHSRNLELERYIL 746

Query: 69  QNESIPISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVKE 125
           QN  I ISI  +GD+P+     RFSC I VLT+D FPIQ LKW DVP E I+VVK+
Sbjct: 747 QNGKILISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVKQ 800

[Close]
BLAST of CSPI04G18750.1 vs. NCBI nr
Match: gi|307136235|gb|ADN34071.1| (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 51/109 (46.79%), Postives = 68/109 (62.39%), Query Frame = 1 

Query: 17  EDYFL-YLDALDN-ACGSSSVDDTSVNPSHPAPTPTVRRVRRYSRNIDVERYVQQNESIP 76
           +D FL + D LDN A GSSSV D + + S  A TPT RR R  SR +++ER+V  N  IP
Sbjct: 4   DDMFLQFEDDLDNIAGGSSSVGDNTESSSQQA-TPTPRR-RAQSRLLELERHVAINGCIP 63

Query: 77  ISILPKGDRPVLAQAPRFSCMIGVLTQDKFPIQPLKWADVPLECIKVVK 124
           ++I P  ++P+   A  FS  IGV  +  FP++ LKW DV  E I+VVK
Sbjct: 64  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVK 110

[Close]
BLAST of CSPI04G18750.1 vs. NCBI nr
Match: gi|659093680|ref|XP_008447658.1| (PREDICTED: uncharacterized protein LOC103490067 [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 42  PSH---PAPTPTVRRVRRYSRNIDVERYVQQNESIPISILPKGDRPVLAQAPRFSCMIGV 101
           PSH       PT R+ R +SRN+++E+Y+ ++  IPISI    ++ + +    FS  I V
Sbjct: 53  PSHGILDGSGPT-RKTRDHSRNMELEKYICKHGKIPISITLGAEKSISSHVVLFSNTISV 112

Query: 102 LTQDKFPIQPLKWADVPLECIKVVKE 125
             +D FPI  L++ADVP + IK+VK+
Sbjct: 113 AIRDAFPIWLLRFADVPSKYIKIVKK 137

The following BLAST results are available for this feature:
BLAST of CSPI04G18750.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G18750.1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC72_CUCME1.1e-1146.79CACTA en-spm transposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of CSPI04G18750.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G18750.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778665376|ref|XP_011648549.1|6.1e-2153.45PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus][more]
gi|307136235|gb|ADN34071.1|1.5e-1146.79CACTA en-spm transposon protein [Cucumis melo subsp. melo][more]
gi|659093680|ref|XP_008447658.1|3.3e-0639.53PREDICTED: uncharacterized protein LOC103490067 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G18750CSPI04G18750gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G18750.1CSPI04G18750.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G18750.1.cds1CSPI04G18750.1.cds1CDS
CSPI04G18750.1.cds2CSPI04G18750.1.cds2CDS