CSPI04G01400.2 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTCTAAATCACATGGCCACGAACTTACAATCAGATATGAACAAGTACGCACGACCGTACCGGACAGAAGCTGAGCCTTGCGATCCGGTGCACCAGGTTGTTCGAAACACCGGCCAGTGAGTCTCGCTTGAGAGTTGAAATTAAAGCTTGAAGATCCTTCCGAATCTCTCTTTTTTGCCTTCTTTCATTCTTTACACAGAGAATCGAAGTTTCCAATATTCACAAAGAAACCGGTGATCCAAAGATGTCTCTGACGGCCGTGAAGATGTCTGAAGATGTCTGGTTTACTTGTCTCACTCATGCATTATCCACCGAGACTGAAGAAATCATGGGCCTTCTCCTTGGCGATATTGAGGTCACTCTCTTTATTTCCACTCTGCAATTTACTTCCCTTTCTTTCAAGGGTTTCTTTGAGTTTTGCTTTAATTTTGATTACTGGGTGTCTGTTTCTTCGCTTCGTTGTTTCTTGTGTTGGATTTTATTTGAAATGAAGGTTAGATTGGTTGTTTTGGCAAATGGGGTTGTTTGCAGTTTTAATTCTCTTTACTTTAGAGTTAGAGGTAAAGTTCTTGTGCTGTTCTAGCTCAGTTAATTGATTTCTTAGCCATTTCGTAAAGATCAGAGTGAAGAGTGGTATTTGTGGTGCTTCCAGTTAATGGGTCTTCTGATTCCAAATGGTGCTGTTGAAAGCAGACTTGGTTTGTCTTTCACATTAGTGCGTGCGAATATGTTCTAGCTCTTATTCGATGGTCTATCTGAATTTTGATTCTATAGTTTCTTTCTAGAGTTTGAGTAATTTCTATTTCATGGTTGATTCTCTAAGCTTTAAGCTATTTTCATGCCTTTTCTTTCAGGGTGCTATATTTTCCTTTTTAAAAGGTAGTTGTTATTTGGGTTCTGCATTCTTCCTGACCATGAGATTTTGCAGCATTCGAAAAATGGTAGTGTAACTGCACTAATTTGGGGGGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCAGCCCAGGCCGAGATATCCTTTGTTCCTTTTAGCTTTAGGAAATTCCTCATCTTCTAGACATGGTCCTATTTATCTTAGCTAATGCCTTATATCAATACTTCCTTTCGAGTGCATCTTTTTTATTATCATTTAAATCCATTATTGTCTTGATAAATGAAAAGACCTTTCTCAGTTTATGTTAAAACATTCGTTCATAGATTGTCTATTGCGCAATATTTTGACTCTACAATTTCATTTACACTAGGACCCCCTAGGGGAGCAACACCATTTGCTTGGGCTGCCTCCTCTAAGTAACACCTAGCCAGAGGTCGCTTGCTCAGATTTTTGGGTGAGCTTAATAAAGAACACCCTCAATGTCTCCAGAGTCTAGGCCTTCGGATGTCCACAAACTCTTTTTTTTAACATAAAAACCATACTTTGATGAAGAAAGTTTTTCATGGTATGTGTTTAAATGATTGGGTTGGGGATCTAGCAAAGTGGACCATTTTCCTTGTTTAATATATAATTGTATTGGGTATAACGTATAAGAGGAAAAAAAATGAAATGGGATTGCAATGTGCCAGGAGTCTGCCTAGTTAAATTTTATGAGTGGTGAGAATTTTCATTATGTTTTCTACCTTCAAGAGTCAAACGTTGAAACTGATTTTTAATACCAGTGTGGCTTTGTAAAGTAGTTTAACATAAGTAGGTTAACTATTCAAATTCTGAAGTTATTTTGCTTTTATTCAATATTGTTATATTCTTAATTTTATAGAACAGAATGACAGCAATGACTGGTAGAACAACTAGAGTTATTGGGTGGTACCATTCACATCCTCATATTACAGTGCTTCCTTCACATGTTGGTTAGTATTGACTTGTCCATGATGTTTAATTGTAACCCATCTTGTTCGTGAGCTGTAATAACAGCAATGGTGTAAAAGGTTTTGCATGTCGATTAATTGGTTTTCCATCTTGCTCTGGATTCCTATGTCTCATCTGGGGACCAAGTTTCCATTCCATTCCACCCAAACTAGCATATTGTTTCATCCTTCAAGTGATTATGTCTTATTGGTGATAAATGATTAGAGACCAACTCTCCTTTAGCTTCTGTATGCTCCTAGCCTCTTCCTCTTCCATTTTTCAATTAAAGACATTTCTTCTTCTTCTTTCTTTCTATTATTCTTTTTTTTTTTTTCCTTTTTTGAAGGAAAAAACTTCAGATTAGGCTTTCTTTCGGTGCTAGGATGCTTAGAATAGAAAGCTGAAACTTTTCTCTTTCCTCGTTTGTTCTGATGATTGTATTACAATAGTTACAAAACTAGACCTGAAAATTTCATCATTGGTGACATTTCATCAGTGCAGTTTCTCTTTCCTCTTCGTATTCATTGTGAAAGTTAATAATTCAAAAGAGCTTACAAATATTTCTATGTTATATAAGAAAATAATTAGTATTTCATATAAAAGTTTGAAATCTTTTACATTATTTATCTTTGTTACAATTTTGGCTAAAGGAGTCTCCTTGATTTATTTATTAGAGGATGCTATTTTTTCTTTTGCACCTCTCTATCAAAGACAATAACTTTCCATTCATGGAAATCTTACTTGCAGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGATTTATTGGGCTGATATTTTCTTGCTTTAGTGAAGATGCGAACAAGGTTCGAATAGTTGCTTGTTTTGCTTTGGAGAATTATCTTTGGCATTTTTGCTAAACTTTCGTAGTTGGGAAATGCCAGGTTGGAAGAATTCAAGTTATTGCTTTCCAATCCTCTGATGGGAAACAGAATCACTTGTCAAGACCTATTTCTTTATCTCCTGTATATCGAAATTCGGTGATTGATGTGGAATCTTCTTTAAGTTCCTCTGATAATGTATCAGGAAATGTGGGTTATGGACCAGGAGAGAATCCGGAACAAGACACTGGTGATTCAATGATTGCTGGAGCTCTTAAGGTACAAGTACAACATATCCTCATTACAAAGATGCCTAAATCTGGATGTTTGGATTCATATAGCCAGCTTATGTTGAATGATGAGCAGAAGGTTTTACCAAAGTGTCAATTTTCTGTCTCAGATGATGTTGAGCCTTGTTTGTTTATGGAGAAACAATTTGACTCTTGAGCTATTTTGAAATTTTTTTAACTAGGTACCTGATAAGTCTTGCCTCACTTTAAATTTGGAAAACTTATGCAGAAAACTAATAACTTACATCACTTTTGAATCTCATATTCGTCTACTCAAACAGGTGGGTAAAGCTGCATGTCCTAGAGTTTTAGATTCACTTCTGTAGACAAATCTCTTCTATCAATCTCACCATTCACTTTCATGCCGATTAGGAAACTAAATCTTGCAATTGTGTTTTGCTAAAACTTTTATTTCTCTCTCTTGGATTGCTAATGAAGTACTGTTGCAAATAATATAAGCCTATTCAAGTTCTGTGAATAAGATTTAACTCTTTTAAGATATTACAAGTAACGAAGCTTTCATTTATTATGCACCTTGTTTTATCTGGCAAACCTTGGTTCAAGGTTTGAACTTGAAATGGCCTATTAGTTTATCATCAATGAAAAAACTGGGATGATTTCATCATCTTAATGTAGCATATTTTTTAGCTTAATATTTCCATGCTACAACATGAAGTAATTGTCTGCTGGTTAATTGAAGTCACTCGGTTACTGTTTGTCTTCAAAGGAAACATCTAAAGAAGTGCTCCATGGATTTTATATAAAGTTTCAATTGTAGGAGTTCAATTTTTAAAATTTTGAAGTGCTGCGTATTGAACATTTCACCATGATTGGTGTGTATTGGCTTGTTTGACATTGTCTACAGGGTACTGGACGATCTTCAGAGTTGGGTTATTTTTTTGCTAATGCCGACACCAACTATCAAGGAAAAGAGAAAATTGGTGGAAGTTATCTTATTAATAATACAAATAGTGGGATTACTGATATCGATCCAATGGACTTGTCTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATTGAAATGAGGTACGTTCAAAGTGCTAATTTGTTGGTCTTGGCGTCTAATGTCATAAAGTTATCTAAATAATGAGTTATCTTGTAATGAGTTCAAATTGTGCTATCCATGAGTACTTGCTTGTTCGTGTAGCTGCATTGAGAGGGAGTCAGATATACCAGTTGCCTTTGTTATCTTGTTTTTCTTTCCTGAAGGATAATTCATCATCCTCATTTTTCTCTCTCTTGCTCCCAGTGCTGCTGAATTTTCAAGGAAAGAGATTCCTCTTCATGTTATGCCGACTGCATCGCTCATAAAGCTTGATTCACCATTGACATCTTTTACAGATTTACAGCATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTCGAATAACATGAAGTAAGTGGTTTTCTCTTTAATTAATATCTGGAGCATGTATTCCTAACTTACAAATGGTTCTGTCTTCTATTTTATAATTGACTGTAATGATCACTTTTGTTTTTGATAGGGATGGGAAAGTGCATCCGCTGACGTTCATACATCACACATCAACATATCAGGCTTCAATGTGCAAGTTAATTGAATATTGGTTAGGCTCACATGCTGTCCTCTATCGACCATTTATTTTTGGTCTTTTATTCTCTGTATGCCTTGAATACACAATTGACTGGGAGTTGTTCTTGTTTTTCCTTTCCTTGCATGTAGTCTTAGTCCTGCCATAAGTGCGCTTCAGGACCGCGTAAAAGAGAATGAAATTCGGGTAAGAATTGATACCATAAACACCCATTTGTGTAGACTCAAAGGGGATGTTTTCTGTGCATTAGTCTTTTGATCTCTATGCTCTGATGGATTCAAATCGTTGCTTCATTCGTAAGAGTGTCAGATAGTTCTAATATGATGCTGTTGGTTAATGACTTCTTTGTCCAACAGTTAGCTTTGCTGGCCGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGCAAAAGCAAATGAGTCAGTCCCAGGATCACCTCATCAAGTTACTCATGGATCTCGAGCAAGTGCTTCACCAACCCACAGGGACTTGTATCCTTCAACTGCCTCTGTTGGTGCACGTAGTGGAGGAAGCTCTATGTACCGGAGTAGGAAGGGGTTATGAATATGATATCTTTTCCCTTTGACTTGTTTTCCGAACTCCTGAACACCTGTATTATAGCGTTCAGGTTTTTTTGTGCATAAAAACGATCGAAAGTATAGAAGAGGGGTCAAATGGCATTCATTATTAGCTACCAAAATTTCCTCTTCTTGATGTTAGATACTTTAGTGTCTAAAAATGGCTTTTCACAAGTAGCAATGCTGTTGAATCCACTTATATCAGTCTGGATAAGTTGCCAATTAACAGCAGTCTTGAATCTCTATGCTTCTGGTGACCAAAATGATTTTTCATCACAAATGCAAGAATGCAAT ATGTCTCTGACGGCCGTGAAGATGTCTGAAGATGTCTGGTTTACTTGTCTCACTCATGCATTATCCACCGAGACTGAAGAAATCATGGGCCTTCTCCTTGGCGATATTGAGCATTCGAAAAATGGTAGTGTAACTGCACTAATTTGGGGGGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCAGCCCAGGCCGAGAGAATGACAGCAATGACTGGTAGAACAACTAGAGTTATTGGGTGGTACCATTCACATCCTCATATTACAGTGCTTCCTTCACATGTTGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGATTTATTGGGCTGATATTTTCTTGCTTTAGTGAAGATGCGAACAAGGTTGGAAGAATTCAAGTTATTGCTTTCCAATCCTCTGATGGGAAACAGAATCACTTGTCAAGACCTATTTCTTTATCTCCTGTATATCGAAATTCGGTGATTGATGTGGAATCTTCTTTAAGTTCCTCTGATAATGTATCAGGAAATGTGGGTTATGGACCAGGAGAGAATCCGGAACAAGACACTGGTGATTCAATGATTGCTGGAGCTCTTAAGGGTACTGGACGATCTTCAGAGTTGGGTTATTTTTTTGCTAATGCCGACACCAACTATCAAGGAAAAGAGAAAATTGGTGGAAGTTATCTTATTAATAATACAAATAGTGGGATTACTGATATCGATCCAATGGACTTGTCTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATTGAAATGAGTGCTGCTGAATTTTCAAGGAAAGAGATTCCTCTTCATGTTATGCCGACTGCATCGCTCATAAAGCTTGATTCACCATTGACATCTTTTACAGATTTACAGCATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTCGAATAACATGAAGGATGGGAAAGTGCATCCGCTGACGTTCATACATCACACATCAACATATCAGGCTTCAATGTGCAAGTTAATTGAATATTGTCTTAGTCCTGCCATAAGTGCGCTTCAGGACCGCGTAAAAGAGAATGAAATTCGGTTAGCTTTGCTGGCCGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGCAAAAGCAAATGAGTCAGTCCCAGGATCACCTCATCAAGTTACTCATGGATCTCGAGCAAGTGCTTCACCAACCCACAGGGACTTGTATCCTTCAACTGCCTCTGTTGGTGCACGTAGTGGAGGAAGCTCTATGTACCGGAGTAGGAAGGGGTTATGA ATGTCTCTGACGGCCGTGAAGATGTCTGAAGATGTCTGGTTTACTTGTCTCACTCATGCATTATCCACCGAGACTGAAGAAATCATGGGCCTTCTCCTTGGCGATATTGAGCATTCGAAAAATGGTAGTGTAACTGCACTAATTTGGGGGGCATCGCCTCAGACACGGTCTGACAGAAGGAAGGACCGTGTGGAGACTCATCCTGAACAATTGGCTGCTGCATCAGCCCAGGCCGAGAGAATGACAGCAATGACTGGTAGAACAACTAGAGTTATTGGGTGGTACCATTCACATCCTCATATTACAGTGCTTCCTTCACATGTTGATGTGCGAACTCAAGGGACATATCAGCTCCTTGATTCTGGATTTATTGGGCTGATATTTTCTTGCTTTAGTGAAGATGCGAACAAGGTTGGAAGAATTCAAGTTATTGCTTTCCAATCCTCTGATGGGAAACAGAATCACTTGTCAAGACCTATTTCTTTATCTCCTGTATATCGAAATTCGGTGATTGATGTGGAATCTTCTTTAAGTTCCTCTGATAATGTATCAGGAAATGTGGGTTATGGACCAGGAGAGAATCCGGAACAAGACACTGGTGATTCAATGATTGCTGGAGCTCTTAAGGGTACTGGACGATCTTCAGAGTTGGGTTATTTTTTTGCTAATGCCGACACCAACTATCAAGGAAAAGAGAAAATTGGTGGAAGTTATCTTATTAATAATACAAATAGTGGGATTACTGATATCGATCCAATGGACTTGTCTGAAAGTATGCAAGAAGCAATGCACCGTTCAAATATTGAAATGAGTGCTGCTGAATTTTCAAGGAAAGAGATTCCTCTTCATGTTATGCCGACTGCATCGCTCATAAAGCTTGATTCACCATTGACATCTTTTACAGATTTACAGCATGTTCTGTTTGAAGAGGAGAGATCAGCTTATAACCAAGCCATCTCGAATAACATGAAGGATGGGAAAGTGCATCCGCTGACGTTCATACATCACACATCAACATATCAGGCTTCAATGTGCAAGTTAATTGAATATTGTCTTAGTCCTGCCATAAGTGCGCTTCAGGACCGCGTAAAAGAGAATGAAATTCGGTTAGCTTTGCTGGCCGAGGAAGCCAGGAATCTGGAAGTTGAGGCTGCAAAAGCAAATGAGTCAGTCCCAGGATCACCTCATCAAGTTACTCATGGATCTCGAGCAAGTGCTTCACCAACCCACAGGGACTTGTATCCTTCAACTGCCTCTGTTGGTGCACGTAGTGGAGGAAGCTCTATGTACCGGAGTAGGAAGGGGTTATGA
BLAST of CSPI04G01400.2 vs. Swiss-Prot
Match: BRCC3_SALSA (Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 1.1e-40 Identity = 87/182 (47.80%), Postives = 122/182 (67.03%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. Swiss-Prot
Match: BRCC3_XENTR (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus tropicalis GN=brcc3 PE=2 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 5.4e-40 Identity = 83/155 (53.55%), Postives = 111/155 (71.61%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. Swiss-Prot
Match: BRCC3_XENLA (Lys-63-specific deubiquitinase BRCC36 OS=Xenopus laevis GN=brcc3 PE=2 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 9.2e-40 Identity = 83/155 (53.55%), Postives = 111/155 (71.61%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. Swiss-Prot
Match: BRCC3_PONAB (Lys-63-specific deubiquitinase BRCC36 OS=Pongo abelii GN=BRCC3 PE=2 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 2.0e-39 Identity = 93/206 (45.15%), Postives = 120/206 (58.25%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. Swiss-Prot
Match: BRCC3_MOUSE (Lys-63-specific deubiquitinase BRCC36 OS=Mus musculus GN=Brcc3 PE=1 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 5.9e-39 Identity = 89/201 (44.28%), Postives = 117/201 (58.21%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TrEMBL
Match: A0A0A0KWR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G004830 PE=4 SV=1) HSP 1 Score: 849.0 bits (2192), Expect = 2.6e-243 Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TrEMBL
Match: A0A151SXP9_CAJCA (Lys-63-specific deubiquitinase BRCC36 OS=Cajanus cajan GN=KK1_015028 PE=4 SV=1) HSP 1 Score: 617.8 bits (1592), Expect = 9.8e-174 Identity = 323/436 (74.08%), Postives = 368/436 (84.40%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TrEMBL
Match: A0A067ECR8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014126mg PE=4 SV=1) HSP 1 Score: 617.5 bits (1591), Expect = 1.3e-173 Identity = 325/438 (74.20%), Postives = 373/438 (85.16%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TrEMBL
Match: V4SII3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025661mg PE=4 SV=1) HSP 1 Score: 617.5 bits (1591), Expect = 1.3e-173 Identity = 325/438 (74.20%), Postives = 373/438 (85.16%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TrEMBL
Match: A0A0B2QS06_GLYSO (Lys-63-specific deubiquitinase BRCC36 OS=Glycine soja GN=glysoja_024976 PE=4 SV=1) HSP 1 Score: 614.4 bits (1583), Expect = 1.1e-172 Identity = 321/436 (73.62%), Postives = 369/436 (84.63%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TAIR10
Match: AT1G80210.1 (AT1G80210.1 Mov34/MPN/PAD-1 family protein) HSP 1 Score: 507.7 bits (1306), Expect = 7.2e-144 Identity = 268/404 (66.34%), Postives = 319/404 (78.96%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. TAIR10
Match: AT3G06820.2 (AT3G06820.2 Mov34/MPN/PAD-1 family protein) HSP 1 Score: 497.3 bits (1279), Expect = 9.8e-141 Identity = 269/404 (66.58%), Postives = 315/404 (77.97%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. NCBI nr
Match: gi|449469008|ref|XP_004152213.1| (PREDICTED: lys-63-specific deubiquitinase BRCC36 [Cucumis sativus]) HSP 1 Score: 849.0 bits (2192), Expect = 3.8e-243 Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. NCBI nr
Match: gi|659108552|ref|XP_008454260.1| (PREDICTED: COP9 signalosome complex subunit 5-like isoform X1 [Cucumis melo]) HSP 1 Score: 846.7 bits (2186), Expect = 1.9e-242 Identity = 435/436 (99.77%), Postives = 435/436 (99.77%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. NCBI nr
Match: gi|659108554|ref|XP_008454262.1| (PREDICTED: uncharacterized protein LOC103494717 isoform X2 [Cucumis melo]) HSP 1 Score: 693.3 bits (1788), Expect = 2.6e-196 Identity = 355/356 (99.72%), Postives = 355/356 (99.72%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. NCBI nr
Match: gi|225442853|ref|XP_002285369.1| (PREDICTED: uncharacterized protein LOC100253140 [Vitis vinifera]) HSP 1 Score: 627.5 bits (1617), Expect = 1.8e-176 Identity = 329/437 (75.29%), Postives = 370/437 (84.67%), Query Frame = 1
BLAST of CSPI04G01400.2 vs. NCBI nr
Match: gi|1012348401|gb|KYP59592.1| (Lys-63-specific deubiquitinase BRCC36 [Cajanus cajan]) HSP 1 Score: 617.8 bits (1592), Expect = 1.4e-173 Identity = 323/436 (74.08%), Postives = 368/436 (84.40%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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