CSPI04G15050.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI04G15050.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 12559866 .. 12560762 (-)
Sequence length438
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGATGACAAATGGTTTTGAAATTTCTCAAGTATTATATATATATATTGCCTCTCTGATCATATATGTTGTTACAAAACTCTCAACCTCTAAAGGACCCTAACCCTTGCCATATTCATATTTTTGTTATTTGGCATGCACAGTCCAAACATGAATAGTACATACCGTTATCACAGCGATGAATATATTTATCCTCATAAAAGATCATATCCTAAGTACAAAGCACCAGTTTCTCGTCCTCATCGTGCTCGACACACTAGCTATCATGAATATGAGGATTATTATCCTCATCGGTCTCCTCATAATTATCAAGGCCGATACCCCAAGTATGATGCACCACCAACAAGAGCTCCTCCTCCTGATCATCAATGTAGCTATCATGAATATGAGGACTATTATCCTTATCAATCTAGTTTGTATGAAGGATACCCCATGTATGATGCGCCAACAACAAAAGCTCCTCCTCCTCCTCAATCCAAGGGTAAGAAAAACTGTAGGGCTTTGACATCCATGGCTTCATCTGTTGCTGGAAGTATTGGTGCTTCTTTCATCTCTAGCCTTTTGTTTAATTAGCTCAATAAAGATCTTTTTCTCTTTTTAGATAAATCTAGCGTTTTTTTTTCCATAATGAGGGGTCAGGAGGTATTAACGGAATATCTCGGTTAGAGTATTGTTTTTGAAGTGTGTAATATATATCTGTATTTGTGGTTGAAGAGCCCAAATATCTTGGGCATTATGAAGGGCTGCTTAGGGCTATGCTGCCCCTTACAACGTTCCGCTTAAAGATTGTAAAGTCAATGTTTGCTCAATTGCTCTCTGTCCATGGATTGACCGTTGTGGTGAAATGTCAAGTGTGTTATATATTTTTAAGTTCTGTGTTCTTCTTTATTTGACTTCCG

mRNA sequence

ATGCACAGTCCAAACATGAATAGTACATACCGTTATCACAGCGATGAATATATTTATCCTCATAAAAGATCATATCCTAAGTACAAAGCACCAGTTTCTCGTCCTCATCGTGCTCGACACACTAGCTATCATGAATATGAGGATTATTATCCTCATCGGTCTCCTCATAATTATCAAGGCCGATACCCCAAGTATGATGCACCACCAACAAGAGCTCCTCCTCCTGATCATCAATGTAGCTATCATGAATATGAGGACTATTATCCTTATCAATCTAGTTTGTATGAAGGATACCCCATGTATGATGCGCCAACAACAAAAGCTCCTCCTCCTCCTCAATCCAAGGGTAAGAAAAACTGTAGGGCTTTGACATCCATGGCTTCATCTGTTGCTGGAAGTATTGGTGCTTCTTTCATCTCTAGCCTTTTGTTTAATTAG

Coding sequence (CDS)

ATGCACAGTCCAAACATGAATAGTACATACCGTTATCACAGCGATGAATATATTTATCCTCATAAAAGATCATATCCTAAGTACAAAGCACCAGTTTCTCGTCCTCATCGTGCTCGACACACTAGCTATCATGAATATGAGGATTATTATCCTCATCGGTCTCCTCATAATTATCAAGGCCGATACCCCAAGTATGATGCACCACCAACAAGAGCTCCTCCTCCTGATCATCAATGTAGCTATCATGAATATGAGGACTATTATCCTTATCAATCTAGTTTGTATGAAGGATACCCCATGTATGATGCGCCAACAACAAAAGCTCCTCCTCCTCCTCAATCCAAGGGTAAGAAAAACTGTAGGGCTTTGACATCCATGGCTTCATCTGTTGCTGGAAGTATTGGTGCTTCTTTCATCTCTAGCCTTTTGTTTAATTAG
Homology
[Close]
BLAST of CSPI04G15050.1 vs. TrEMBL
Match: A0A0A0KXB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297410 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-76
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 1   MHSPNMNSTYRYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPHNYQG 60
           MHSPNMNSTY YHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSP NYQG
Sbjct: 1   MHSPNMNSTYGYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPCNYQG 60

Query: 61  RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC 120
           RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC
Sbjct: 61  RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC 120

Query: 121 RALTSMASSVAGSIGASFISSLLFN 146
           RALTSMASSVAGSIGASFISSLLFN
Sbjct: 121 RALTSMASSVAGSIGASFISSLLFN 145

[Close]
BLAST of CSPI04G15050.1 vs. NCBI nr
Match: gi|700199132|gb|KGN54290.1| (hypothetical protein Csa_4G297410 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 1 

Query: 1   MHSPNMNSTYRYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPHNYQG 60
           MHSPNMNSTY YHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSP NYQG
Sbjct: 1   MHSPNMNSTYGYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPCNYQG 60

Query: 61  RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC 120
           RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC
Sbjct: 61  RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNC 120

Query: 121 RALTSMASSVAGSIGASFISSLLFN 146
           RALTSMASSVAGSIGASFISSLLFN
Sbjct: 121 RALTSMASSVAGSIGASFISSLLFN 145

[Close]
BLAST of CSPI04G15050.1 vs. NCBI nr
Match: gi|659069470|ref|XP_008450016.1| (PREDICTED: phospholipase D beta 1-like [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 4.7e-41
Identity = 100/140 (71.43%), Postives = 108/140 (77.14%), Query Frame = 1 

Query: 6   MNSTYRYHSDEYIYPHKRSYPKYKAPVSRPHRARHTSYHEYEDYYPHRSPHNYQGRYPKY 65
           MN+ Y Y+S  Y YPHKRSYPKYKA V     A +TSYHEYEDYYP+ S  NYQG YPKY
Sbjct: 1   MNNPYGYYSHGYPYPHKRSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPS-RNYQG-YPKY 60

Query: 66  DAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAPTTKAPPPPQSKGKKNCRALTS 125
           DAP T+APPP HQCSYHEYEDYYPY S  Y+GYP YDAPTTKAPP  Q + KK   +LTS
Sbjct: 61  DAPTTKAPPP-HQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKE-GSLTS 120

Query: 126 MASSVAGSIGASFISSLLFN 146
           M SSVAGSIGASFIS L FN
Sbjct: 121 MLSSVAGSIGASFISCLFFN 136

The following BLAST results are available for this feature:
BLAST of CSPI04G15050.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G15050.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXB0_CUCSA1.1e-7698.62Uncharacterized protein OS=Cucumis sativus GN=Csa_4G297410 PE=4 SV=1[more]
BLAST of CSPI04G15050.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G15050.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199132|gb|KGN54290.1|1.6e-7698.62hypothetical protein Csa_4G297410 [Cucumis sativus][more]
gi|659069470|ref|XP_008450016.1|4.7e-4171.43PREDICTED: phospholipase D beta 1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI04G15050CSPI04G15050gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI04G15050.1CSPI04G15050.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G15050.1.utr3p1CSPI04G15050.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G15050.1.cds1CSPI04G15050.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI04G15050.1.utr5p1CSPI04G15050.1.utr5p1five_prime_UTR