CSPI03G45800.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G45800.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Hydroxyproline-rich glycoprotein
Location	Chr3 : 39200159 .. 39200903 (+)
Sequence length	384

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAATTGAAAGAAAACCCATTTAGAATAATAATAAATAGAAAGAGAAGAAAAGAGGGTTTAATTTAATATAAAGAAATTTGTGTGCATAAATAAAAATGGTTGGGAGTGGAAATGAAGAAAAGAAATTGAAATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGGTGCGTCCTTTTCTTCATTTCTTCATTATTTTAAATACCATAATCCAATTTGTTTTCTTATATATACGTTTAACTAATCTTTCCTTCTTCGTCTATTATTCTCTTAACAACCAGAAGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAATTATTCTCTGTAGCCTTCCCTCTTCAATTAATTAAATACTGCTTTTTTTTTTCTTCTTTTTAATTATAAGGTTTTTGTGCATATATATTATATTACAATATATAGATGTGC

mRNA sequence

ATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Coding sequence (CDS)

ATGAGAGATAGAGAAATGGAGTATGATAATCGCGAAGCACAGGATCCGGCCTCTCTAAGCTTTCCAGTTGGTTTAGTTCTTTTGTTAACGTTTTTGTTTTGTATGTGTTGTTTCTTTTGCTGTTGTCTTCACTGGGAGAAGCTCCGATCCTTTCTTGGCTGCCCCGATCATCTCCACCACCACCATCCTCCCATTCCCCAGCCCCAATCCCCCGCCCCCGATAAAGTTTCGCCTATTCACTCGATATGGAAGGAGAATCGGCCGCAAAGCGTATCCGTGTTGATGCCCGGCGACGAGGTTCCGAGGTTTATAGCAATGGCGTGTCCGGCGTTGGTGGAAATTGTAGTACAAAAACCTTCGCAAAGTATTTCAGATAATCCTTAA

Homology

[Close]

BLAST of CSPI03G45800.1 vs. Swiss-Prot
Match: Y5566_ARATH (Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-08
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1


Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of CSPI03G45800.1 vs. TrEMBL
Match: A0A0A0LE40_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 7.6e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]

BLAST of CSPI03G45800.1 vs. TrEMBL
Match: V7AVS6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-17
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 17  ASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAP 76
           AS++FP+GL LL+  L   CCFFCCCLHWEKLR F      +   H HH P     +P P
Sbjct: 10  ASIAFPLGLALLVALLLFFCCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPP 69

Query: 77  DKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            K      + K+NR +S  VLMPGDEVP+FIA+ACP
Sbjct: 70  HKPGFPVLMVKQNRGESFPVLMPGDEVPKFIALACP 105

[Close]

BLAST of CSPI03G45800.1 vs. TrEMBL
Match: U5GPZ9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 55/108 (50.93%), Postives = 65/108 (60.19%), Query Frame = 1


Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVS 77
           SL FPVGLVLLL  LF M   F CCLHWEK+ S LG     +H H  I +     P K S
Sbjct: 10  SLGFPVGLVLLLFMLFIMSGLFSCCLHWEKVLSLLGVSSEDNHSH--IEEDVEHLPQKSS 69

Query: 78  PIHSIWKENRPQSVSVLMPGDEVPRFIAMACPA------LVEIVVQKP 120
           P H   K N+ QS+ VLMPGD+VP+FIAMACP        + + +QKP
Sbjct: 70  PPHVKLKRNQGQSLPVLMPGDQVPKFIAMACPCEPPRTEKITVQIQKP 115

[Close]

BLAST of CSPI03G45800.1 vs. TrEMBL
Match: A0A0L9UFX4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g201800 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 12  EAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH---LHHHHPPIPQP 71
           +A   AS++FP+GL LL+  LF  C FFCCCLHWEKLR F            HHP    P
Sbjct: 5   DASSGASIAFPLGLALLIAVLFFFCTFFCCCLHWEKLRPFFPFSSRNITTLPHHP--LTP 64

Query: 72  QSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            +P P K      + K+N  +S  VLMPGDEVP+FIA+ACP
Sbjct: 65  ITPPPHKPGFPVLMMKQNSGESFPVLMPGDEVPKFIALACP 103

[Close]

BLAST of CSPI03G45800.1 vs. TrEMBL
Match: A0A0S3RCH2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G108200 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-15
Identity = 50/101 (49.50%), Postives = 61/101 (60.40%), Query Frame = 1


Query: 12  EAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDH---LHHHHPPIPQP 71
           +A   AS++FP+GL LL+  LF  C FFCCCLHWEKLR F            HHP    P
Sbjct: 5   DASSGASIAFPLGLALLIAVLFFFCTFFCCCLHWEKLRPFFPFSSRNITTLPHHP--LTP 64

Query: 72  QSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            +P P K      + K+N  +S  VLMPGDEVP+FIA+ACP
Sbjct: 65  ITPPPHKPGFPVLMMKQNSGESFPVLMPGDEVPKFIALACP 103

[Close]

BLAST of CSPI03G45800.1 vs. TAIR10
Match: AT5G65660.1 (AT5G65660.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09
Identity = 44/116 (37.93%), Postives = 56/116 (48.28%), Query Frame = 1


Query: 18  SLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFL-----GCPDHLHHHHPPIPQPQSPA 77
           SL FP+G  LLL  +F +   F CC HW+K RS       G P      +P  P+P  P 
Sbjct: 18  SLGFPLGTALLLIIIFSLSGIFSCCYHWDKHRSLRRSLANGRPSADIESNPYKPKP--PF 77

Query: 78  PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPAL------VEIVVQKPSQS 123
           P+   P        +  SV VLMPGD  P+FIA+ CP        + + VQ P QS
Sbjct: 78  PEMKKP--------QNLSVPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQS 123

[Close]

BLAST of CSPI03G45800.1 vs. NCBI nr
Match: gi|778687646|ref|XP_011652602.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 9.5e-70
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60
           MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH
Sbjct: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60

Query: 61  HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS 120
           HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS
Sbjct: 61  HHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKPS 120

Query: 121 QSISDNP 128
           QSISDNP
Sbjct: 121 QSISDNP 127

[Close]

BLAST of CSPI03G45800.1 vs. NCBI nr
Match: gi|449436926|ref|XP_004136243.1| (PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-68
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60
           MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH
Sbjct: 1   MRDREMEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHH 60

Query: 61  HHPPIPQPQSPAPDKVSPIHS-IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP 120
           HHPPIPQPQSPAPDKVSPIHS IWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP
Sbjct: 61  HHPPIPQPQSPAPDKVSPIHSKIWKENRPQSVSVLMPGDEVPRFIAMACPALVEIVVQKP 120

Query: 121 SQSISDNP 128
           SQSISDNP
Sbjct: 121 SQSISDNP 128

[Close]

BLAST of CSPI03G45800.1 vs. NCBI nr
Match: gi|659132273|ref|XP_008466113.1| (PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo])

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-59
Identity = 115/132 (87.12%), Postives = 118/132 (89.39%), Query Frame = 1


Query: 6   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 65
           MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI
Sbjct: 1   MEYDNREAQDPASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHLHHHHPPI 60

Query: 66  PQPQSPA----PDKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP-------ALVEI 125
           P P SPA    PDK SPIH+IWKENRPQSVSVLMPGDEVPRFIA+ACP       ALVEI
Sbjct: 61  PPPHSPAALSPPDKFSPIHTIWKENRPQSVSVLMPGDEVPRFIALACPPCATAAAALVEI 120

Query: 126 VVQKPSQSISDN 127
           VVQKPSQSISD+
Sbjct: 121 VVQKPSQSISDS 132

[Close]

BLAST of CSPI03G45800.1 vs. NCBI nr
Match: gi|700205157|gb|KGN60290.1| (hypothetical protein Csa_3G893400 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 35  MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 94
           MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL
Sbjct: 1   MCCFFCCCLHWEKLRSFLGCPDHLHHHHPPIPQPQSPAPDKVSPIHSIWKENRPQSVSVL 60

Query: 95  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 128
           MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP
Sbjct: 61  MPGDEVPRFIAMACPALVEIVVQKPSQSISDNP 93

[Close]

BLAST of CSPI03G45800.1 vs. NCBI nr
Match: gi|593328486|ref|XP_007137670.1| (hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris])

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 17  ASLSFPVGLVLLLTFLFCMCCFFCCCLHWEKLRSFLGCPDHL---HHHHPPIPQPQSPAP 76
           AS++FP+GL LL+  L   CCFFCCCLHWEKLR F      +   H HH P     +P P
Sbjct: 10  ASIAFPLGLALLVALLLFFCCFFCCCLHWEKLRPFFPFSSGIISNHPHHTPPYTDTTPPP 69

Query: 77  DKVSPIHSIWKENRPQSVSVLMPGDEVPRFIAMACP 110
            K      + K+NR +S  VLMPGDEVP+FIA+ACP
Sbjct: 70  HKPGFPVLMVKQNRGESFPVLMPGDEVPKFIALACP 105

The following BLAST results are available for this feature:

BLAST of CSPI03G45800.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5566_ARATH	4.6e-08	37.93	Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1	[more]

BLAST of CSPI03G45800.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE40_CUCSA	7.6e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G893400 PE=4 SV=1	[more]
V7AVS6_PHAVU	2.9e-17	52.08	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G145900g PE=4 SV=1	[more]
U5GPZ9_POPTR	1.1e-16	50.93	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10890g PE=4 SV=1	[more]
A0A0L9UFX4_PHAAN	2.7e-15	49.50	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g201800 PE=4 SV=1	[more]
A0A0S3RCH2_PHAAN	2.7e-15	49.50	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G108200 PE=...	[more]

BLAST of CSPI03G45800.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G65660.1	2.6e-09	37.93	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of CSPI03G45800.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778687646\|ref\|XP_011652602.1\|	9.5e-70	100.00	PREDICTED: uncharacterized protein At5g65660-like isoform X2 [Cucumis sativus]	[more]
gi\|449436926\|ref\|XP_004136243.1\|	2.3e-68	99.22	PREDICTED: uncharacterized protein At5g65660-like isoform X1 [Cucumis sativus]	[more]
gi\|659132273\|ref\|XP_008466113.1\|	3.4e-59	87.12	PREDICTED: uncharacterized protein At5g65660-like [Cucumis melo]	[more]
gi\|700205157\|gb\|KGN60290.1\|	1.1e-49	100.00	hypothetical protein Csa_3G893400 [Cucumis sativus]	[more]
gi\|593328486\|ref\|XP_007137670.1\|	4.2e-17	52.08	hypothetical protein PHAVU_009G145900g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G45800	CSPI03G45800	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G45800.1	CSPI03G45800.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G45800.1.utr5p1	CSPI03G45800.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G45800.1.cds1	CSPI03G45800.1.cds1	CDS
CSPI03G45800.1.cds2	CSPI03G45800.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G45800.1.utr3p1	CSPI03G45800.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34291	FAMILY NOT NAMED	coord: 18..127 score: 8.2
None	No IPR available	PANTHER	PTHR34291:SF1	SUBFAMILY NOT NAMED	coord: 18..127 score: 8.2