CSPI03G23550.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23550.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transcriptional regulator superman
Location	Chr3 : 20472836 .. 20473444 (-)
Sequence length	609

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACGACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAGATGGCAATGGTGGTGATGATGATGACGGCGATGAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCGGTAG

mRNA sequence

ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACGACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAGATGGCAATGGTGGTGATGATGATGACGGCGATGAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCGGTAG

Coding sequence (CDS)

ATGGACCCTGACCATATTCCAACAACCACCACCATCGCTGCCACTACCACTACCGACCAAGACCAGAGTTCAAAACCAACAACCGAAGACACTGATCAAATCAACAACGAAATGGGTAGTGGACGCTCCTACGAGTGCGTATTTTGCAAACGAGGGTTCACGACGGCTCAAGCCCTAGGTGGCCACATGAACATTCACCGCAAAGACCGTGTTAAAAACAAGCCTAATACTCCTTCTAAGCCTGAACCCTTCACCAACCATTCTTCAACACTTCGCCCGATGTTGACAACCACTGCTGCAGTGACGACAGTATCTCATCACCAATCTTTTCAAACCTATTTCCCCACTTCTTCCACTTGGTGCTTGGGTACTACTACCTCATCACCACCTCACGATCATCAATTCTCATATGTACATAACAACCCTCAAGTTTTGAATACTTTCAAGGATCAAAATTGGACGACAACCAATATGAGCCTCGCCTCGCAGTCGTCGCCTACCCTTGCCTTGAGTGATGGTCGGGACAAGAGATCAGATGGCAATGGTGGTGATGATGATGACGGCGATGAAGAACTCGATTTGGAGCTTCGACTTGGACATGATCGGTAG

Homology

[Close]

BLAST of CSPI03G23550.1 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-07
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 21 DQSSKPTTEDTDQ-INNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVK 73
          D  S   ++++ Q +++ +   RSY C FC RGF+ AQALGGHMNIHR+DR K
Sbjct: 11 DDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAK 63

[Close]

BLAST of CSPI03G23550.1 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 42 RSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNTPS 80
          RSY C FC R F +AQALGGHMN+HR+DR + K  + S
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

[Close]

BLAST of CSPI03G23550.1 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.3e-06
Identity = 60/186 (32.26%), Postives = 83/186 (44.62%), Query Frame = 1


Query: 29  EDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVK-------NKPNTPSKP 88
           +D D +       RSY C FCKR F +AQALGGHMN+HR+DR +       +  +TPS P
Sbjct: 32  QDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSPP 91

Query: 89  EPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTWCLGTTTSSPPHDHQFSYVHNN 148
            P  N+S        +T A +   HH    T FPT S         S P          +
Sbjct: 92  YPNPNYS-------YSTMANSPPPHHSPL-TLFPTLS-------PPSSPRYRAGLIRSLS 151

Query: 149 PQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDK--RSDG------NGGDDDDGDEELD 200
           P+  +T ++   T  +  L      T   S    K  R+D         G  ++ +++LD
Sbjct: 152 PKSKHTPENACKTKKSSLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINESEQDLD 202

[Close]

BLAST of CSPI03G23550.1 vs. TrEMBL
Match: A0A0A0LD93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426920 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.3e-63
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60
           MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG
Sbjct: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60

Query: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120
           GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW
Sbjct: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120

Query: 121 CLGTTTSSPPHDHQFSYV 139
           CLG+      ++ + + V
Sbjct: 121 CLGSKLDDNQYEPRLAVV 138

[Close]

BLAST of CSPI03G23550.1 vs. TrEMBL
Match: B9H8J6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24290g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.6e-23
Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1


Query: 19  DQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNT- 78
           D+D  S    E TD+   + G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++P++ 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 79  PSKPEPFTNHSSTLR--PMLTTTAAVTTVSH--HQSFQTYFPTSSTWCLGTTTSSPPHDH 138
           PS          + R  P L +  A     H  H ++QT+FP SSTW +G   S     H
Sbjct: 68  PSFSSKVDEDFPSFRGYPPLQSYPAHYPTPHEVHTNYQTFFPLSSTWGIG---SPYAQQH 127

Query: 139 QFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGDEELD 198
              +    PQ L  F +        SL+ Q  P+    + ++K  +G+  DDD     LD
Sbjct: 128 NGDFYAQTPQHLYPFGED---ICRGSLSQQIDPSHVDDNTKEKIEEGSEADDD-----LD 184

Query: 199 LELRLGHD 202
           LELRLGHD
Sbjct: 188 LELRLGHD 184

[Close]

BLAST of CSPI03G23550.1 vs. TrEMBL
Match: B9GS39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04250g PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.6e-22
Identity = 79/188 (42.02%), Postives = 108/188 (57.45%), Query Frame = 1


Query: 19  DQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNT- 78
           +  +SS    E TD+ + + G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++P++ 
Sbjct: 8   EDSKSSSDEEEITDRSDQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 79  PSKPEPFTNHSSTLR--PMLTTTAAVTTVSH--HQSFQTYFPTSSTWCLGTTTSSPPHDH 138
           PS         ++ +  P + +        H  H ++QT+FP S+TW +G   S     H
Sbjct: 68  PSLSSKVDEDYASFQGYPPIQSYPPHYPTPHEVHINYQTFFPASTTWGIG---SPYAQQH 127

Query: 139 QFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGDEELD 198
              +   +P  L  F D +W     SL+ Q+ P+    + ++K  DG G DD     ELD
Sbjct: 128 NGDFYVQSPHHLYPFGD-DW---RRSLSLQTGPSHVDDNTKEKIEDGIGADD-----ELD 183

Query: 199 LELRLGHD 202
           LELRLGHD
Sbjct: 188 LELRLGHD 183

[Close]

BLAST of CSPI03G23550.1 vs. TrEMBL
Match: A0A0D2P8X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G144000 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.1e-22
Identity = 81/192 (42.19%), Postives = 111/192 (57.81%), Query Frame = 1


Query: 17  TTDQDQSSKPTTEDTD---QINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVK- 76
           T  Q + SK ++E++D   Q N+++GSGRSYECVFCKRGFTTAQALGGHMNIHRKDR K 
Sbjct: 3   TNHQHEDSKSSSEESDRSEQSNDDVGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKS 62

Query: 77  NKPNT---PSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTWCLGTTTSSP 136
           ++PN+    S      N++S            +   H+ S+Q +FP SS W        P
Sbjct: 63  SRPNSVPIVSGKVDDENYASLRSSSSYLPIIQSYQPHYVSYQAFFPASSGW--DFRPPHP 122

Query: 137 PHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGD 196
           PH  +  +V+N+ + LN F++++W   N++L    S         +K+ D     DD   
Sbjct: 123 PHGDEL-FVNNSSRYLNPFREEDW-PRNLNLRIGPSHV-----DENKKIDHGSSQDD--- 181

Query: 197 EELDLELRLGHD 202
            ELDLELRLGHD
Sbjct: 183 -ELDLELRLGHD 181

[Close]

BLAST of CSPI03G23550.1 vs. TrEMBL
Match: A0A061DQ22_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_004127 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.0e-21
Identity = 82/195 (42.05%), Postives = 116/195 (59.49%), Query Frame = 1


Query: 19  DQDQSSKPTTEDTD---QINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKP 78
           +Q + SK ++E+TD   Q N++MG+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++P
Sbjct: 4   NQLEDSKSSSEETDRSEQSNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRP 63

Query: 79  NT----PSKPEPFTNHSSTLR---PMLTTTAAVTTVSH-HQSFQTYFPTSSTWCLGTTTS 138
           ++      K +   N++S +    P + +    + V   H S+Q +FP    W       
Sbjct: 64  SSVPIVSGKADENLNYASLMSYSYPPIQSQPHYSMVPEVHVSYQAFFPAPG-WGF----- 123

Query: 139 SPPHDHQFSYVH-NNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDD 198
            PPH H    ++ +N Q LN F  ++W +   SL  +  P+    D  +K++DG+  +D 
Sbjct: 124 RPPHTHHSDELYVDNSQHLNPF-GEDWPS---SLNLRIGPSRV--DDENKKTDGSSQED- 181

Query: 199 DGDEELDLELRLGHD 202
               ELDLELRLGHD
Sbjct: 184 ----ELDLELRLGHD 181

[Close]

BLAST of CSPI03G23550.1 vs. TAIR10
Match: AT5G43540.1 (AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-10
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 21 DQSSKPTTEDTDQINNEMGSG--------RSYECVFCKRGFTTAQALGGHMNIHRKDRV 72
          ++SS  T+ +T  + +   S         R YEC FCKRGFT AQALGGHMNIHR+DR+
Sbjct: 4  ERSSSSTSSETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHRRDRL 62

[Close]

BLAST of CSPI03G23550.1 vs. TAIR10
Match: AT3G09290.1 (AT3G09290.1 telomerase activator1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 21 DQSSKPTTEDTDQ-INNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVK 73
          D  S   ++++ Q +++ +   RSY C FC RGF+ AQALGGHMNIHR+DR K
Sbjct: 11 DDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAK 63

[Close]

BLAST of CSPI03G23550.1 vs. TAIR10
Match: AT3G53820.1 (AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 42 RSYECVFCKRGFTTAQALGGHMNIHRKDRVK 73
          R Y C FC+RGF+ AQALGGHMNIHRKDR K
Sbjct: 19 RPYICEFCERGFSNAQALGGHMNIHRKDRAK 49

[Close]

BLAST of CSPI03G23550.1 vs. TAIR10
Match: AT2G42410.1 (AT2G42410.1 zinc finger protein 11)

HSP 1 Score: 56.2 bits (134), Expect = 2.7e-08
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1


Query: 42  RSYECVFCKRGFTTAQALGGHMNIHRKDRVKNK--PNTPSKP-------EPFTNHSSTLR 101
           ++Y C FC+R F +AQALGGHMN+HR+DR K +  P+   +P        P  N SS+  
Sbjct: 47  KNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHHHTPIANPNPNFSSSSS 106

Query: 102 PMLTTTAAVTTVSHHQSFQTYFPTSSTWCLGTTTS 128
              TT     ++++ +S  T FP++    L +TTS
Sbjct: 107 SSTTTAHLEPSLTNQRSKTTPFPSARFDLLDSTTS 141

[Close]

BLAST of CSPI03G23550.1 vs. TAIR10
Match: AT3G23140.1 (AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 60/189 (31.75%), Postives = 83/189 (43.92%), Query Frame = 1


Query: 33  QINNEMGSG---RSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNTPSKPEPFTNHSS 92
           QI++  GSG   R+Y+C  CKRGFT  QALGGH NIHR++R           E + + SS
Sbjct: 7   QIDSGSGSGENRRTYDCDICKRGFTNPQALGGHNNIHRRER-----------ERYPSSSS 66

Query: 93  TLRPMLTTTAAVTTVSHHQSFQTYFPTSSTWCLGTTTSSPPHDHQF-SYVH--NNPQVLN 152
           +              SH   F    P+ S       T+ PP+     SY+H  + P +  
Sbjct: 67  S--------------SHSFPFSLPLPSQSPSSSTNFTNPPPYFPTIESYLHQGSQPPINP 126

Query: 153 TFKDQNWTTTNMS-----LASQSSPTLALS--------DGRDKRSDGNGGDDDDGDEELD 203
           +   Q + +++ S      A  +S  L LS        D    RS    G     D +LD
Sbjct: 127 SHNTQYFGSSSSSRGGGRFAQGASHDLNLSLGLGSMNEDDDTHRSPPETGGSQPQDGDLD 170

[Close]

BLAST of CSPI03G23550.1 vs. NCBI nr
Match: gi|449462920|ref|XP_004149183.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis sativus])

HSP 1 Score: 404.1 bits (1037), Expect = 1.5e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


Query: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60
           MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG
Sbjct: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60

Query: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120
           GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW
Sbjct: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120

Query: 121 CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDG 180
           CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDG
Sbjct: 121 CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDG 180

Query: 181 NGGDDDDGDEELDLELRLGHDR 203
           NGGDDDDGDEELDLELRLGHDR
Sbjct: 181 NGGDDDDGDEELDLELRLGHDR 202

[Close]

BLAST of CSPI03G23550.1 vs. NCBI nr
Match: gi|659109033|ref|XP_008454512.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 3.4e-98
Identity = 186/202 (92.08%), Postives = 191/202 (94.55%), Query Frame = 1


Query: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60
           MDPD IPTTTT+AATT  DQ QSSK TTE+TDQINNEMGSGRSYECVFCKRGFTTAQALG
Sbjct: 1   MDPDLIPTTTTVAATT--DQHQSSKTTTEETDQINNEMGSGRSYECVFCKRGFTTAQALG 60

Query: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120
           GHMNIHRKDRVK KPNTPSKPEPF+NHSS LRPMLTTTAA TT+SHHQSFQTYFPTSSTW
Sbjct: 61  GHMNIHRKDRVKTKPNTPSKPEPFSNHSSNLRPMLTTTAAATTISHHQSFQTYFPTSSTW 120

Query: 121 CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDG 180
           CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSD RDKRSD 
Sbjct: 121 CLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDRRDKRSDR 180

Query: 181 NGGDDDDGDEELDLELRLGHDR 203
           NGGDD+D DEELDLELRLGHDR
Sbjct: 181 NGGDDEDDDEELDLELRLGHDR 200

[Close]

BLAST of CSPI03G23550.1 vs. NCBI nr
Match: gi|700202873|gb|KGN58006.1| (hypothetical protein Csa_3G426920 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.0e-62
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60
           MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG
Sbjct: 1   MDPDHIPTTTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALG 60

Query: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120
           GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW
Sbjct: 61  GHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFPTSSTW 120

Query: 121 CLGTTTSSPPHDHQFSYV 139
           CLG+      ++ + + V
Sbjct: 121 CLGSKLDDNQYEPRLAVV 138

[Close]

BLAST of CSPI03G23550.1 vs. NCBI nr
Match: gi|743839717|ref|XP_011026015.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Populus euphratica])

HSP 1 Score: 116.3 bits (290), Expect = 6.2e-23
Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1


Query: 19  DQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNT- 78
           D+D  S    E TD+   + G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++P++ 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 79  PSKPEPFTNHSSTLR--PMLTTTAAVTTVSH--HQSFQTYFPTSSTWCLGTTTSSPPHDH 138
           PS          + R  P L +       +H  H ++QT+FP SSTW +G   S     H
Sbjct: 68  PSFSSKVDEDFPSFRGYPPLQSYPPHYPTTHEVHTNYQTFFPLSSTWGMG---SPYAQQH 127

Query: 139 QFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGDEELD 198
              +    PQ L  F +        SL+ Q  P+    + ++K  DG+  DDD     LD
Sbjct: 128 NGDFYAQTPQHLYPFGED---IRRGSLSQQIDPSHVDDNTKEKIEDGSEADDD-----LD 184

Query: 199 LELRLGHD 202
           LELRLGHD
Sbjct: 188 LELRLGHD 184

[Close]

BLAST of CSPI03G23550.1 vs. NCBI nr
Match: gi|224082768|ref|XP_002306831.1| (hypothetical protein POPTR_0005s24290g [Populus trichocarpa])

HSP 1 Score: 115.9 bits (289), Expect = 8.1e-23
Identity = 81/188 (43.09%), Postives = 104/188 (55.32%), Query Frame = 1


Query: 19  DQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKNKPNT- 78
           D+D  S    E TD+   + G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++P++ 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 79  PSKPEPFTNHSSTLR--PMLTTTAAVTTVSH--HQSFQTYFPTSSTWCLGTTTSSPPHDH 138
           PS          + R  P L +  A     H  H ++QT+FP SSTW +G   S     H
Sbjct: 68  PSFSSKVDEDFPSFRGYPPLQSYPAHYPTPHEVHTNYQTFFPLSSTWGIG---SPYAQQH 127

Query: 139 QFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRDKRSDGNGGDDDDGDEELD 198
              +    PQ L  F +        SL+ Q  P+    + ++K  +G+  DDD     LD
Sbjct: 128 NGDFYAQTPQHLYPFGED---ICRGSLSQQIDPSHVDDNTKEKIEEGSEADDD-----LD 184

Query: 199 LELRLGHD 202
           LELRLGHD
Sbjct: 188 LELRLGHD 184

The following BLAST results are available for this feature:

BLAST of CSPI03G23550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAC1_ARATH	2.1e-07	50.94	Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1	[more]
RBE_ARATH	3.1e-06	60.53	Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE...	[more]
SUP_ARATH	5.3e-06	32.26	Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1	[more]

BLAST of CSPI03G23550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD93_CUCSA	7.3e-63	89.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426920 PE=4 SV=1	[more]
B9H8J6_POPTR	5.6e-23	43.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24290g PE=4 SV=1	[more]
B9GS39_POPTR	1.6e-22	42.02	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04250g PE=4 SV=1	[more]
A0A0D2P8X6_GOSRA	8.1e-22	42.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G144000 PE=4 SV=1	[more]
A0A061DQ22_THECC	4.0e-21	42.05	C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=T...	[more]

BLAST of CSPI03G23550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43540.1	8.3e-10	50.85	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G09290.1	1.2e-08	50.94	telomerase activator1	[more]
AT3G53820.1	1.2e-08	77.42	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G42410.1	2.7e-08	37.89	zinc finger protein 11	[more]
AT3G23140.1	1.3e-07	31.75	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CSPI03G23550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462920\|ref\|XP_004149183.1\|	1.5e-109	100.00	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis sativus]	[more]
gi\|659109033\|ref\|XP_008454512.1\|	3.4e-98	92.08	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]	[more]
gi\|700202873\|gb\|KGN58006.1\|	1.0e-62	89.86	hypothetical protein Csa_3G426920 [Cucumis sativus]	[more]
gi\|743839717\|ref\|XP_011026015.1\|	6.2e-23	43.09	PREDICTED: transcriptional regulator SUPERMAN-like [Populus euphratica]	[more]
gi\|224082768\|ref\|XP_002306831.1\|	8.1e-23	43.09	hypothetical protein POPTR_0005s24290g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G23550	CSPI03G23550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G23550.1	CSPI03G23550.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G23550.1.cds1	CSPI03G23550.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 46..66 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 44..71 score: 10
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 42..70 score: 5.
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 20..201 score: 5.6
None	No IPR available	PANTHER	PTHR26374:SF211	SUBFAMILY NOT NAMED	coord: 20..201 score: 5.6
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 41..70 score: 2.3