CSPI04G02090.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G02090.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr4 : 1200617 .. 1203160 (+)
Sequence length	357

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGTGCACCAATCTATGGAAAAATTGGGTGTTTGTAATTTGTGAAGTGAGAAACTATCAAACAAAACAGCAAAGCGTTGGACCAAAAAAGTGGGAGCGGGAATGGAGGAAGACGATGATCCATGGTTAGCTCCCGATAAGTTCTACCATTTCCTTCTCTGTTTCTCTCTCACGATCCTCTTCGCTTCATTCGCCCTTCACACCCGCTATCCATTCATCCGTCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTTGCCGGAGCCGCCAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCCTCCACCAGGGATGCTGTTGCCGACTTTATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCTCTCAGATTCTCGATCCGCAGCGGCGGCGGCGGCGGCGGCAAAGAAGCTTGCCCTAATCGGGACATTTTAATGGTCTGAAATGATATGGGAGGGTTTTCTTTTCTGCTACTGATGGAGGAATGAGTCGACGTTTTACTTTGATCAAAGGTATTCGTTTGAGGTGAATTTTAACGTGGTTTCGTTTTCTTTATTCTGATGAGAATGTTTTATATTTGGGTTGCGGACTTCATTTCCTGAGATTCTCTAGCATCATTCTTCATTGGATTGGTTTCAGCTTGCTTGTTTTCATTGGAATTGTTGAAGAGATGTTCAATTTCATTACGGTGTCATTAATATTTTTAGTTAGAGAGTGTAAATTAAGAAAGGAGGAGTAGATCACTTCTTATTGTAGTACATTTTGTATCTATGCAGATTTAAGTGCTGAGTTTACGATGTGCTTAATAGATTTTGTTAGGTGATTGGAATATAGCATCAAAGGATCTTCAAGGTTTATCTAATTTTTCCTTCCAAATTTGAGTAATAATGATATCACCAGGCTCTTTATAACATCCTTTAAGATTTTTTTCCTTGTTTTTGACAATTAGATGTTGTAGGGTCAGATTAGTGATCACCCTTTCTTCGACCTGTGTCAACGTGCTTGCTTATCTGTGTTAATATGCTTGCTTTTGTGTTGACGTCCTTCCTCTACTGCATGTTGATGTGCTTGCTTTAGTCATGTTGACGTACCTGCTGCACCAATTTTGCTGTGTCAAATGACCTACGTTCCCTAAAAGCTCATTGTATAGAGAAATAGCTATAATCTCACTAGATAATCTTTTTGTTGAATTTTGGAAATTGTGCTGGTTTCCTCACAATTCTTTTTCTAAATGGTTTTCATCTTTCTTGAGGAAACATTTATATTCGTAGCCTCTTTCATCCGCCTTTTAGGGAGAAAGGTCTCTTCTTGTGGTTAGGCGTGTTAACTTTATTGTGGGATCTCTAGGGAAATATTAATAGGGTTTTTAGAGGAGTTGATAGGGACTCTAGTGATGTTTGATCCCTGGGGACGTTTTATATTTCTCATTAATTTTCGATTTCAAAGACTAATTAATCCATAGGTGAGGTTGAACGTGGTTGGTTATTTTTTTTTTTTTTAAAAAGGTCTTTTAAGTACAACTTGGGGTAGGGGGATTTGAACTCGGAATCTCTTGTTCTCAAGAAAGATACTGAGAGCTCATGTTGACAATTTGGTTATCTTTTCTCTAGGGTTTTTTTGCGGGGCTTGTTCTTTTTTTGTATCCCTTTGTGTTTTCTTTTCAATATTTCTATAAATGAAGAAAAATAAATATTGTCATAGCCAAATTCTAAAAACAAATTTAAAAGACTGTTGTTTGTAGTTCTTAAAATTTGGGTTATGACTTGGAAACATTCATAAAAAGGATTTCAAAAAACTAGAAATCAAATGGTTAGGGAGATAGGCCATGGTTTTCTAGTTACTACCTGAATTGAGTTTACAATTCAACTGCTATAGTTTCATTTCTAGATTACAAAGACAATTATTAGGCAGTTTCTTTTCCTTTTGGTTAAGAACTGGAAATCCTTTGGTTAACTATCATACACACAATGACCAATACTTGCAGCCTATCCATACACATTGTTCTGTTGCGTATTTACTACTGATACTGAACATACATTTGGTTTCATTTTTCCATCTCATCCATCGTTCTGATTTAGAATTTGTCTCAAGGATCTAAGGTTCAACATGTTCTCTGGGTTAATTAGGTAGGTAGGTTGGGGGATCGATCAGTTGTCATCGTCGAAAGCTTGCTGCAGTAGAAGGCAAGCGTGAATCACCATCTTTGTCAGGCAACTTAACTGCAGTGTAGATTCCAGCTCCACACAATGTCCCTAATATGGGAGCTGTGAGGTAAATCCATATGGCTTTGAAATTGTTTACTGCAATGGCTGGCCCCAGTGTTCTTACTGGATTCATTGAAGCTCCAGTTGTTTGTCTGTTACATAATTAAAATGAAAAGCTTTTTAGTTTGTTTGTTGTTTAATGGAGGTATATAGGGTAACATTTGTTCATAAGATAAGGCTCTAAATTACGGTTTCCTTTCTGAAACAGTAGCCACTTTGTTCACGTCTACATTTTGAAGAGAAATCTATTACTATGAGTTGG

mRNA sequence

ATGGAGGAAGACGATGATCCATGGTTAGCTCCCGATAAGTTCTACCATTTCCTTCTCTGTTTCTCTCTCACGATCCTCTTCGCTTCATTCGCCCTTCACACCCGCTATCCATTCATCCGTCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTTGCCGGAGCCGCCAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCCTCCACCAGGGATGCTGTTGCCGACTTTATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCTCTCAGATTCTCGATCCGCAGCGGCGGCGGCGGCGGCGGCAAAGAAGCTTGCCCTAATCGGGACATTTTAATGGTCTGA

Coding sequence (CDS)

ATGGAGGAAGACGATGATCCATGGTTAGCTCCCGATAAGTTCTACCATTTCCTTCTCTGTTTCTCTCTCACGATCCTCTTCGCTTCATTCGCCCTTCACACCCGCTATCCATTCATCCGTCGCCACTCCATTCTCATCGGATCCGTCCTTTCTCTTTTTGCCGGAGCCGCCAAAGAGGTCGCCGACGAACTCGGCTTCTTCAAGTCCGCCGGAGCCTCCACCAGGGATGCTGTTGCCGACTTTATCGGCGTCTTGATCGCTTCTTTCCTTCTTCACGCTCTCAGATTCTCGATCCGCAGCGGCGGCGGCGGCGGCGGCAAAGAAGCTTGCCCTAATCGGGACATTTTAATGGTCTGA

Homology

[Close]

BLAST of CSPI04G02090.1 vs. TrEMBL
Match: A0A0A0KYM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007020 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.4e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV
Sbjct: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 119
           ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV
Sbjct: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 118

[Close]

BLAST of CSPI04G02090.1 vs. TrEMBL
Match: U5GVQ6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14840g PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.4e-27
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 1


Query: 2   EEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVA 61
           + ++DPWLAPDK YH L C SLT+LF+  A  TRYPF++RHSI +G++LSLFAGAAKE A
Sbjct: 26  DNNEDPWLAPDKLYHVLFCLSLTLLFSKLASLTRYPFLKRHSIRVGAILSLFAGAAKEAA 85

Query: 62  DELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGG 106
           D++G F SAGAS +DAVAD IGVLIA+  L  L+     G   G
Sbjct: 86  DQIGLFPSAGASAKDAVADIIGVLIAAAALSMLKSKNYDGSDSG 129

[Close]

BLAST of CSPI04G02090.1 vs. TrEMBL
Match: A0A061GA39_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027411 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.4e-27
Identity = 62/104 (59.62%), Postives = 78/104 (75.00%), Query Frame = 1


Query: 2   EEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVA 61
           ++D DPWLAPDK YHFL CF LT LF++ A  +RY F+R HSI +GS+LSL AGAAKE A
Sbjct: 11  DDDKDPWLAPDKLYHFLFCFFLTFLFSTLASLSRYSFLRNHSIRVGSILSLAAGAAKEAA 70

Query: 62  DELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGG 106
           D+LG F SAGAS+RDAVAD +GVL+A+ +L   +  +R G   G
Sbjct: 71  DQLGLFPSAGASSRDAVADLLGVLVAAMVLSLRKRLLRFGSDSG 114

[Close]

BLAST of CSPI04G02090.1 vs. TrEMBL
Match: A0A072VDU9_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g104930 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26
Identity = 58/94 (61.70%), Postives = 75/94 (79.79%), Query Frame = 1


Query: 2  EEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVA 61
          +ED DPWL  DKFYH ++CF+LT+LF + A  T +PF+RRH+I IGSV+SL AGAAKE A
Sbjct: 5  DEDTDPWLGADKFYHIIMCFTLTLLFYALASFTSHPFLRRHAISIGSVVSLLAGAAKEAA 64

Query: 62 DELGFFKSAGASTRDAVADFIGVLIASFLLHALR 96
          D LG+F+S+GAS +DA+AD +GV+IASF L   R
Sbjct: 65 DHLGYFRSSGASFKDAIADIVGVVIASFALTLFR 98

[Close]

BLAST of CSPI04G02090.1 vs. TrEMBL
Match: V4KV63_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009838mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-25
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 1


Query: 5   DDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVADEL 64
           +DPWLAPDK YH + CFS+++LF++ A  +RY F+RRHSILIGS  SL AGAAKE AD  
Sbjct: 10  EDPWLAPDKLYHVIFCFSISLLFSTLASLSRYSFLRRHSILIGSAFSLAAGAAKEAADHF 69

Query: 65  GFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRS 101
           G F SAGAS RDAVAD +GV+IA+FLL   R S RS
Sbjct: 70  GVFPSAGASARDAVADAVGVVIAAFLLFIWRKSRRS 105

[Close]

BLAST of CSPI04G02090.1 vs. TAIR10
Match: AT1G15900.1 (AT1G15900.1 unknown protein)

HSP 1 Score: 114.0 bits (284), Expect = 6.3e-26
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 3  EDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVAD 62
          + +DPWLA DK YH + CFS++++F++ A  +RY F+RRHSI IGS  SL AGAAKE AD
Sbjct: 9  DGEDPWLARDKLYHVIFCFSISLIFSTLASFSRYSFLRRHSIWIGSAFSLAAGAAKEAAD 68

Query: 63 ELGFFKSAGASTRDAVADFIGVLIASFLL 92
          ++G F SAGAS RDAVAD IGV+IA+ +L
Sbjct: 69 QIGIFPSAGASVRDAVADAIGVVIAALVL 97

[Close]

BLAST of CSPI04G02090.1 vs. NCBI nr
Match: gi|778689694|ref|XP_011653000.1| (PREDICTED: uncharacterized protein LOC105435165 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 4.8e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV
Sbjct: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60

Query: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 119
           ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV
Sbjct: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 118

[Close]

BLAST of CSPI04G02090.1 vs. NCBI nr
Match: gi|659108374|ref|XP_008454165.1| (PREDICTED: uncharacterized protein LOC103494650 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 4.4e-53
Identity = 110/118 (93.22%), Postives = 111/118 (94.07%), Query Frame = 1


Query: 1   MEEDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEV 60
           MEEDDDPWLAPDK YHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSL AGAAKEV
Sbjct: 45  MEEDDDPWLAPDKLYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLCAGAAKEV 104

Query: 61  ADELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGGGKEACPNRDILMV 119
           ADELGFFKSAGASTRDAVAD IGVL+ASFLLHALRFSIRS   GG KEACPNRDILMV
Sbjct: 105 ADELGFFKSAGASTRDAVADLIGVLLASFLLHALRFSIRS--SGGDKEACPNRDILMV 160

[Close]

BLAST of CSPI04G02090.1 vs. NCBI nr
Match: gi|645245219|ref|XP_008228778.1| (PREDICTED: uncharacterized protein LOC103328163 [Prunus mume])

HSP 1 Score: 137.1 bits (344), Expect = 2.0e-29
Identity = 62/97 (63.92%), Postives = 80/97 (82.47%), Query Frame = 1


Query: 3   EDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVAD 62
           +D+DPWLAPDK +H L CFS T+LF++ A  TRYPF+RRHSI +GS+LSL AGAAKE AD
Sbjct: 2   DDNDPWLAPDKLHHVLFCFSFTLLFSTLAARTRYPFLRRHSIRVGSILSLLAGAAKEFAD 61

Query: 63  ELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIR 100
           ELGFF+SAGAS +DA AD +GVLI S +L+ ++++ R
Sbjct: 62  ELGFFRSAGASAKDAAADILGVLIGSIVLYLIKYTTR 98

[Close]

BLAST of CSPI04G02090.1 vs. NCBI nr
Match: gi|470134854|ref|XP_004303251.1| (PREDICTED: uncharacterized protein LOC101304109 [Fragaria vesca subsp. vesca])

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-29
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 1


Query: 3   EDDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVAD 62
           ED+D WLA DK YHFL CFSLT+ F++F   T YPF+RRHSI +GS+LSL AGAAKE AD
Sbjct: 2   EDNDSWLARDKLYHFLFCFSLTLFFSTFVARTPYPFLRRHSIRVGSLLSLLAGAAKEFAD 61

Query: 63  ELGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIRSGGGGG 106
           ELGFF SAGAS +DAVA+FIGV++AS LL  +R+  RS    G
Sbjct: 62  ELGFFHSAGASAKDAVANFIGVVVASLLLSLVRYLARSDNEAG 104

[Close]

BLAST of CSPI04G02090.1 vs. NCBI nr
Match: gi|658016667|ref|XP_008343682.1| (PREDICTED: uncharacterized protein LOC103406475 [Malus domestica])

HSP 1 Score: 135.6 bits (340), Expect = 5.8e-29
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 4   DDDPWLAPDKFYHFLLCFSLTILFASFALHTRYPFIRRHSILIGSVLSLFAGAAKEVADE 63
           D+DPWLAPDK  H L CFSLT++F++ A  TRYPF+RRHSI  GS+LSL AGA KE ADE
Sbjct: 3   DNDPWLAPDKLQHVLFCFSLTLIFSTLATRTRYPFLRRHSIWFGSILSLLAGAVKEFADE 62

Query: 64  LGFFKSAGASTRDAVADFIGVLIASFLLHALRFSIR 100
           LGFF+SAGAS +DAVADF+GVLI S +L+ +++  R
Sbjct: 63  LGFFRSAGASAKDAVADFVGVLIGSLVLYFVKYVTR 98

The following BLAST results are available for this feature:

BLAST of CSPI04G02090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G02090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYM1_CUCSA	3.4e-60	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G007020 PE=4 SV=1	[more]
U5GVQ6_POPTR	6.4e-27	59.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14840g PE=4 SV=1	[more]
A0A061GA39_THECC	8.4e-27	59.62	Uncharacterized protein OS=Theobroma cacao GN=TCM_027411 PE=4 SV=1	[more]
A0A072VDU9_MEDTR	4.2e-26	61.70	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_2g104930 PE=4 SV=1	[more]
V4KV63_EUTSA	1.2e-25	64.58	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009838mg PE=4 SV=1	[more]

BLAST of CSPI04G02090.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15900.1	6.3e-26	60.67	unknown protein	[more]

BLAST of CSPI04G02090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778689694\|ref\|XP_011653000.1\|	4.8e-60	100.00	PREDICTED: uncharacterized protein LOC105435165 [Cucumis sativus]	[more]
gi\|659108374\|ref\|XP_008454165.1\|	4.4e-53	93.22	PREDICTED: uncharacterized protein LOC103494650 [Cucumis melo]	[more]
gi\|645245219\|ref\|XP_008228778.1\|	2.0e-29	63.92	PREDICTED: uncharacterized protein LOC103328163 [Prunus mume]	[more]
gi\|470134854\|ref\|XP_004303251.1\|	2.6e-29	65.05	PREDICTED: uncharacterized protein LOC101304109 [Fragaria vesca subsp. vesca]	[more]
gi\|658016667\|ref\|XP_008343682.1\|	5.8e-29	65.63	PREDICTED: uncharacterized protein LOC103406475 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI04G02090	CSPI04G02090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI04G02090.1	CSPI04G02090.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G02090.1.utr5p1	CSPI04G02090.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G02090.1.cds1	CSPI04G02090.1.cds1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI04G02090.1.utr3p1	CSPI04G02090.1.utr3p1	three_prime_UTR
CSPI04G02090.1.utr3p2	CSPI04G02090.1.utr3p2	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35462	FAMILY NOT NAMED	coord: 2..95 score: 6.6
None	No IPR available	PANTHER	PTHR35462:SF2	SUBFAMILY NOT NAMED	coord: 2..95 score: 6.6