CSPI03G25070.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G25070.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr3 : 22288700 .. 22289466 (-)
Sequence length	648

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGACAATTCATTTTGGGCTCACTTATTCGTAAGGTCCCAGAGAATTCAATATATTCGGTTACTCTGACAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCGTAGCTTGCCAAGCATTGTGGTTAAGATGCCTGGTTAGCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

mRNA sequence

ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCGACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACAGAGTACAGAAGCATCGTTAGTTGTCTTAGATACTTATTGAATACAAGGCCAGATCTTTTATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGTGATTTAGCTGGTGATCTCGACGGGAGGAAAAGCACAAGTGGAATGACATTCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCGAAGCCGAGTTCATTGCAGCCACTACCCGAGATAGTCAGAATGGAGCCAAAGCCGGTAACATTATTTGTGGACAACAAATCCACGATAGCTCTCATGAAGAACCTGTATTTCATGGTCGCAACAAGCACATAGATACACGTTTTCATTTCATTCGAGACTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACGAGCCGATGTCCTGACTAAAGCATTGACGGGAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAG

Homology

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BLAST of CSPI03G25070.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 67/217 (30.88%), Postives = 105/217 (48.39%), Query Frame = 1


Query: 31   YRSIVSCLRY-LLNTRPDLLYVVGM------------------ASRYMERPT--TMHYKV 90
            Y S V  L Y ++ TRPD+ + VG+                    RY+   T   + +  
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGG 1170

Query: 91   VKQIL-----SDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEFIAATTR 150
               IL     +D+AGD+D RKS++G  F  +   +SW S+ QK VALS+ EAE+IAAT  
Sbjct: 1171 SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATET 1230

Query: 151  DSQN------------GAKAGNIICGQQIHDSSHEEPVFHGRNKHIDTRFHFIRDCVENG 210
              +               K   + C  Q      +  ++H R KHID R+H+IR+ V++ 
Sbjct: 1231 GKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDE 1290

[Close]

BLAST of CSPI03G25070.1 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 74/253 (29.25%), Postives = 113/253 (44.66%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYL-LNTRPDLLYVV------- 60
            M +CNA   P+  K            + T  RS++ CL Y+ L TRPDL   V       
Sbjct: 1152 MENCNAVSTPLPSKINYELLNSDEDCN-TPCRSLIGCLMYIMLCTRPDLTTAVNILSRYS 1211

Query: 61   -----------GMASRYMERPTTMHY----------KVVKQILSDLAGDLDGRKSTSGMT 120
                           RY++    M            K++  + SD AG    RKST+G  
Sbjct: 1212 SKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYL 1271

Query: 121  FYLNE-SLVSWNSQKQKTVALSSCEAEFIA--ATTRD--------SQNGAKAGNIICGQQ 180
            F + + +L+ WN+++Q +VA SS EAE++A     R+        +    K  N I   +
Sbjct: 1272 FKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPI---K 1331

Query: 181  IHDSSH------EEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALT 208
            I++ +         P  H R KHID ++HF R+ V+N  I +E++ T  Q AD+ TK L 
Sbjct: 1332 IYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLP 1391

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BLAST of CSPI03G25070.1 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.5e-66
Identity = 138/255 (54.12%), Postives = 166/255 (65.10%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M +CN+   P++P++QL KD EG P+DATEYR I+  LRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPT MH+K VKQIL                           SDLAGDLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQN-------------GAKAGNIICGQQ 180
            +N+SLV+W+SQKQKTVALSSCEAEF+AATT   Q                KA  +    +
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNR 1334

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CV+ GQI+VEFV T EQRAD LTK L   KL  
Sbjct: 1335 SAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRTEEQRADALTKGLPAAKLVT 1394

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BLAST of CSPI03G25070.1 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.3e-65
Identity = 136/255 (53.33%), Postives = 163/255 (63.92%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV++ EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSSEEQRADAMTKGLPAAKLAT 1412

[Close]

BLAST of CSPI03G25070.1 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 8.3e-65
Identity = 136/255 (53.33%), Postives = 162/255 (63.53%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV + EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGLPAAKLAT 1412

[Close]

BLAST of CSPI03G25070.1 vs. TrEMBL
Match: A0A0A9FJ50_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 9.1e-64
Identity = 141/255 (55.29%), Postives = 164/255 (64.31%), Query Frame = 1


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M D N TKYPME KAQ+HKD++G P+DATEYR +V CLRYLL+TRPDL + VG+ASR+ME
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPT MH K+VKQ+L                           SDL GDLD RKST GM FY
Sbjct: 141 RPTVMHQKLVKQMLRYLKGTIDLGLVYVQGTGKEVLTGFTDSDLGGDLDDRKSTGGMAFY 200

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-----------NGAKAGNI--ICGQQ 180
           LN +LVSW SQKQKTVALSSCEAEFIAA T   Q            G K G++       
Sbjct: 201 LNNNLVSWTSQKQKTVALSSCEAEFIAAATAACQALWLKSMLEELTGEKQGSVKLYVDNN 260

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
              +  + PVFHGR+KHID R+HFIRD V  G I V ++ T EQRADVLTKAL   KL A
Sbjct: 261 SAIALMKNPVFHGRSKHIDMRYHFIRDYVCKGHISVHWICTEEQRADVLTKALAAGKLQA 320

[Close]

BLAST of CSPI03G25070.1 vs. TrEMBL
Match: Q7XMW3_ORYSJ (OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=4 SV=2)

HSP 1 Score: 243.0 bits (619), Expect = 3.2e-61
Identity = 131/249 (52.61%), Postives = 160/249 (64.26%), Query Frame = 1


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M DCN+T  P+E ++QLHKD EG+ +D TEYR ++ CLRYLL+TRPDL Y VG+ SR+ME
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFME 154

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPT MH+K +KQIL                           SDLAGD D  +STSGM FY
Sbjct: 155 RPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRSTSGMAFY 214

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRD-----------SQNGAKAG--NIICGQQ 180
            N SLVSW+SQKQKTVALSSCEAEF+AAT                 GA+A    +    +
Sbjct: 215 FNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNK 274

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 210
              +  + PVFHGR+KHIDTR+HFIR+CVE+G+I +EFV T EQRAD LTK L   +LA 
Sbjct: 275 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTKGLPAARLAT 334

[Close]

BLAST of CSPI03G25070.1 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-06
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 1


Query: 82  DGRKSTSGMTFYLNESLVSWNSQKQKTVALSSCEAEF------------IAATTRDSQNG 141
           D R+ST+G   +L  SL+SW S+KQ+ V+ SS EAE+            +A   R+ Q  
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 142 -AKAGNIICGQQIHDSSHEEPVFHGRNKHIDTRFHFIRD 168
            +K   + C            VFH R KHI++  H +R+
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of CSPI03G25070.1 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.8e-06
Identity = 44/146 (30.14%), Postives = 62/146 (42.47%), Query Frame = 1


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTR--------------- 60
           M DC     P+  K      T   P D +++RSIV  L+YL  TR               
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  -P-----DLL-----YVVGMASRYMERPTTMHYKVVKQILSDLAGDLDGRKSTSGMTFYL 120
            P     DLL     YV G     +         V     SD AG    R+ST+G   +L
Sbjct: 131 EPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFL 190

[Close]

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 258.5 bits (659), Expect = 1.1e-65
Identity = 138/255 (54.12%), Postives = 166/255 (65.10%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M +CN+   P++P++QL KD EG P+DATEYR I+  LRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1155 MMECNSVSIPIDPRSQLSKDPEGHPVDATEYRRIIGSLRYLLHTRPDLSYAVGVASRFME 1214

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPT MH+K VKQIL                           SDLAGDLD R+ST GM FY
Sbjct: 1215 RPTVMHFKAVKQILRYIKGTMDYGLVYAAGTGALKITGYTDSDLAGDLDDRRSTGGMAFY 1274

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQN-------------GAKAGNIICGQQ 180
            +N+SLV+W+SQKQKTVALSSCEAEF+AATT   Q                KA  +    +
Sbjct: 1275 INQSLVAWSSQKQKTVALSSCEAEFMAATTAACQALWLRLLLAEVAGVEEKAVKLFVDNR 1334

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CV+ GQI+VEFV T EQRAD LTK L   KL  
Sbjct: 1335 SAIALMKNPVFHGRSKHIDTRYHFIRECVDGGQIVVEFVRTEEQRADALTKGLPAAKLVT 1394

[Close]

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 255.4 bits (651), Expect = 9.1e-65
Identity = 136/255 (53.33%), Postives = 163/255 (63.92%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKPVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV++ EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVSSEEQRADAMTKGLPAAKLAT 1412

[Close]

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 255.0 bits (650), Expect = 1.2e-64
Identity = 136/255 (53.33%), Postives = 162/255 (63.53%), Query Frame = 1


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++ CLRYLL+TRPDL Y VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
            RPTTMH K VK IL                           SDLAGD+D R+ST GM FY
Sbjct: 1233 RPTTMHLKAVKMILRYLKGTLDSGLVFASGSGSLDITGFTDSDLAGDMDDRRSTGGMAFY 1292

Query: 121  LNESLVSWNSQKQKTVALSSCEAEFIAATTRDSQ-------------NGAKAGNIICGQQ 180
            +N SLVSW SQKQKTVALSSCEAEF+AAT                    AK   +    +
Sbjct: 1293 VNSSLVSWCSQKQKTVALSSCEAEFMAATAAACHALWLRALLSEMMGTEAKRVKLFVDNK 1352

Query: 181  IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 216
               +  + PVFHGR+KHIDTR+HFIR+CVE+GQI++EFV + EQRAD +TK L   KLA 
Sbjct: 1353 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGQILIEFVRSEEQRADAMTKGLPAAKLAT 1412

[Close]

BLAST of CSPI03G25070.1 vs. NCBI nr
Match: gi|38345657|emb|CAE04421.2| (OSJNBb0040D15.11 [Oryza sativa Japonica Group])

HSP 1 Score: 243.0 bits (619), Expect = 4.7e-61
Identity = 131/249 (52.61%), Postives = 160/249 (64.26%), Query Frame = 1


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYME 60
           M DCN+T  P+E ++QLHKD EG+ +D TEYR ++ CLRYLL+TRPDL Y VG+ SR+ME
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFME 154

Query: 61  RPTTMHYKVVKQIL---------------------------SDLAGDLDGRKSTSGMTFY 120
           RPT MH+K +KQIL                           SDLAGD D  +STSGM FY
Sbjct: 155 RPTVMHFKALKQILRYLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDSRSTSGMAFY 214

Query: 121 LNESLVSWNSQKQKTVALSSCEAEFIAATTRD-----------SQNGAKAG--NIICGQQ 180
            N SLVSW+SQKQKTVALSSCEAEF+AAT                 GA+A    +    +
Sbjct: 215 FNGSLVSWSSQKQKTVALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNK 274

Query: 181 IHDSSHEEPVFHGRNKHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAA 210
              +  + PVFHGR+KHIDTR+HFIR+CVE+G+I +EFV T EQRAD LTK L   +LA 
Sbjct: 275 SAIALMKNPVFHGRSKHIDTRYHFIRECVESGKIQIEFVRTEEQRADALTKGLPAARLAT 334

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BLAST of CSPI03G25070.1 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 226.9 bits (577), Expect = 3.5e-56
Identity = 124/234 (52.99%), Postives = 150/234 (64.10%), Query Frame = 1


Query: 16   QLHKDTEGAPIDATEYRSIVSCLRYLLNTRPDLLYVVGMASRYMERPTTMHYKVVKQIL- 75
            +LHKD +G+ +D TEYR ++ CLRYLL+TRPDL Y VG+ASR+MERPT MH+K VKQIL 
Sbjct: 1103 ELHKDAQGSTVDPTEYRRVIGCLRYLLHTRPDLSYAVGVASRFMERPTVMHFKAVKQILR 1162

Query: 76   --------------------------SDLAGDLDGRKSTSGMTFYLNESLVSWNSQKQKT 135
                                      SDLAGD D R+STSGM FY N SLVSW+SQKQKT
Sbjct: 1163 YLKGTINCGLMFSGGNGAVEITGFTDSDLAGDSDDRRSTSGMAFYFNGSLVSWSSQKQKT 1222

Query: 136  VALSSCEAEFIAATTRD-----------SQNGAKAG--NIICGQQIHDSSHEEPVFHGRN 195
            VALSSCEAEF+AAT                 GA+A    +    +   +  + PVFHGR+
Sbjct: 1223 VALSSCEAEFMAATAAACHALWLRGLLIEMIGAEARPVKLYVDNKSAIALMKNPVFHGRS 1282

Query: 196  KHIDTRFHFIRDCVENGQIIVEFVNTGEQRADVLTKALTGVKLAAMRQLLGVRN 210
            KHIDTR+HFIR+CVE+G+I +EFV   EQRAD LTK L   +LA  R LLGVR+
Sbjct: 1283 KHIDTRYHFIRECVESGKIQIEFVRIEEQRADALTKGLPAARLATARHLLGVRD 1336

The following BLAST results are available for this feature:

BLAST of CSPI03G25070.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	4.9e-18	30.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	2.7e-16	29.25	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]

BLAST of CSPI03G25070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q10RM4_ORYSJ	7.5e-66	54.12	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8BDZ6_ORYSI	6.3e-65	53.33	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4...	[more]
Q0J8A6_ORYSJ	8.3e-65	53.33	Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1	[more]
A0A0A9FJ50_ARUDO	9.1e-64	55.29	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
Q7XMW3_ORYSJ	3.2e-61	52.61	OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0040D15.11 PE=...	[more]

BLAST of CSPI03G25070.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	2.7e-06	33.33	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.8e-06	30.14	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CSPI03G25070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|108706239\|gb\|ABF94034.1\|	1.1e-65	54.12	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
gi\|218201855\|gb\|EEC84282.1\|	9.1e-65	53.33	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
gi\|113622864\|dbj\|BAF22809.1\|	1.2e-64	53.33	Os08g0125300 [Oryza sativa Japonica Group]	[more]
gi\|38345657\|emb\|CAE04421.2\|	4.7e-61	52.61	OSJNBb0040D15.11 [Oryza sativa Japonica Group]	[more]
gi\|29150404\|gb\|AAO72413.1\|	3.5e-56	52.99	gag-pol polyprotein [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G25070	CSPI03G25070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G25070.1	CSPI03G25070.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G25070.1.cds3	CSPI03G25070.1.cds3	CDS
CSPI03G25070.1.cds2	CSPI03G25070.1.cds2	CDS
CSPI03G25070.1.cds1	CSPI03G25070.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..123 score: 4.0
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 1..123 score: 4.0