CSPI04G15110.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G15110.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 12593344 .. 12594095 (-)
Sequence length297
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGGTGGTGGTCGTGGCGGTGGGGAGTGCTACAATTGTGGCCGGATGGGTCATTTGGCGAGGGATTGTTACAGGGGTAATGGCGGTGCTCCTTCCGGCCGTAGATACGACGGTGGGGGAGGAGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG

mRNA sequence

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG

Coding sequence (CDS)

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGAGGCGGAGGCGGAGGTGGGGGAGGTGGCGGAGGG
Homology
[Close]
BLAST of CSPI04G15110.1 vs. TrEMBL
Match: A0A0A0L128_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-21
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
           MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61  GGGYDGGGGGYDGGGGSDGGGGGGGGGGGGGGGGGGGGG 100
           GGGYDGGGGGYDGGGGS GGGGGGG GGGGGGGGGGGGG
Sbjct: 61  GGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGGGG 99

[Close]
BLAST of CSPI04G15110.1 vs. NCBI nr
Match: gi|700199139|gb|KGN54297.1| (hypothetical protein Csa_4G297470 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 8.2e-21
Identity = 97/99 (97.98%), Postives = 97/99 (97.98%), Query Frame = 1 

Query: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
           MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1   MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61  GGGYDGGGGGYDGGGGSDGGGGGGGGGGGGGGGGGGGGG 100
           GGGYDGGGGGYDGGGGS GGGGGGG GGGGGGGGGGGGG
Sbjct: 61  GGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGGGG 99

[Close]
BLAST of CSPI04G15110.1 vs. NCBI nr
Match: gi|778697672|ref|XP_011654372.1| (PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.3e-12
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 1 

Query: 20  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSDG 79
           FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGS G
Sbjct: 88  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGG 147

Query: 80  GGGGGGGGGGGGGGGGGGGG 100
           GGGGGG GGGGGGGGGGGGG
Sbjct: 148 GGGGGGDGGGGGGGGGGGGG 167

The following BLAST results are available for this feature:
BLAST of CSPI04G15110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G15110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L128_CUCSA5.7e-2197.98Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297470 PE=4 SV=1[more]
BLAST of CSPI04G15110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G15110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199139|gb|KGN54297.1|8.2e-2197.98hypothetical protein Csa_4G297470 [Cucumis sativus][more]
gi|778697672|ref|XP_011654372.1|5.3e-1297.50PREDICTED: glycine-rich protein DOT1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G15110CSPI04G15110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G15110.1CSPI04G15110.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G15110.mrna.cds.2CSPI04G15110.mrna.cds.2CDS
CSPI04G15110.mrna.cds.1CSPI04G15110.mrna.cds.1CDS