CSPI03G23440.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAATGAGAACTCCACCAATAATAATTCCCTTAACTATCACGGTGAAGAATCGCCGGAGGACAGTGGGTGGACCATTTACTTTGAAGATTTCCTCAACACAGACAACCCTAACTCTCATAATCAATCACTCACTTCCTTCTCAGCTTCCTCCCACTTTTCTCTTGATGTCACCGACGCTGCCTCCTCCGTCGCCCATCATAAACTACCTCATGACCACAAAGACCAAGTTTCCGAACAACCCGGGTTCGGTTACAAGGATGATGATCATATCAACTTTTTTAAGAAGAGGAAGATGATCAAAGAGTTGTTTGTTAAAGATGAAGCTTTGGAGGATACTGCTAGCTCTCCTGTTAATAGTCCCAAGGTCTCTCTCTCTCTTTAATTTCTTTATTCTATTTTTGTTGTTAATTACCATAGGAATAGAGAAGATTAAATTTATTAAACTCAGATTCCGCATTTGTTAATCAACAGATATGATTGTAACAAATGTTGTGTTACAATTCTTCTTTTCAACCTATAAAAATCAAACATTACATTGATTTTTAATTACTATATTAAAAAACAATAATAAAAGTGACTTTAACGACCGTTTTAAAATCTCTCCCATATACCGTAAATAGGATAAGATTTTCTGTTTTATTGATCCTATGATATTATTTCTTTTTCTCAAATCAATTTTAAATTCATCCAAACTCTCGACTTTCGCTTAAGTTTTTGAGTTCAATAGTATTTTAACGATGTCGGGTTTGGGCTGATATATGAGTTTTGTTTGGTCTGAAAATATACAGATATCTGGTTCAACCTACTTTAGCAAGAACCAGAAGCACAGAGACAATTTAATAGCTCCTGAGGTAAATATATATAGTGGTTTTTGTTTTTAATTTTCATTTAATTTACTCAAGCAGAAGAGAGTGGAAATAAGTTTTGGAAAAATATTAAATAATGAAAGTGTTTTGTTTTTTTTTTTTTTGGTGCAGGTGGAGGAGAGAAGAGAAATGGATAATCTTATTGGAATTGGCAATGACTACACAGAACTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTGTCTATGGTTCTTAATTATTTACCTCAATAA ATGGCCAATGAGAACTCCACCAATAATAATTCCCTTAACTATCACGGTGAAGAATCGCCGGAGGACAGTGGGTGGACCATTTACTTTGAAGATTTCCTCAACACAGACAACCCTAACTCTCATAATCAATCACTCACTTCCTTCTCAGCTTCCTCCCACTTTTCTCTTGATGTCACCGACGCTGCCTCCTCCGTCGCCCATCATAAACTACCTCATGACCACAAAGACCAAGTTTCCGAACAACCCGGGTTCGGTTACAAGGATGATGATCATATCAACTTTTTTAAGAAGAGGAAGATGATCAAAGAGTTGTTTGTTAAAGATGAAGCTTTGGAGGATACTGCTAGCTCTCCTGTTAATAGTCCCAAGATATCTGGTTCAACCTACTTTAGCAAGAACCAGAAGCACAGAGACAATTTAATAGCTCCTGAGGTGGAGGAGAGAAGAGAAATGGATAATCTTATTGGAATTGGCAATGACTACACAGAACTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTGTCTATGGTTCTTAATTATTTACCTCAATAA ATGGCCAATGAGAACTCCACCAATAATAATTCCCTTAACTATCACGGTGAAGAATCGCCGGAGGACAGTGGGTGGACCATTTACTTTGAAGATTTCCTCAACACAGACAACCCTAACTCTCATAATCAATCACTCACTTCCTTCTCAGCTTCCTCCCACTTTTCTCTTGATGTCACCGACGCTGCCTCCTCCGTCGCCCATCATAAACTACCTCATGACCACAAAGACCAAGTTTCCGAACAACCCGGGTTCGGTTACAAGGATGATGATCATATCAACTTTTTTAAGAAGAGGAAGATGATCAAAGAGTTGTTTGTTAAAGATGAAGCTTTGGAGGATACTGCTAGCTCTCCTGTTAATAGTCCCAAGATATCTGGTTCAACCTACTTTAGCAAGAACCAGAAGCACAGAGACAATTTAATAGCTCCTGAGGTGGAGGAGAGAAGAGAAATGGATAATCTTATTGGAATTGGCAATGACTACACAGAACTGAAGAAAAGAGGGCTTTGCTTAGTACCTTTGTCTATGGTTCTTAATTATTTACCTCAATAA
BLAST of CSPI03G23440.1 vs. TrEMBL
Match: F6H9B3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0177g00230 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17 Identity = 75/175 (42.86%), Postives = 100/175 (57.14%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TrEMBL
Match: U5GXN2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44530g PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17 Identity = 77/194 (39.69%), Postives = 103/194 (53.09%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TrEMBL
Match: B9I0B6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s13900g PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16 Identity = 70/183 (38.25%), Postives = 99/183 (54.10%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TrEMBL
Match: A0A151RDX3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_037907 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16 Identity = 69/164 (42.07%), Postives = 88/164 (53.66%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TrEMBL
Match: G7IJP2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g083300 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 7.9e-16 Identity = 74/182 (40.66%), Postives = 100/182 (54.95%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TAIR10
Match: AT5G54790.1 (AT5G54790.1 unknown protein) HSP 1 Score: 70.9 bits (172), Expect = 9.5e-13 Identity = 67/187 (35.83%), Postives = 94/187 (50.27%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TAIR10
Match: AT3G21710.2 (AT3G21710.2 unknown protein) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09 Identity = 55/194 (28.35%), Postives = 90/194 (46.39%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TAIR10
Match: AT1G50930.1 (AT1G50930.1 unknown protein) HSP 1 Score: 51.6 bits (122), Expect = 6.0e-07 Identity = 57/200 (28.50%), Postives = 92/200 (46.00%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. TAIR10
Match: AT3G20557.1 (AT3G20557.1 unknown protein) HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06 Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. NCBI nr
Match: gi|778688640|ref|XP_011652800.1| (PREDICTED: uncharacterized protein LOC105435101 [Cucumis sativus]) HSP 1 Score: 346.3 bits (887), Expect = 3.3e-92 Identity = 172/177 (97.18%), Postives = 174/177 (98.31%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. NCBI nr
Match: gi|659109066|ref|XP_008454531.1| (PREDICTED: uncharacterized protein LOC103494923 [Cucumis melo]) HSP 1 Score: 310.5 bits (794), Expect = 2.0e-81 Identity = 159/183 (86.89%), Postives = 169/183 (92.35%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. NCBI nr
Match: gi|743933888|ref|XP_011011271.1| (PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]) HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18 Identity = 76/194 (39.18%), Postives = 103/194 (53.09%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. NCBI nr
Match: gi|645278750|ref|XP_008244374.1| (PREDICTED: uncharacterized protein LOC103342517 isoform X2 [Prunus mume]) HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17 Identity = 74/181 (40.88%), Postives = 102/181 (56.35%), Query Frame = 1
BLAST of CSPI03G23440.1 vs. NCBI nr
Match: gi|297735971|emb|CBI23945.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 97.8 bits (242), Expect = 2.1e-17 Identity = 75/175 (42.86%), Postives = 100/175 (57.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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